Click here to switch to the map view.

The map label for this gene is tcp [H]

Identifier: 160875474

GI number: 160875474

Start: 2783367

End: 2785361

Strand: Reverse

Name: tcp [H]

Synonym: Sbal195_2362

Alternate gene names: 160875474

Gene position: 2785361-2783367 (Counterclockwise)

Preceding gene: 160875475

Following gene: 160875473

Centisome position: 52.09

GC content: 48.12

Gene sequence:

>1995_bases
ATGGGTATCTTTAATATATTTGGAAATGCTGAAGCAAGCCTAGAAAAGGATGAAGAACGTCAGCGCTATTTTCAGTTGCT
AGATAACAGTGGCAACAGCTTCATGATTGCTGACAGTCAGCGCAATATTATCTATGCGAATAAAGCCGTCGTCCGTTTGC
TGCAAGAGGCCGAGGACGATATTCGTAAAGAATTACCTCAATTCTCGGTTGCCAAACTGATCGGCAGTAATATCGATATT
TTCCATAAAAATCCAGCGCATCAACGCAATCTGTTAGAGCGCTTGACTCAGTCCCATACTGCACAAATCACCATTGGCAA
ACGTACCTTTAGGTTGATTTTGACGCCGATTATCACCTCTGAAAATAAACACTTAGGTACAGGTGTTGAATGGATAGATC
GCACCGAAAGTATCGAAGCCGAGCGCGCAACCCAGCGCATTATGGAAGCGCTCAACAATACCAGTACCAACGTCATGATC
GCCGATGCTAACCGTACGATCATTTATATGAATCGCTCGGTCGAAGCCATGTTACGCCAGTCTGAACACGAAATTAGGCA
GGCCTTACCGCATTTTTCCGTGGATAAAATCCTCGGCAGCTCGATGGATATCTTCCATCGTAATCCTGCCCACCAAGCGA
GTTTACTTGATAAATTAGACCGCAAATATGAATCGCTGATTAAGGTGGCCAGCTGCCATTTCCGTTTAACCGCCAGTCCA
ATAGTGTCAAAAGAAAGCGAGCGCTTAGGGACAGTGGTTGAATGGCTCGACCGCACCATTGAAGTGCAAACCGAGCAAGA
GATTTCCCGCATTGTGACCGCAGCAGCAGCGGGTGATTTCTCCCAAAGGGCGGACACCGAAGGCAAGCAAGGTTTCTTCC
TGATGCTGGCGAACAACTTAAATTCGTTAATTGAAACCTCAGACCGTGGACTGCAAGATGTGGCGCGCGTACTGATGGCG
CTGGCGGATGGCGATCTCACCACCCGCATTTATAACGACTATGAAGGCACGTTTAATGATTTGAAAAACTACTCAAATCA
AACCGCTGAAAAGCTATCTTTTATGATCCAAGATATTCAGCGAGCGGCGGATACCATTAATACCGCCTCAGCAGAAATTG
CCCAAGGCAACGCCGATTTATCCAGCCGCACCGAAGAGCAAGCTTCGAGCCTAGAAGAAACTTCCGCCAGCATGGAGGAA
CTCACAGGTACAGTGAAACTCAATGCGGATAACGCCAGCCAAGCCAATGCCTTAGCATCTAAAGCTTCGGAAGTGGCAGT
GGACGGTGGTGAGCTTATCCAGCAAGTCGTACAGACCATGGCATCGATTAATGAATCGGCGCGTAAGATTGCCGACATTA
TTGGTGTTATCGATGGTATTGCATTCCAAACCAACATCTTAGCGCTTAATGCCGCTGTTGAAGCTGCGCGGGCGGGTGAG
CAAGGCCGTGGCTTTGCTGTAGTCGCATCAGAAGTGCGCAGCTTAGCCCAACGCTCGGCCAATGCCGCTAAAGATATCAA
GGCATTGATCTCGGATTCCGTGTCTAAAATCGAGAGTGGCAACAGCCTTGTCGGTAAGTCCGGCGATACCATGAAGGAAA
TCGTCATCGCCATTAAACGGGTGAACGACATCATGGCGGAAATCGCCTCAGCGTCTAATGAGCAGGCAATCGGTATTGAT
GAAATCAGCAAAGCTGTAGTGCAAATGGATGAAATGACACAGCAAAATGCGGCATTGGTTGAAGAAGCGGCCGCCGCCGC
TGAAAGCATGCAATCCCAAGCACAGCAACTCTCAGACAGTGTTGCAAGTTTTCGTGTAGACGATGAGGATGAAGCCCCAA
GGCAGAGCAACGCGAGATTAGCGGCGCCCAAAGCTAAGGCGATGAAACCCATGAAGCAGCTTCAACCTATGGCAAAATCA
AGGGTGACAGAGAAACCTAAAACCAATGCGATGAAGCCCATGAAGCAAGATCAAGATGAATGGGAAGAATTTTAA

Upstream 100 bases:

>100_bases
AAGATAAGATGGTAATTCTGGTAAATATTCAGGCTCTGATCAGCAGTGATGAGCTGGGTCTAATTGATGCAAATAGTCTG
ACTGATCAGGAGCAATAATA

Downstream 100 bases:

>100_bases
TTGAGCGAAAACAAACCATTGGAGCGAGAGTTTGCCTATACCTCGGTGCACTTTAATACTGCGCGGACGACGCTGTACCG
CTTAGCAGGGATCAAACTCG

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: Citrate chemoreceptor protein [H]

Number of amino acids: Translated: 664; Mature: 663

Protein sequence:

>664_residues
MGIFNIFGNAEASLEKDEERQRYFQLLDNSGNSFMIADSQRNIIYANKAVVRLLQEAEDDIRKELPQFSVAKLIGSNIDI
FHKNPAHQRNLLERLTQSHTAQITIGKRTFRLILTPIITSENKHLGTGVEWIDRTESIEAERATQRIMEALNNTSTNVMI
ADANRTIIYMNRSVEAMLRQSEHEIRQALPHFSVDKILGSSMDIFHRNPAHQASLLDKLDRKYESLIKVASCHFRLTASP
IVSKESERLGTVVEWLDRTIEVQTEQEISRIVTAAAAGDFSQRADTEGKQGFFLMLANNLNSLIETSDRGLQDVARVLMA
LADGDLTTRIYNDYEGTFNDLKNYSNQTAEKLSFMIQDIQRAADTINTASAEIAQGNADLSSRTEEQASSLEETSASMEE
LTGTVKLNADNASQANALASKASEVAVDGGELIQQVVQTMASINESARKIADIIGVIDGIAFQTNILALNAAVEAARAGE
QGRGFAVVASEVRSLAQRSANAAKDIKALISDSVSKIESGNSLVGKSGDTMKEIVIAIKRVNDIMAEIASASNEQAIGID
EISKAVVQMDEMTQQNAALVEEAAAAAESMQSQAQQLSDSVASFRVDDEDEAPRQSNARLAAPKAKAMKPMKQLQPMAKS
RVTEKPKTNAMKPMKQDQDEWEEF

Sequences:

>Translated_664_residues
MGIFNIFGNAEASLEKDEERQRYFQLLDNSGNSFMIADSQRNIIYANKAVVRLLQEAEDDIRKELPQFSVAKLIGSNIDI
FHKNPAHQRNLLERLTQSHTAQITIGKRTFRLILTPIITSENKHLGTGVEWIDRTESIEAERATQRIMEALNNTSTNVMI
ADANRTIIYMNRSVEAMLRQSEHEIRQALPHFSVDKILGSSMDIFHRNPAHQASLLDKLDRKYESLIKVASCHFRLTASP
IVSKESERLGTVVEWLDRTIEVQTEQEISRIVTAAAAGDFSQRADTEGKQGFFLMLANNLNSLIETSDRGLQDVARVLMA
LADGDLTTRIYNDYEGTFNDLKNYSNQTAEKLSFMIQDIQRAADTINTASAEIAQGNADLSSRTEEQASSLEETSASMEE
LTGTVKLNADNASQANALASKASEVAVDGGELIQQVVQTMASINESARKIADIIGVIDGIAFQTNILALNAAVEAARAGE
QGRGFAVVASEVRSLAQRSANAAKDIKALISDSVSKIESGNSLVGKSGDTMKEIVIAIKRVNDIMAEIASASNEQAIGID
EISKAVVQMDEMTQQNAALVEEAAAAAESMQSQAQQLSDSVASFRVDDEDEAPRQSNARLAAPKAKAMKPMKQLQPMAKS
RVTEKPKTNAMKPMKQDQDEWEEF
>Mature_663_residues
GIFNIFGNAEASLEKDEERQRYFQLLDNSGNSFMIADSQRNIIYANKAVVRLLQEAEDDIRKELPQFSVAKLIGSNIDIF
HKNPAHQRNLLERLTQSHTAQITIGKRTFRLILTPIITSENKHLGTGVEWIDRTESIEAERATQRIMEALNNTSTNVMIA
DANRTIIYMNRSVEAMLRQSEHEIRQALPHFSVDKILGSSMDIFHRNPAHQASLLDKLDRKYESLIKVASCHFRLTASPI
VSKESERLGTVVEWLDRTIEVQTEQEISRIVTAAAAGDFSQRADTEGKQGFFLMLANNLNSLIETSDRGLQDVARVLMAL
ADGDLTTRIYNDYEGTFNDLKNYSNQTAEKLSFMIQDIQRAADTINTASAEIAQGNADLSSRTEEQASSLEETSASMEEL
TGTVKLNADNASQANALASKASEVAVDGGELIQQVVQTMASINESARKIADIIGVIDGIAFQTNILALNAAVEAARAGEQ
GRGFAVVASEVRSLAQRSANAAKDIKALISDSVSKIESGNSLVGKSGDTMKEIVIAIKRVNDIMAEIASASNEQAIGIDE
ISKAVVQMDEMTQQNAALVEEAAAAAESMQSQAQQLSDSVASFRVDDEDEAPRQSNARLAAPKAKAMKPMKQLQPMAKSR
VTEKPKTNAMKPMKQDQDEWEEF

Specific function: Acts as a receptor for citrate and mediates taxis away from phenol. Also mediates an attractant response to metal-citrate complexes [H]

COG id: COG0840

COG function: function code NT; Methyl-accepting chemotaxis protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1788195, Length=345, Percent_Identity=50.4347826086956, Blast_Score=290, Evalue=2e-79,
Organism=Escherichia coli, GI2367378, Length=313, Percent_Identity=56.2300319488818, Blast_Score=284, Evalue=1e-77,
Organism=Escherichia coli, GI1787690, Length=301, Percent_Identity=53.4883720930233, Blast_Score=282, Evalue=5e-77,
Organism=Escherichia coli, GI1788194, Length=308, Percent_Identity=51.9480519480519, Blast_Score=276, Evalue=3e-75,
Organism=Escherichia coli, GI1789453, Length=248, Percent_Identity=43.9516129032258, Blast_Score=201, Evalue=1e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR003122
- InterPro:   IPR004091
- InterPro:   IPR004089
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF02203 TarH [H]

EC number: NA

Molecular weight: Translated: 72990; Mature: 72859

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS50885 HAMP ; PS50112 PAS ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIFNIFGNAEASLEKDEERQRYFQLLDNSGNSFMIADSQRNIIYANKAVVRLLQEAEDD
CCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHH
IRKELPQFSVAKLIGSNIDIFHKNPAHQRNLLERLTQSHTAQITIGKRTFRLILTPIITS
HHHHCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCC
ENKHLGTGVEWIDRTESIEAERATQRIMEALNNTSTNVMIADANRTIIYMNRSVEAMLRQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEECCHHHHHHHH
SEHEIRQALPHFSVDKILGSSMDIFHRNPAHQASLLDKLDRKYESLIKVASCHFRLTASP
HHHHHHHHCCCCCHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCH
IVSKESERLGTVVEWLDRTIEVQTEQEISRIVTAAAAGDFSQRADTEGKQGFFLMLANNL
HHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEEEEHHHH
NSLIETSDRGLQDVARVLMALADGDLTTRIYNDYEGTFNDLKNYSNQTAEKLSFMIQDIQ
HHHHHHCCCCHHHHHHHHHHHHCCCCEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RAADTINTASAEIAQGNADLSSRTEEQASSLEETSASMEELTGTVKLNADNASQANALAS
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHH
KASEVAVDGGELIQQVVQTMASINESARKIADIIGVIDGIAFQTNILALNAAVEAARAGE
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QGRGFAVVASEVRSLAQRSANAAKDIKALISDSVSKIESGNSLVGKSGDTMKEIVIAIKR
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
VNDIMAEIASASNEQAIGIDEISKAVVQMDEMTQQNAALVEEAAAAAESMQSQAQQLSDS
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VASFRVDDEDEAPRQSNARLAAPKAKAMKPMKQLQPMAKSRVTEKPKTNAMKPMKQDQDE
HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
WEEF
HHCC
>Mature Secondary Structure 
GIFNIFGNAEASLEKDEERQRYFQLLDNSGNSFMIADSQRNIIYANKAVVRLLQEAEDD
CCEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHH
IRKELPQFSVAKLIGSNIDIFHKNPAHQRNLLERLTQSHTAQITIGKRTFRLILTPIITS
HHHHCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCC
ENKHLGTGVEWIDRTESIEAERATQRIMEALNNTSTNVMIADANRTIIYMNRSVEAMLRQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEECCHHHHHHHH
SEHEIRQALPHFSVDKILGSSMDIFHRNPAHQASLLDKLDRKYESLIKVASCHFRLTASP
HHHHHHHHCCCCCHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCH
IVSKESERLGTVVEWLDRTIEVQTEQEISRIVTAAAAGDFSQRADTEGKQGFFLMLANNL
HHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEEEEHHHH
NSLIETSDRGLQDVARVLMALADGDLTTRIYNDYEGTFNDLKNYSNQTAEKLSFMIQDIQ
HHHHHHCCCCHHHHHHHHHHHHCCCCEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RAADTINTASAEIAQGNADLSSRTEEQASSLEETSASMEELTGTVKLNADNASQANALAS
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHH
KASEVAVDGGELIQQVVQTMASINESARKIADIIGVIDGIAFQTNILALNAAVEAARAGE
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QGRGFAVVASEVRSLAQRSANAAKDIKALISDSVSKIESGNSLVGKSGDTMKEIVIAIKR
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
VNDIMAEIASASNEQAIGIDEISKAVVQMDEMTQQNAALVEEAAAAAESMQSQAQQLSDS
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VASFRVDDEDEAPRQSNARLAAPKAKAMKPMKQLQPMAKSRVTEKPKTNAMKPMKQDQDE
HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
WEEF
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8419927; 11677609 [H]