Click here to switch to the map view.

The map label for this gene is hlyB [H]

Identifier: 160875790

GI number: 160875790

Start: 3178831

End: 3180828

Strand: Reverse

Name: hlyB [H]

Synonym: Sbal195_2678

Alternate gene names: 160875790

Gene position: 3180828-3178831 (Counterclockwise)

Preceding gene: 160875793

Following gene: 160875789

Centisome position: 59.48

GC content: 48.25

Gene sequence:

>1998_bases
ATGTTGTTACCAACACGTATTTCGCAGCGGCTCACTATGGGCAGCATAGTGCTGCTTTTACTGACCGGACTTGCCGTTTT
TGGTGTGATGTCACTTAGGGGGCAACCTAGAGTAGTGGCGGCGAGTCAAGAGTTAATCGAGCAAACCGGTAGCAGTATCG
TGAGGCAACTCGCGCTCAAACTTGCAAGCATTGAGGGCATTACCTTAAGCCTTGCACACCTCGCAGAAGTGTTACCCCAC
GAGCAAGCTCTTTACCTTAATTCCTTACCTAATCTAATTGATAACAATGGCGATCTCACTATCGCTGGCGGCGGGATCTG
GCCTGAGCCGGATAAATTTGTCGCTGGAAGCGCCCGCCATAGTTTTTTCTGGGCCCGTGGTAGCGATAATTTACTGGCTT
ATTCAGATGACTATAATGCGCAATCTGGTCCTGGCTATCACAATGATCCTTGGTATACCGGGGCACGCACAAGTTCTGTA
TCTCAGTGTTTATGGTCTGAAGCCTATCAGGATACCGTTACAAAAGTGGCTATGGTGACATGCAGTGTGCCATATCGTCT
GACGGGGAGATTTGCCGGGGTCGCAACAATAGATTTGAAACTTGATGATTTAGCAAAATTTCTAACAGAACATGGCAATG
TAACTGACGGTTATGCTTTTGCTTTAGATCAAGCGGGTAATATCTTGCATTTTCCTGAAGCGAATAAGTCCGACACTATG
CTGCGCTTCACCGATCTCGTCGGGCAGTTACCTTGGCTTGCCCCCGTTGAAGCTGCGCTTAAACAAACCACAATTAATAA
CGTTATTTCAGTGAGTTTAGATAAGGATGGAAGACTCAATCAGGCGAGCGAGGTAAGCCTTTTTGTGATGCCTGATACCG
GATGGGTGATTGGTCTTGTGACGCCAAAGACCCGAGTCACAGGGCTTGCCCGTGAGCTGACCTTTGATATTTTGTTGTTT
TTATTGCCCTTGCTCGCCATTTTACTTTATTTGGCTTGGTTGTCGGGTAAAAAACTGTTGGCGCAACTTGAGGAAACCAC
AGATCAAATTGCTTCCCTTGGGAGCGGTAATTTGGGCGCCAATGTCGAGCTGCAAATTCAGCGGGATGATGAAATTGGCG
CTTTGCGTCGAGCTGTAAATACCTATGCGGGTACACTGAGGGCAATGCTCGATTTGATCACCCAAGAGGCGAAGAAAGTT
CAGTTTGAGGCAACGCAATTAAGTGGTCTTAGCCATAGGTTAGCCCAACGTGCGGAACAACAGCGGCTCGAGAGTGCGCA
ACTCGCCGCGGCGATAACACAAATGTCTTCAAGCGCGATGGAAGTGGCAAATAACACTAATGATTGTGCTGCAACAGCGC
AATCTTCTTTAATTGTGGTGCGAGAAGGGCAAACCCGAGTGGCATCCAGCAATGCTTCCATTGAGGCATTAGCGGGGGAA
ATCGCCAATGCAACCAAGGTGATATCCCAGTTGGCTCAAGATAGCCAGAAAGTGGGCGCCGTATTGGATGTGATCAAGGC
GATTTCTGAGCAAACTAATCTATTAGCGTTAAATGCGGCTATAGAAGCAGCAAGGGCGGGGGATCAGGGTCGTGGCTTTG
CGGTTGTTGCCGATGAAGTACGGACTCTTGCGGGGCGAACTCAAGATTCCGCCAATGAAATCAGTACCATGATTAATGCT
TTGCAATCAGCATCTCGGCTTGCGGTACAAGCGATGCAAACGGGCGAGTCCAGCACTGTCCACGCAGTTGCTGAGGCTGA
GGGAGCGGCCAGTTCTCTATCGAGTACTGTACAAAGTTTCGATGATATTTCGCAGCGAGCCCAGCAAATTGCTTTAGCTG
CTCAGCAACAAAGCCAAGTGACTCAGGAGATCAATGAGTTGGCGGTGAGGATTAATAGCATTAGTGAAGATAACTCACTT
GATGCGACCGCACTCGATGCGTTAAGCCTTGAAATGCAGAAACTATCCGACCGTTTAATCAATATTAATCGAGCTTAA

Upstream 100 bases:

>100_bases
ATTTGCACTAGGATGGTGCGACGCATGATTCTCGATTGTCTTGGATCATACGGCCGAGCAATTCTCCCATCTGGGTGACT
TATTTTAAGTAGAGAAAGCT

Downstream 100 bases:

>100_bases
GTCTAATATCCTGATAAAAAGTTATGTAGTGGATCGCCTTGTTAGTGGCGCTTTAACTGACCGGAAATTCAAAGCATAAG
TCGAATTATGCGATTTTTTA

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 665; Mature: 665

Protein sequence:

>665_residues
MLLPTRISQRLTMGSIVLLLLTGLAVFGVMSLRGQPRVVAASQELIEQTGSSIVRQLALKLASIEGITLSLAHLAEVLPH
EQALYLNSLPNLIDNNGDLTIAGGGIWPEPDKFVAGSARHSFFWARGSDNLLAYSDDYNAQSGPGYHNDPWYTGARTSSV
SQCLWSEAYQDTVTKVAMVTCSVPYRLTGRFAGVATIDLKLDDLAKFLTEHGNVTDGYAFALDQAGNILHFPEANKSDTM
LRFTDLVGQLPWLAPVEAALKQTTINNVISVSLDKDGRLNQASEVSLFVMPDTGWVIGLVTPKTRVTGLARELTFDILLF
LLPLLAILLYLAWLSGKKLLAQLEETTDQIASLGSGNLGANVELQIQRDDEIGALRRAVNTYAGTLRAMLDLITQEAKKV
QFEATQLSGLSHRLAQRAEQQRLESAQLAAAITQMSSSAMEVANNTNDCAATAQSSLIVVREGQTRVASSNASIEALAGE
IANATKVISQLAQDSQKVGAVLDVIKAISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRTLAGRTQDSANEISTMINA
LQSASRLAVQAMQTGESSTVHAVAEAEGAASSLSSTVQSFDDISQRAQQIALAAQQQSQVTQEINELAVRINSISEDNSL
DATALDALSLEMQKLSDRLININRA

Sequences:

>Translated_665_residues
MLLPTRISQRLTMGSIVLLLLTGLAVFGVMSLRGQPRVVAASQELIEQTGSSIVRQLALKLASIEGITLSLAHLAEVLPH
EQALYLNSLPNLIDNNGDLTIAGGGIWPEPDKFVAGSARHSFFWARGSDNLLAYSDDYNAQSGPGYHNDPWYTGARTSSV
SQCLWSEAYQDTVTKVAMVTCSVPYRLTGRFAGVATIDLKLDDLAKFLTEHGNVTDGYAFALDQAGNILHFPEANKSDTM
LRFTDLVGQLPWLAPVEAALKQTTINNVISVSLDKDGRLNQASEVSLFVMPDTGWVIGLVTPKTRVTGLARELTFDILLF
LLPLLAILLYLAWLSGKKLLAQLEETTDQIASLGSGNLGANVELQIQRDDEIGALRRAVNTYAGTLRAMLDLITQEAKKV
QFEATQLSGLSHRLAQRAEQQRLESAQLAAAITQMSSSAMEVANNTNDCAATAQSSLIVVREGQTRVASSNASIEALAGE
IANATKVISQLAQDSQKVGAVLDVIKAISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRTLAGRTQDSANEISTMINA
LQSASRLAVQAMQTGESSTVHAVAEAEGAASSLSSTVQSFDDISQRAQQIALAAQQQSQVTQEINELAVRINSISEDNSL
DATALDALSLEMQKLSDRLININRA
>Mature_665_residues
MLLPTRISQRLTMGSIVLLLLTGLAVFGVMSLRGQPRVVAASQELIEQTGSSIVRQLALKLASIEGITLSLAHLAEVLPH
EQALYLNSLPNLIDNNGDLTIAGGGIWPEPDKFVAGSARHSFFWARGSDNLLAYSDDYNAQSGPGYHNDPWYTGARTSSV
SQCLWSEAYQDTVTKVAMVTCSVPYRLTGRFAGVATIDLKLDDLAKFLTEHGNVTDGYAFALDQAGNILHFPEANKSDTM
LRFTDLVGQLPWLAPVEAALKQTTINNVISVSLDKDGRLNQASEVSLFVMPDTGWVIGLVTPKTRVTGLARELTFDILLF
LLPLLAILLYLAWLSGKKLLAQLEETTDQIASLGSGNLGANVELQIQRDDEIGALRRAVNTYAGTLRAMLDLITQEAKKV
QFEATQLSGLSHRLAQRAEQQRLESAQLAAAITQMSSSAMEVANNTNDCAATAQSSLIVVREGQTRVASSNASIEALAGE
IANATKVISQLAQDSQKVGAVLDVIKAISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRTLAGRTQDSANEISTMINA
LQSASRLAVQAMQTGESSTVHAVAEAEGAASSLSSTVQSFDDISQRAQQIALAAQQQSQVTQEINELAVRINSISEDNSL
DATALDALSLEMQKLSDRLININRA

Specific function: May form a pore through which the hemolysin can be exported [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1787690, Length=362, Percent_Identity=29.5580110497238, Blast_Score=117, Evalue=3e-27,
Organism=Escherichia coli, GI1788194, Length=323, Percent_Identity=29.4117647058824, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1789453, Length=328, Percent_Identity=29.5731707317073, Blast_Score=105, Evalue=8e-24,
Organism=Escherichia coli, GI1788195, Length=296, Percent_Identity=32.0945945945946, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI2367378, Length=315, Percent_Identity=28.8888888888889, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR000727 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 71214; Mature: 71214

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLPTRISQRLTMGSIVLLLLTGLAVFGVMSLRGQPRVVAASQELIEQTGSSIVRQLALK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHH
LASIEGITLSLAHLAEVLPHEQALYLNSLPNLIDNNGDLTIAGGGIWPEPDKFVAGSARH
HHHCCCCEEEHHHHHHHCCCHHHHHHHHCCHHHCCCCCEEEECCCCCCCCCCCCCCCCCC
SFFWARGSDNLLAYSDDYNAQSGPGYHNDPWYTGARTSSVSQCLWSEAYQDTVTKVAMVT
CEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHE
CSVPYRLTGRFAGVATIDLKLDDLAKFLTEHGNVTDGYAFALDQAGNILHFPEANKSDTM
ECCCCEECCCCCCEEEEEEEHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCCCCCCHH
LRFTDLVGQLPWLAPVEAALKQTTINNVISVSLDKDGRLNQASEVSLFVMPDTGWVIGLV
HHHHHHHHCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEE
TPKTRVTGLARELTFDILLFLLPLLAILLYLAWLSGKKLLAQLEETTDQIASLGSGNLGA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCC
NVELQIQRDDEIGALRRAVNTYAGTLRAMLDLITQEAKKVQFEATQLSGLSHRLAQRAEQ
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRLESAQLAAAITQMSSSAMEVANNTNDCAATAQSSLIVVREGQTRVASSNASIEALAGE
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEEECCCCEEECCCCCHHHHHHH
IANATKVISQLAQDSQKVGAVLDVIKAISEQTNLLALNAAIEAARAGDQGRGFAVVADEV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCEEEEHHHH
RTLAGRTQDSANEISTMINALQSASRLAVQAMQTGESSTVHAVAEAEGAASSLSSTVQSF
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHCCHHHHHHHHHHHH
DDISQRAQQIALAAQQQSQVTQEINELAVRINSISEDNSLDATALDALSLEMQKLSDRLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
NINRA
CCCCC
>Mature Secondary Structure
MLLPTRISQRLTMGSIVLLLLTGLAVFGVMSLRGQPRVVAASQELIEQTGSSIVRQLALK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHH
LASIEGITLSLAHLAEVLPHEQALYLNSLPNLIDNNGDLTIAGGGIWPEPDKFVAGSARH
HHHCCCCEEEHHHHHHHCCCHHHHHHHHCCHHHCCCCCEEEECCCCCCCCCCCCCCCCCC
SFFWARGSDNLLAYSDDYNAQSGPGYHNDPWYTGARTSSVSQCLWSEAYQDTVTKVAMVT
CEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHE
CSVPYRLTGRFAGVATIDLKLDDLAKFLTEHGNVTDGYAFALDQAGNILHFPEANKSDTM
ECCCCEECCCCCCEEEEEEEHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCCCCCCHH
LRFTDLVGQLPWLAPVEAALKQTTINNVISVSLDKDGRLNQASEVSLFVMPDTGWVIGLV
HHHHHHHHCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEE
TPKTRVTGLARELTFDILLFLLPLLAILLYLAWLSGKKLLAQLEETTDQIASLGSGNLGA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCC
NVELQIQRDDEIGALRRAVNTYAGTLRAMLDLITQEAKKVQFEATQLSGLSHRLAQRAEQ
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRLESAQLAAAITQMSSSAMEVANNTNDCAATAQSSLIVVREGQTRVASSNASIEALAGE
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEEECCCCEEECCCCCHHHHHHH
IANATKVISQLAQDSQKVGAVLDVIKAISEQTNLLALNAAIEAARAGDQGRGFAVVADEV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCEEEEHHHH
RTLAGRTQDSANEISTMINALQSASRLAVQAMQTGESSTVHAVAEAEGAASSLSSTVQSF
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHCCHHHHHHHHHHHH
DDISQRAQQIALAAQQQSQVTQEINELAVRINSISEDNSLDATALDALSLEMQKLSDRLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
NINRA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2162464; 10952301 [H]