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The map label for this gene is xerD [C]

Identifier: 160875848

GI number: 160875848

Start: 3244606

End: 3245469

Strand: Reverse

Name: xerD [C]

Synonym: Sbal195_2736

Alternate gene names: 160875848

Gene position: 3245469-3244606 (Counterclockwise)

Preceding gene: 160875849

Following gene: 160875847

Centisome position: 60.69

GC content: 48.15

Gene sequence:

>864_bases
ATGTCATCACTTCTGCAACAATTCCATGATGAGATTAGTTTACGTGGTTACTCGGCCCGTACGCGTAACGCTTATTTGTA
TGCCATCACCCAACTGCAGCACTATGCAAACCAACCGTTCGATAACATTACGGATGAGCAGCTTACGGCTTATTTCCGTT
ACTTAAATCTTGAGCGGCATCATTCCAGGGCCACCTTAAAGTTACAGCTTAATGGCATTCATTTTTTCTATGAACATGTC
CTAGGGCGCGATTTTACGGTTCAGTTGAGTTTACCTAAACGTCCACACAAGCTGCCGCAATTGCTTAGCTGCCAAGATAT
CGCGGCATTGCTGTGTCACTGTCAAAACCTGAAACAACGCGCTATGTTGGCGCTATGTTATGGTTGTGGTTTGCGTGTCA
GTGAGTTAACCCATATTAAGGTTGCTGATATCGATGGGCAGCGGCAGTTGCTCAAAGTGTGTCAAGGGAAAGGGGCCTAC
GACAGGTTGGTGATTATTTCACCGACCTTGCTCACCCTGTTGCGTCAGTATTGGCGAGCGTATCATCCCGTCGAATGGTT
GTTTGCCTCGACCTATCATGATGTGGTTTATCCGCTGCATGAGTCGACCTTTCGTAAAGCGTTAGCGAAGGCGGCCCGCT
TAGCGAGTATCACTAAGCCATGCAGTCCACACAGCCTAAGGCATGCTTATGCGACCCATCAATTACAAGCGGGTATGCCA
CTTCATCAATTACAGGCTCAACTTGGTCATCACAGTATTAAATCCACCGAGCGCTACTTGCATTGGTCGCCGGAATTGGG
TCATCAAGGCTGTGACTTGCTAGCAAGTCTTGGGGGGATGCCATGGCAACCTCCTACCATGTAA

Upstream 100 bases:

>100_bases
GCACGAATAAAATGTTGAACTAAGCCGCTGCGCGGAGCCCAAAGCGAACCACTGTTCCACACTTACTCCTAGGGATAATC
CCTTACCTAGGAGGTCTACC

Downstream 100 bases:

>100_bases
GCGATATCCTTCATCAGCACTTAGCCCACTATCAACAGCAGCATAAACTGACCGAACAACAAGCCTTAGTCTGCCAGCAT
ATTCAACAGTGTCGCACGCA

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MSSLLQQFHDEISLRGYSARTRNAYLYAITQLQHYANQPFDNITDEQLTAYFRYLNLERHHSRATLKLQLNGIHFFYEHV
LGRDFTVQLSLPKRPHKLPQLLSCQDIAALLCHCQNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAY
DRLVIISPTLLTLLRQYWRAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYATHQLQAGMP
LHQLQAQLGHHSIKSTERYLHWSPELGHQGCDLLASLGGMPWQPPTM

Sequences:

>Translated_287_residues
MSSLLQQFHDEISLRGYSARTRNAYLYAITQLQHYANQPFDNITDEQLTAYFRYLNLERHHSRATLKLQLNGIHFFYEHV
LGRDFTVQLSLPKRPHKLPQLLSCQDIAALLCHCQNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAY
DRLVIISPTLLTLLRQYWRAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYATHQLQAGMP
LHQLQAQLGHHSIKSTERYLHWSPELGHQGCDLLASLGGMPWQPPTM
>Mature_286_residues
SSLLQQFHDEISLRGYSARTRNAYLYAITQLQHYANQPFDNITDEQLTAYFRYLNLERHHSRATLKLQLNGIHFFYEHVL
GRDFTVQLSLPKRPHKLPQLLSCQDIAALLCHCQNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAYD
RLVIISPTLLTLLRQYWRAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYATHQLQAGMPL
HQLQAQLGHHSIKSTERYLHWSPELGHQGCDLLASLGGMPWQPPTM

Specific function: May function as an integrase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=204, Percent_Identity=33.3333333333333, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1790244, Length=213, Percent_Identity=27.2300469483568, Blast_Score=74, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 32955; Mature: 32824

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLLQQFHDEISLRGYSARTRNAYLYAITQLQHYANQPFDNITDEQLTAYFRYLNLERH
CHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC
HSRATLKLQLNGIHFFYEHVLGRDFTVQLSLPKRPHKLPQLLSCQDIAALLCHCQNLKQR
CCCEEEEEEECCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAYDRLVIISPTLLTLLRQYWRA
HHHHHHHHCCCCHHHEEEEEEECCCCHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHH
YHPVEWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYATHQLQAGMP
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
LHQLQAQLGHHSIKSTERYLHWSPELGHQGCDLLASLGGMPWQPPTM
HHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SSLLQQFHDEISLRGYSARTRNAYLYAITQLQHYANQPFDNITDEQLTAYFRYLNLERH
HHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC
HSRATLKLQLNGIHFFYEHVLGRDFTVQLSLPKRPHKLPQLLSCQDIAALLCHCQNLKQR
CCCEEEEEEECCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAYDRLVIISPTLLTLLRQYWRA
HHHHHHHHCCCCHHHEEEEEEECCCCHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHH
YHPVEWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYATHQLQAGMP
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
LHQLQAQLGHHSIKSTERYLHWSPELGHQGCDLLASLGGMPWQPPTM
HHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]