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The map label for this gene is ydcP [H]

Identifier: 160876809

GI number: 160876809

Start: 4370965

End: 4372881

Strand: Reverse

Name: ydcP [H]

Synonym: Sbal195_3705

Alternate gene names: 160876809

Gene position: 4372881-4370965 (Counterclockwise)

Preceding gene: 160876815

Following gene: 160876808

Centisome position: 81.78

GC content: 48.57

Gene sequence:

>1917_bases
ATGAGCCAGCCAGAGATATACACTCCCGAGAATCTTTCTCACGTCCATAACCGCCTTGAGTTATTGGCGCCTGCAAAAAA
TGCTGACTACGGTATCGAAGCCATACGCCATGGTGCCGATGCGGTATACATAGGGGGGCCCGCATTCGGTGCGCGGGCAA
CGGCAGGTAACAGTGTTGAAGATATCGCGCGACTCTGTACTTATGCTCATCAATATCATGCTCAGGTATTCGTCGCCCTC
AATACCATTTTGATGGATAACGAACTGGCCGACGCCGAAAAACTCATTTGGCAATTGTACGAAGCCGGTGCCGATGCGCT
GATTGTGCAGGACATGGGCGTATTGCAGCTCAATTTGCCGCCGATTGCCCTGCATGCCAGTACCCAAATGGATAACCGCA
GCCCAGAAAAAGTGGCGTTCTTAGAGCAAGTTGGTTTTTCTCAGGTGGTGCTCGCCCGCGAATTAGGCTTGAGCCAAATC
CGTGATGTGGCCGCACATACGAATATGCAGCTCGAATTCTTTATCCACGGCGCTCTGTGTGTGGCTTACAGTGGTTTGTG
TAACTTGAGTCATTCCTTTAGTAACCGCAGTGCTAACCGCGGCGAATGCTCGCAAATGTGCCGCTTGCCGGGCAACCTTA
AAACCCGTCAAGGCGATGTGTTAGCGCAGAATGAACACTTATTGTCTTTAAAAGACAATAACCAAACCGAAAACCTCGAA
GCGCTCATCGACGCTGGCATTCGCTCGTTTAAGATTGAAGGTCGCTTAAAAGATTTAAGTTACGTTAAAAACGTCACCGC
GCATTATCGCCAAAAGTTGGATGCGATTATGGCGCGTCGCCCTGAGTTTAAGGCTTCGTCCCACGGCCGTTGTGAACATT
CTTTTATCCCCGATCCTGAAAAGACTTTTAACCGCGGCAGCACAGATTACTTTGTTAACGAACGTAACCAAGGCATTAAA
GATTTCCGCTCGCCAAAATATATCGGTGAAGAAGTCGGTAAAGTGGTCAGCATAGGCAAAGACTTTATCCAAGTGAGCTC
AACCCATGAGTTTAATAACGGCGATGGCTTAGCGTTTTTCCCCGCGAATTTTGCCATGGCAAAACAATCCGATGACAAGC
TGCAAGGCCTGCGAGTTAACCGCGCCGAAGGCTTAAAGCTGCATATATTGCAGGTGCCAAAGGATTTAAAAGTCGGCATG
ACTTTGTACCGTAACCATAACCAAGCCTTCGAAGCCCTGTTATCTAAAGAATCTTCTAAGCGTATTATCGGCGTCGATTT
ACGGTTGAGCGACACCGAAGACGGACTGGCGCTGACCTTGACGGATATCTATGGCTTTACAGCCACAGTCAATTTAGTGG
TCGAGAAGACACCCGCGACAGATGTCGACAAGACCTTACAAAATACCCGCACTCAGCTAGGTAAGCTCGGTAGTACCGAC
TTTGTTGCCCACAGTATCAGTATCGATACGGCGCAAGCATGGTTCTTGCCAGCGTCTGTGCTCAATGGTCTACGCCGTGA
TGGCGTGGCCGCTTTAGAGGCTGCCCGTGTACAAGGTTATGTGCGTCCACTGCCGTGGAAACATAATCAAGATGCAGTCT
ATCCCGTTAAGCATTTGAGTTACTTAGGTAACGTAGCCAATGAGAAGGCCAAGGATTTTTATCAACGCCACGGCGTGATT
GAAATTCAAGATACCTATGAGAAAAATGGTGTTACCGAAGACGTGCCATTAATGATCACTAAGCATTGCCTGCGGTTTAA
CTTCAATCTGTGTCCGAAGGAAGTACCAGGCATCAAGGCCGATCCTATGGTGCTTGAAATCGGTAACGATGTGCTCAAGC
TGGTCTTTGACTGTCCTAAATGTGAAATGATGGTGGTCGGTGAAAACCGTCAAGTGCGAGGCCTGAAACACCTTTAA

Upstream 100 bases:

>100_bases
GTAAAGCGCATTAGTTGATGATTTGCTGATAGAGCTGGATTTGAGTTCTTGCTATAATTACGCTCTTTTTTGTTAACGAC
CCTGTTGAGCCTTTTAAGCC

Downstream 100 bases:

>100_bases
CACTTGTCATTAGGAGCATTGCCCAGTGCAATGCTCCTAACACCCATTCAGCTAGCATCTGCGCGCCTACCTATCATTGA
TGTTGTTCTCACCATAGCTA

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 638; Mature: 637

Protein sequence:

>638_residues
MSQPEIYTPENLSHVHNRLELLAPAKNADYGIEAIRHGADAVYIGGPAFGARATAGNSVEDIARLCTYAHQYHAQVFVAL
NTILMDNELADAEKLIWQLYEAGADALIVQDMGVLQLNLPPIALHASTQMDNRSPEKVAFLEQVGFSQVVLARELGLSQI
RDVAAHTNMQLEFFIHGALCVAYSGLCNLSHSFSNRSANRGECSQMCRLPGNLKTRQGDVLAQNEHLLSLKDNNQTENLE
ALIDAGIRSFKIEGRLKDLSYVKNVTAHYRQKLDAIMARRPEFKASSHGRCEHSFIPDPEKTFNRGSTDYFVNERNQGIK
DFRSPKYIGEEVGKVVSIGKDFIQVSSTHEFNNGDGLAFFPANFAMAKQSDDKLQGLRVNRAEGLKLHILQVPKDLKVGM
TLYRNHNQAFEALLSKESSKRIIGVDLRLSDTEDGLALTLTDIYGFTATVNLVVEKTPATDVDKTLQNTRTQLGKLGSTD
FVAHSISIDTAQAWFLPASVLNGLRRDGVAALEAARVQGYVRPLPWKHNQDAVYPVKHLSYLGNVANEKAKDFYQRHGVI
EIQDTYEKNGVTEDVPLMITKHCLRFNFNLCPKEVPGIKADPMVLEIGNDVLKLVFDCPKCEMMVVGENRQVRGLKHL

Sequences:

>Translated_638_residues
MSQPEIYTPENLSHVHNRLELLAPAKNADYGIEAIRHGADAVYIGGPAFGARATAGNSVEDIARLCTYAHQYHAQVFVAL
NTILMDNELADAEKLIWQLYEAGADALIVQDMGVLQLNLPPIALHASTQMDNRSPEKVAFLEQVGFSQVVLARELGLSQI
RDVAAHTNMQLEFFIHGALCVAYSGLCNLSHSFSNRSANRGECSQMCRLPGNLKTRQGDVLAQNEHLLSLKDNNQTENLE
ALIDAGIRSFKIEGRLKDLSYVKNVTAHYRQKLDAIMARRPEFKASSHGRCEHSFIPDPEKTFNRGSTDYFVNERNQGIK
DFRSPKYIGEEVGKVVSIGKDFIQVSSTHEFNNGDGLAFFPANFAMAKQSDDKLQGLRVNRAEGLKLHILQVPKDLKVGM
TLYRNHNQAFEALLSKESSKRIIGVDLRLSDTEDGLALTLTDIYGFTATVNLVVEKTPATDVDKTLQNTRTQLGKLGSTD
FVAHSISIDTAQAWFLPASVLNGLRRDGVAALEAARVQGYVRPLPWKHNQDAVYPVKHLSYLGNVANEKAKDFYQRHGVI
EIQDTYEKNGVTEDVPLMITKHCLRFNFNLCPKEVPGIKADPMVLEIGNDVLKLVFDCPKCEMMVVGENRQVRGLKHL
>Mature_637_residues
SQPEIYTPENLSHVHNRLELLAPAKNADYGIEAIRHGADAVYIGGPAFGARATAGNSVEDIARLCTYAHQYHAQVFVALN
TILMDNELADAEKLIWQLYEAGADALIVQDMGVLQLNLPPIALHASTQMDNRSPEKVAFLEQVGFSQVVLARELGLSQIR
DVAAHTNMQLEFFIHGALCVAYSGLCNLSHSFSNRSANRGECSQMCRLPGNLKTRQGDVLAQNEHLLSLKDNNQTENLEA
LIDAGIRSFKIEGRLKDLSYVKNVTAHYRQKLDAIMARRPEFKASSHGRCEHSFIPDPEKTFNRGSTDYFVNERNQGIKD
FRSPKYIGEEVGKVVSIGKDFIQVSSTHEFNNGDGLAFFPANFAMAKQSDDKLQGLRVNRAEGLKLHILQVPKDLKVGMT
LYRNHNQAFEALLSKESSKRIIGVDLRLSDTEDGLALTLTDIYGFTATVNLVVEKTPATDVDKTLQNTRTQLGKLGSTDF
VAHSISIDTAQAWFLPASVLNGLRRDGVAALEAARVQGYVRPLPWKHNQDAVYPVKHLSYLGNVANEKAKDFYQRHGVIE
IQDTYEKNGVTEDVPLMITKHCLRFNFNLCPKEVPGIKADPMVLEIGNDVLKLVFDCPKCEMMVVGENRQVRGLKHL

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=632, Percent_Identity=50.7911392405063, Blast_Score=598, Evalue=1e-172,
Organism=Escherichia coli, GI1788397, Length=451, Percent_Identity=26.6075388026608, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1789548, Length=306, Percent_Identity=30.718954248366, Blast_Score=105, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 70969; Mature: 70837

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQPEIYTPENLSHVHNRLELLAPAKNADYGIEAIRHGADAVYIGGPAFGARATAGNSVE
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCHH
DIARLCTYAHQYHAQVFVALNTILMDNELADAEKLIWQLYEAGADALIVQDMGVLQLNLP
HHHHHHHHHHHHHHHHHEEHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCEEEECCC
PIALHASTQMDNRSPEKVAFLEQVGFSQVVLARELGLSQIRDVAAHTNMQLEFFIHGALC
CEEEEECCCCCCCCCHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHCCCEEEEEEHHHHH
VAYSGLCNLSHSFSNRSANRGECSQMCRLPGNLKTRQGDVLAQNEHLLSLKDNNQTENLE
HHHHHHHHCCHHHCCCCCCCCHHHHHHCCCCCCCCCCCCEEECCCEEEEECCCCCCHHHH
ALIDAGIRSFKIEGRLKDLSYVKNVTAHYRQKLDAIMARRPEFKASSHGRCEHSFIPDPE
HHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
KTFNRGSTDYFVNERNQGIKDFRSPKYIGEEVGKVVSIGKDFIQVSSTHEFNNGDGLAFF
HHHCCCCCCEEECCCCCCHHHHCCCHHHHHHHHHHHHHCHHHHEECCCCCCCCCCEEEEE
PANFAMAKQSDDKLQGLRVNRAEGLKLHILQVPKDLKVGMTLYRNHNQAFEALLSKESSK
CCCCEECCCCCCHHCCEEEECCCCCEEEEEECCCCHHHCHHHECCCHHHHHHHHCCCCCC
RIIGVDLRLSDTEDGLALTLTDIYGFTATVNLVVEKTPATDVDKTLQNTRTQLGKLGSTD
CEEEEEEEECCCCCCEEEEEEHHCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCH
FVAHSISIDTAQAWFLPASVLNGLRRDGVAALEAARVQGYVRPLPWKHNQDAVYPVKHLS
HEEEEEEECCHHHHEEHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
YLGNVANEKAKDFYQRHGVIEIQDTYEKNGVTEDVPLMITKHCLRFNFNLCPKEVPGIKA
HHHHHHHHHHHHHHHHCCEEEEECCHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
DPMVLEIGNDVLKLVFDCPKCEMMVVGENRQVRGLKHL
CCEEEECCHHHHHHHHCCCCCEEEEECCCCCCCCCCCC
>Mature Secondary Structure 
SQPEIYTPENLSHVHNRLELLAPAKNADYGIEAIRHGADAVYIGGPAFGARATAGNSVE
CCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCHH
DIARLCTYAHQYHAQVFVALNTILMDNELADAEKLIWQLYEAGADALIVQDMGVLQLNLP
HHHHHHHHHHHHHHHHHEEHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCEEEECCC
PIALHASTQMDNRSPEKVAFLEQVGFSQVVLARELGLSQIRDVAAHTNMQLEFFIHGALC
CEEEEECCCCCCCCCHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHCCCEEEEEEHHHHH
VAYSGLCNLSHSFSNRSANRGECSQMCRLPGNLKTRQGDVLAQNEHLLSLKDNNQTENLE
HHHHHHHHCCHHHCCCCCCCCHHHHHHCCCCCCCCCCCCEEECCCEEEEECCCCCCHHHH
ALIDAGIRSFKIEGRLKDLSYVKNVTAHYRQKLDAIMARRPEFKASSHGRCEHSFIPDPE
HHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
KTFNRGSTDYFVNERNQGIKDFRSPKYIGEEVGKVVSIGKDFIQVSSTHEFNNGDGLAFF
HHHCCCCCCEEECCCCCCHHHHCCCHHHHHHHHHHHHHCHHHHEECCCCCCCCCCEEEEE
PANFAMAKQSDDKLQGLRVNRAEGLKLHILQVPKDLKVGMTLYRNHNQAFEALLSKESSK
CCCCEECCCCCCHHCCEEEECCCCCEEEEEECCCCHHHCHHHECCCHHHHHHHHCCCCCC
RIIGVDLRLSDTEDGLALTLTDIYGFTATVNLVVEKTPATDVDKTLQNTRTQLGKLGSTD
CEEEEEEEECCCCCCEEEEEEHHCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCH
FVAHSISIDTAQAWFLPASVLNGLRRDGVAALEAARVQGYVRPLPWKHNQDAVYPVKHLS
HEEEEEEECCHHHHEEHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
YLGNVANEKAKDFYQRHGVIEIQDTYEKNGVTEDVPLMITKHCLRFNFNLCPKEVPGIKA
HHHHHHHHHHHHHHHHCCEEEEECCHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
DPMVLEIGNDVLKLVFDCPKCEMMVVGENRQVRGLKHL
CCEEEECCHHHHHHHHCCCCCEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]