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The map label for this gene is nahR [H]

Identifier: 160875514

GI number: 160875514

Start: 2834218

End: 2835138

Strand: Reverse

Name: nahR [H]

Synonym: Sbal195_2402

Alternate gene names: 160875514

Gene position: 2835138-2834218 (Counterclockwise)

Preceding gene: 160875515

Following gene: 160875510

Centisome position: 53.02

GC content: 47.01

Gene sequence:

>921_bases
ATGGATTTGGCCAAGCTTTCGCGGATTAGTATGAAGCACTTGATCACTTTGCATGTGATGCTCGATACCCTGAGCGTGAC
CGCCAGCGCCGAACGTTTATGTCTTAGCCCCTCATCCGTCAGTAAAACCTTAAGCCAGCTCAGGGACAGTTTGAACGATG
AACTGTTCTATCGTAATGGCAACTCACTGGTCGCAACCCCATTGGCAAGACGATTAGGCCCAAGCGTGCAGCAAATGATC
AATGATATGAATCAGATCATGAGTCAAGATGCGTTTAATCCAGCCCATTTTGAGGGGCGTTTTTCACTTGCGATGCGCGA
AAGCACCTTTGAACTGCTGGCCGCCAAATTAAGTGCCCATATTCTGAGCTTGGCTCCTAATATCCATCTCGATATTTATA
GCAAAGACAATATCGGTTTCGATGGTCTTATTAAAGGCTCGTTAGATTTTGTGCTGTTACCCCACGATCTGAGCCAACCG
AATCCTCTTCAAGACGATCTGGTGTGGGAAACCTTGTTCAGCGATGAAATGGTCTGCCTGATGAATTCATCCCATCCCTT
GGCTAAACAGCCGCAGATCAGCTTCGATAATTACCTGAGTTTTAGCCATATCGGCATTACGGACACAGATTTGAGTACGC
CTTTTTTTGATATTTTGCTCGCCCAGCAATCTAAAAAACGTGCTGTACCCATTTCAGTCCCTGACTTTGGCAGCGCAGCG
TTAATGTGTCACCACAGTGAACTGCTTTTCACCTGCTCGCGCCGCTGGGCATCTATTGCCAGCCAAGCTAAAGGCTTAAC
CGTCAAGTCCTTACCGATAGAATATGGCAAAGTGGCTTACAGTTTCGTTTGGCATAGACAAAGTATGAAAGATCCCGCGC
TGCGCTGGCTGTACGAGCAAATTTTGCTTTGCAGTCGCTAA

Upstream 100 bases:

>100_bases
ACTGAATAAGATGCTGGGTTAGTTGTATGTTATTGTTTATAATAATTAAAATAACGTATCTTTAGATGCGTATACACGAT
AAATCAATAGGATGTCACAG

Downstream 100 bases:

>100_bases
ATATAGCAAGGGGGCAAGATTAGATTAATGACGCCTCGCTTTGCAAGCTTTGCGGCCAAGCGTTCAATATCGGCTTGTTT
ACAGCTTGGCCAATTGAGTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MDLAKLSRISMKHLITLHVMLDTLSVTASAERLCLSPSSVSKTLSQLRDSLNDELFYRNGNSLVATPLARRLGPSVQQMI
NDMNQIMSQDAFNPAHFEGRFSLAMRESTFELLAAKLSAHILSLAPNIHLDIYSKDNIGFDGLIKGSLDFVLLPHDLSQP
NPLQDDLVWETLFSDEMVCLMNSSHPLAKQPQISFDNYLSFSHIGITDTDLSTPFFDILLAQQSKKRAVPISVPDFGSAA
LMCHHSELLFTCSRRWASIASQAKGLTVKSLPIEYGKVAYSFVWHRQSMKDPALRWLYEQILLCSR

Sequences:

>Translated_306_residues
MDLAKLSRISMKHLITLHVMLDTLSVTASAERLCLSPSSVSKTLSQLRDSLNDELFYRNGNSLVATPLARRLGPSVQQMI
NDMNQIMSQDAFNPAHFEGRFSLAMRESTFELLAAKLSAHILSLAPNIHLDIYSKDNIGFDGLIKGSLDFVLLPHDLSQP
NPLQDDLVWETLFSDEMVCLMNSSHPLAKQPQISFDNYLSFSHIGITDTDLSTPFFDILLAQQSKKRAVPISVPDFGSAA
LMCHHSELLFTCSRRWASIASQAKGLTVKSLPIEYGKVAYSFVWHRQSMKDPALRWLYEQILLCSR
>Mature_306_residues
MDLAKLSRISMKHLITLHVMLDTLSVTASAERLCLSPSSVSKTLSQLRDSLNDELFYRNGNSLVATPLARRLGPSVQQMI
NDMNQIMSQDAFNPAHFEGRFSLAMRESTFELLAAKLSAHILSLAPNIHLDIYSKDNIGFDGLIKGSLDFVLLPHDLSQP
NPLQDDLVWETLFSDEMVCLMNSSHPLAKQPQISFDNYLSFSHIGITDTDLSTPFFDILLAQQSKKRAVPISVPDFGSAA
LMCHHSELLFTCSRRWASIASQAKGLTVKSLPIEYGKVAYSFVWHRQSMKDPALRWLYEQILLCSR

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=296, Percent_Identity=25.6756756756757, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87081684, Length=307, Percent_Identity=24.4299674267101, Blast_Score=91, Evalue=9e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34330; Mature: 34330

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS50931 HTH_LYSR ; PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLAKLSRISMKHLITLHVMLDTLSVTASAERLCLSPSSVSKTLSQLRDSLNDELFYRNG
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHCCCCEEEECC
NSLVATPLARRLGPSVQQMINDMNQIMSQDAFNPAHFEGRFSLAMRESTFELLAAKLSAH
CCEEECHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHH
ILSLAPNIHLDIYSKDNIGFDGLIKGSLDFVLLPHDLSQPNPLQDDLVWETLFSDEMVCL
HHHHCCCEEEEEEECCCCCCCCEEECCCCEEEECCCCCCCCCCCHHHHHHHHHCCCEEEE
MNSSHPLAKQPQISFDNYLSFSHIGITDTDLSTPFFDILLAQQSKKRAVPISVPDFGSAA
ECCCCCCCCCCCCCHHHCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEE
LMCHHSELLFTCSRRWASIASQAKGLTVKSLPIEYGKVAYSFVWHRQSMKDPALRWLYEQ
EEEECHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
ILLCSR
HHHCCC
>Mature Secondary Structure
MDLAKLSRISMKHLITLHVMLDTLSVTASAERLCLSPSSVSKTLSQLRDSLNDELFYRNG
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHCCCCEEEECC
NSLVATPLARRLGPSVQQMINDMNQIMSQDAFNPAHFEGRFSLAMRESTFELLAAKLSAH
CCEEECHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHH
ILSLAPNIHLDIYSKDNIGFDGLIKGSLDFVLLPHDLSQPNPLQDDLVWETLFSDEMVCL
HHHHCCCEEEEEEECCCCCCCCEEECCCCEEEECCCCCCCCCCCHHHHHHHHHCCCEEEE
MNSSHPLAKQPQISFDNYLSFSHIGITDTDLSTPFFDILLAQQSKKRAVPISVPDFGSAA
ECCCCCCCCCCCCCHHHCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEE
LMCHHSELLFTCSRRWASIASQAKGLTVKSLPIEYGKVAYSFVWHRQSMKDPALRWLYEQ
EEEECHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
ILLCSR
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]