BacMap

Definition	Shewanella baltica OS195 chromosome, complete genome.
Accession	NC_009997
Length	5,347,283

Click here to switch to the map view.

The map label for this gene is yciK [H]

Identifier: 160875903

GI number: 160875903

Start: 3326759

End: 3327496

Strand: Direct

Name: yciK [H]

Synonym: Sbal195_2792

Alternate gene names: 160875903

Gene position: 3326759-3327496 (Clockwise)

Preceding gene: 160875900

Following gene: 160875904

Centisome position: 62.21

GC content: 49.32

Gene sequence:

>738_bases
ATGTTGGAATATCAAGCAGCAAAAGATTTACTCAAAGGCAAAACAATTTTAGTGACAGGCGCTGGCGCTGGCATAGGTCG
CACCGCTGCCATTGAGTTTGCAAAGCACGGCGCCACTGTGATTTTACTCGGTAAAACAGTGAAAAAACTAGAAGCGGTTT
ACGATGTCATCGAACAAGCCGGTTATCCAAAACCTGCCATAGTGCCATTAGATCTTAAGGGCGCGACGGAGCAAAATTAT
CGCGATATGGCCGATACCATAGCCGAGCAATTCGATCATTTAGACGGCTTATTACATAACGCGAGCCTGCTCGGTGCCCT
AGGCCCGTTTGAACACATAGATATTTCATCACTCGAAGACGTACTCAAAGTGAACGTCACGGCCCAAGTTATGCTAACTA
AAGCATTACTACCTGTGATGCGCCAAGCACCCAGTGCATCGATTATCTTTACGTCGAGCAGTGTGGGTCGTCAAGGCCGC
GCCTACTGGGGACCTTATGCCTTCTCTAAGTTTGCCACCGAAGGCATGATGCAAGTCCTCGCCCATGAGTGCGATGGCAC
CTCGGTTCGGGTCAACAGTATCAATCCAGGTGCAACCCGCACTGAGATGCGCGCTAAAGCCTACCCAGCTGAGAATCCAC
TGGATCTCAAAACCGCAGAAGAGATCATGCCGACCTATTTATATTTGATGGGTCAAGATGCTAGCGCAGTGAACGGTCAG
CAGTTCAACGCTCAGTAA

Upstream 100 bases:

>100_bases
TATTTATAACAAAGTTTCATTCATTTGTTTGAAACATGCGTTTATCACTTCGGCGACTCTAGAAGTGGCGGGCATTCTCG
CCAAGAGGAAAAAGAGACTC

Downstream 100 bases:

>100_bases
TCGCATCGCTTGTCGGTTTAGCAGTATGATTCAGCAATAATAAAGGGCCTATTGATGGCCCTTTATTATTTTAGATTGTC
CCGTCCTGAAATACGTTGAC

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MLEYQAAKDLLKGKTILVTGAGAGIGRTAAIEFAKHGATVILLGKTVKKLEAVYDVIEQAGYPKPAIVPLDLKGATEQNY
RDMADTIAEQFDHLDGLLHNASLLGALGPFEHIDISSLEDVLKVNVTAQVMLTKALLPVMRQAPSASIIFTSSSVGRQGR
AYWGPYAFSKFATEGMMQVLAHECDGTSVRVNSINPGATRTEMRAKAYPAENPLDLKTAEEIMPTYLYLMGQDASAVNGQ
QFNAQ

Sequences:

>Translated_245_residues
MLEYQAAKDLLKGKTILVTGAGAGIGRTAAIEFAKHGATVILLGKTVKKLEAVYDVIEQAGYPKPAIVPLDLKGATEQNY
RDMADTIAEQFDHLDGLLHNASLLGALGPFEHIDISSLEDVLKVNVTAQVMLTKALLPVMRQAPSASIIFTSSSVGRQGR
AYWGPYAFSKFATEGMMQVLAHECDGTSVRVNSINPGATRTEMRAKAYPAENPLDLKTAEEIMPTYLYLMGQDASAVNGQ
QFNAQ
>Mature_245_residues
MLEYQAAKDLLKGKTILVTGAGAGIGRTAAIEFAKHGATVILLGKTVKKLEAVYDVIEQAGYPKPAIVPLDLKGATEQNY
RDMADTIAEQFDHLDGLLHNASLLGALGPFEHIDISSLEDVLKVNVTAQVMLTKALLPVMRQAPSASIIFTSSSVGRQGR
AYWGPYAFSKFATEGMMQVLAHECDGTSVRVNSINPGATRTEMRAKAYPAENPLDLKTAEEIMPTYLYLMGQDASAVNGQ
QFNAQ

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI157739938, Length=199, Percent_Identity=28.1407035175879, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI4503817, Length=221, Percent_Identity=28.0542986425339, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI20149619, Length=254, Percent_Identity=27.5590551181102, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI7657478, Length=196, Percent_Identity=27.5510204081633, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI32455239, Length=192, Percent_Identity=31.7708333333333, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI5031765, Length=192, Percent_Identity=31.7708333333333, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI4504505, Length=241, Percent_Identity=26.5560165975104, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI210032110, Length=192, Percent_Identity=28.6458333333333, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI32483357, Length=243, Percent_Identity=25.1028806584362, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI4557649, Length=214, Percent_Identity=26.6355140186916, Blast_Score=64, Evalue=1e-10,
Organism=Escherichia coli, GI1787526, Length=244, Percent_Identity=52.0491803278688, Blast_Score=237, Evalue=5e-64,
Organism=Escherichia coli, GI87082100, Length=212, Percent_Identity=32.0754716981132, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1790717, Length=194, Percent_Identity=29.8969072164948, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789378, Length=242, Percent_Identity=28.5123966942149, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786701, Length=217, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI2367175, Length=237, Percent_Identity=27.4261603375527, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1787820, Length=182, Percent_Identity=27.4725274725275, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787335, Length=241, Percent_Identity=25.7261410788382, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787905, Length=239, Percent_Identity=28.4518828451883, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17562904, Length=196, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17562906, Length=207, Percent_Identity=28.9855072463768, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17560220, Length=211, Percent_Identity=28.9099526066351, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17562908, Length=200, Percent_Identity=30.5, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71994604, Length=187, Percent_Identity=30.4812834224599, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17544670, Length=205, Percent_Identity=27.3170731707317, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17531453, Length=196, Percent_Identity=29.0816326530612, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17557780, Length=220, Percent_Identity=26.8181818181818, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17560150, Length=195, Percent_Identity=30.2564102564103, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193204405, Length=196, Percent_Identity=28.0612244897959, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17562990, Length=194, Percent_Identity=30.4123711340206, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=203, Percent_Identity=30.0492610837438, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI115534660, Length=198, Percent_Identity=26.7676767676768, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17562910, Length=197, Percent_Identity=27.4111675126904, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=243, Percent_Identity=23.4567901234568, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17567345, Length=199, Percent_Identity=27.1356783919598, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17568967, Length=249, Percent_Identity=26.5060240963855, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=188, Percent_Identity=27.6595744680851, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71997402, Length=193, Percent_Identity=27.979274611399, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17570069, Length=194, Percent_Identity=27.319587628866, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI72000259, Length=189, Percent_Identity=28.042328042328, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17563726, Length=204, Percent_Identity=26.9607843137255, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17538480, Length=199, Percent_Identity=28.1407035175879, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17536025, Length=200, Percent_Identity=30, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17564282, Length=176, Percent_Identity=28.9772727272727, Blast_Score=64, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6323882, Length=215, Percent_Identity=32.093023255814, Blast_Score=88, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6322861, Length=239, Percent_Identity=29.7071129707113, Blast_Score=80, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24643142, Length=242, Percent_Identity=30.5785123966942, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24644339, Length=196, Percent_Identity=31.6326530612245, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI21355319, Length=244, Percent_Identity=26.2295081967213, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI23397609, Length=197, Percent_Identity=34.010152284264, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI21358495, Length=215, Percent_Identity=29.7674418604651, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21356301, Length=210, Percent_Identity=28.5714285714286, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI45553409, Length=253, Percent_Identity=26.8774703557312, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24647948, Length=253, Percent_Identity=26.8774703557312, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24647946, Length=253, Percent_Identity=26.8774703557312, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI28571526, Length=198, Percent_Identity=29.2929292929293, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI21357041, Length=198, Percent_Identity=29.2929292929293, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24639444, Length=240, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI19921754, Length=204, Percent_Identity=30.8823529411765, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26389; Mature: 26389

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEYQAAKDLLKGKTILVTGAGAGIGRTAAIEFAKHGATVILLGKTVKKLEAVYDVIEQA
CCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHC
GYPKPAIVPLDLKGATEQNYRDMADTIAEQFDHLDGLLHNASLLGALGPFEHIDISSLED
CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
VLKVNVTAQVMLTKALLPVMRQAPSASIIFTSSSVGRQGRAYWGPYAFSKFATEGMMQVL
HHHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEECCHHHHHHHHHHHHHHH
AHECDGTSVRVNSINPGATRTEMRAKAYPAENPLDLKTAEEIMPTYLYLMGQDASAVNGQ
HHCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCCCC
QFNAQ
CCCCC
>Mature Secondary Structure
MLEYQAAKDLLKGKTILVTGAGAGIGRTAAIEFAKHGATVILLGKTVKKLEAVYDVIEQA
CCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHC
GYPKPAIVPLDLKGATEQNYRDMADTIAEQFDHLDGLLHNASLLGALGPFEHIDISSLED
CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
VLKVNVTAQVMLTKALLPVMRQAPSASIIFTSSSVGRQGRAYWGPYAFSKFATEGMMQVL
HHHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEECCHHHHHHHHHHHHHHH
AHECDGTSVRVNSINPGATRTEMRAKAYPAENPLDLKTAEEIMPTYLYLMGQDASAVNGQ
HHCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCCCC
QFNAQ
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1885549 [H]