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The map label for this gene is cph2 [H]

Identifier: 160875457

GI number: 160875457

Start: 2765296

End: 2766336

Strand: Reverse

Name: cph2 [H]

Synonym: Sbal195_2345

Alternate gene names: 160875457

Gene position: 2766336-2765296 (Counterclockwise)

Preceding gene: 160875458

Following gene: 160875456

Centisome position: 51.73

GC content: 45.15

Gene sequence:

>1041_bases
ATGGATAAGAAACCCCTTGAATTGGTTTACCCATTTATAACGGAAGCTTTGCGGCTGAGCGAGAATGGTCTAGCGGTGTT
AGACAAGCATAATCATTTTATCTTTTATAATAATACCTTTGCGAAAATGTTTGGTTTTGTTGATCAAGATATGGTCGGCA
AGCATTTTGACGACATGATGCGCTTTGCCTTTACCCATAAACAGGGACCGAAAATTGAGCATGAAACCATAGAGGAATGG
CTCGAACTGATTCATACCAATCAACGTAAATCGGCTTTTCGACGTTTTGAAGTGGATCTGGTGGATGGCTGCTGGTTACA
ACTCTCGGAACAGGTTTATCACAATGGCGATATGGTGATTGTTTGCACGGATATCACCCAGTTAAAACAGGTCGAATTTG
CCCTTAGGAATGCGCAGACTGAATTAAATCGCCTCGCGCTCACCGATGAGTTAACGGGGATTGCCAATCGGCGGCACTTT
TTTCAGCAGTTAGAACATGAAATCAAACGCTTGGGTCGTTTACAATTGCCATTATGCCTAGTGATGATGGATATCGATAA
TTTTAAACTTGTTAATGATCGCTACGGCCATCTAGTCGGTGACAAGATATTGCAACATTTTACCCAATTCATCAGCACTC
GAACGCGTCCCTACGATATTTTTGGCCGCCTCGGCGGTGAAGAGTTTGCACTGCTACTGCCAGAAACCACGGTTGATACC
GCTCAAAAAATCGTAATGCGTATGATGTCATCCCTTGCCAATGAGGACATTTCTGCAATCGTGGCTGATTTTCAATATCA
ATTTTCAGCAGGCGTCAGCGCCTTAACCCCTGTGATTATTCGCCATAGCATTGATAATACTACTGATATTGCAGATGTGG
AGCAGGTTGAATTGCCCGTGGGAACCGGAAGTCAGTGTCGCTCGGATGCTGAAAAGCTGGTGGCCGAGGCCGATAAAGCA
CTCTATCACGCTAAAACCCTCGGGCGGAATCGTGCGGTAATATGGGACGAGGTGATGTTACCTCGCCACAAGCCCAGCTA
A

Upstream 100 bases:

>100_bases
AGTGTGTGATCTAAGGTAGAAGCGCTGTGATCCGCTCAGAACACTGCTACGCTAAACATACCTAAGTTCTTATTTAAATT
TGTCACTGCTAGGAAGGCCG

Downstream 100 bases:

>100_bases
ACAAAGCATTCGACATTCAGTGCATTAGTACTCAAGGGAAACTGTGTTAATCAATCAGCAATATACCCGCCATGGACCCG
ATTACCGATTTGGTGAGCAG

Product: PAS/PAC sensor-containing diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MDKKPLELVYPFITEALRLSENGLAVLDKHNHFIFYNNTFAKMFGFVDQDMVGKHFDDMMRFAFTHKQGPKIEHETIEEW
LELIHTNQRKSAFRRFEVDLVDGCWLQLSEQVYHNGDMVIVCTDITQLKQVEFALRNAQTELNRLALTDELTGIANRRHF
FQQLEHEIKRLGRLQLPLCLVMMDIDNFKLVNDRYGHLVGDKILQHFTQFISTRTRPYDIFGRLGGEEFALLLPETTVDT
AQKIVMRMMSSLANEDISAIVADFQYQFSAGVSALTPVIIRHSIDNTTDIADVEQVELPVGTGSQCRSDAEKLVAEADKA
LYHAKTLGRNRAVIWDEVMLPRHKPS

Sequences:

>Translated_346_residues
MDKKPLELVYPFITEALRLSENGLAVLDKHNHFIFYNNTFAKMFGFVDQDMVGKHFDDMMRFAFTHKQGPKIEHETIEEW
LELIHTNQRKSAFRRFEVDLVDGCWLQLSEQVYHNGDMVIVCTDITQLKQVEFALRNAQTELNRLALTDELTGIANRRHF
FQQLEHEIKRLGRLQLPLCLVMMDIDNFKLVNDRYGHLVGDKILQHFTQFISTRTRPYDIFGRLGGEEFALLLPETTVDT
AQKIVMRMMSSLANEDISAIVADFQYQFSAGVSALTPVIIRHSIDNTTDIADVEQVELPVGTGSQCRSDAEKLVAEADKA
LYHAKTLGRNRAVIWDEVMLPRHKPS
>Mature_346_residues
MDKKPLELVYPFITEALRLSENGLAVLDKHNHFIFYNNTFAKMFGFVDQDMVGKHFDDMMRFAFTHKQGPKIEHETIEEW
LELIHTNQRKSAFRRFEVDLVDGCWLQLSEQVYHNGDMVIVCTDITQLKQVEFALRNAQTELNRLALTDELTGIANRRHF
FQQLEHEIKRLGRLQLPLCLVMMDIDNFKLVNDRYGHLVGDKILQHFTQFISTRTRPYDIFGRLGGEEFALLLPETTVDT
AQKIVMRMMSSLANEDISAIVADFQYQFSAGVSALTPVIIRHSIDNTTDIADVEQVELPVGTGSQCRSDAEKLVAEADKA
LYHAKTLGRNRAVIWDEVMLPRHKPS

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=193, Percent_Identity=31.0880829015544, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1788381, Length=325, Percent_Identity=25.2307692307692, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1787262, Length=192, Percent_Identity=29.6875, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787816, Length=189, Percent_Identity=30.1587301587302, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788085, Length=214, Percent_Identity=32.2429906542056, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87081881, Length=224, Percent_Identity=30.8035714285714, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI145693134, Length=188, Percent_Identity=30.3191489361702, Blast_Score=85, Evalue=9e-18,
Organism=Escherichia coli, GI1786584, Length=202, Percent_Identity=28.2178217821782, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787541, Length=235, Percent_Identity=26.3829787234043, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87081977, Length=95, Percent_Identity=38.9473684210526, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI87081974, Length=155, Percent_Identity=27.741935483871, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788956, Length=129, Percent_Identity=31.7829457364341, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 39829; Mature: 39829

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: PS50112 PAS ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKKPLELVYPFITEALRLSENGLAVLDKHNHFIFYNNTFAKMFGFVDQDMVGKHFDDMM
CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCHHHHHHCCCCHHHHHHHHHHHH
RFAFTHKQGPKIEHETIEEWLELIHTNQRKSAFRRFEVDLVDGCWLQLSEQVYHNGDMVI
HHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
VCTDITQLKQVEFALRNAQTELNRLALTDELTGIANRRHFFQQLEHEIKRLGRLQLPLCL
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHE
VMMDIDNFKLVNDRYGHLVGDKILQHFTQFISTRTRPYDIFGRLGGEEFALLLPETTVDT
EEECCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCEEEECCCCCHHH
AQKIVMRMMSSLANEDISAIVADFQYQFSAGVSALTPVIIRHSIDNTTDIADVEQVELPV
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHEEECC
GTGSQCRSDAEKLVAEADKALYHAKTLGRNRAVIWDEVMLPRHKPS
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCC
>Mature Secondary Structure
MDKKPLELVYPFITEALRLSENGLAVLDKHNHFIFYNNTFAKMFGFVDQDMVGKHFDDMM
CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCHHHHHHCCCCHHHHHHHHHHHH
RFAFTHKQGPKIEHETIEEWLELIHTNQRKSAFRRFEVDLVDGCWLQLSEQVYHNGDMVI
HHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
VCTDITQLKQVEFALRNAQTELNRLALTDELTGIANRRHFFQQLEHEIKRLGRLQLPLCL
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHE
VMMDIDNFKLVNDRYGHLVGDKILQHFTQFISTRTRPYDIFGRLGGEEFALLLPETTVDT
EEECCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCEEEECCCCCHHH
AQKIVMRMMSSLANEDISAIVADFQYQFSAGVSALTPVIIRHSIDNTTDIADVEQVELPV
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHEEECC
GTGSQCRSDAEKLVAEADKALYHAKTLGRNRAVIWDEVMLPRHKPS
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]