| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is luxQ [H]
Identifier: 160875458
GI number: 160875458
Start: 2766523
End: 2768442
Strand: Reverse
Name: luxQ [H]
Synonym: Sbal195_2346
Alternate gene names: 160875458
Gene position: 2768442-2766523 (Counterclockwise)
Preceding gene: 160875459
Following gene: 160875457
Centisome position: 51.77
GC content: 43.39
Gene sequence:
>1920_bases ATGAGCGTTAAATACAGTGCTTGCATCAATATGTTCAGTGGCTTATGGGTCACAATATTAGTGCTGTGGCTAACCTTGTC CCACTCGCTGTATGAGTTTGACGCTATTTACGATAAAAAGGCGCAGGCGGTTTTTACTTCCTCGCGGGATATGTTCATAC AACATAAGATCATGTTGGATGCGCTGAAATCTTTTTTCCACGCGTCGAGTAAGGTGACGTCAGAGGAGTTTGAGATTTTT GCCAAGGATTTACTTAAGATCAAATCTGCCGTCGCTTTTACGCTGACCCCCAGTCTTGAACTGGCCTATATCTCAGATCA GACTATGGCTACTGAGCTTAAACAGTTTGAGCTAGTCAAGGAGCCTAAAGGGGAGCTTAAGGCGAGCCTTGCCAATTACA CTTTGGCTGTGGTGGCCATTGATAAGCCTAATATGCCTTATCTCGTTTATGCCGTTTCTCATCAGCGGATACTCGCGCGA ATCGAACAAGAGCAGGGCGTTTGCATTACCTATCAATTTGAACAGTCATTTGAGCAGTCGTTACTGCAAAACTCATTCTG TAATCTTAAGTTAGCCAGCGGCCTATTTTCATTATTTAATTACTCTGATAGCCAAACCTTAGCTATCCCTGAATATCAAA CCCGAGTGAGTTTACAGGTACAATATCAAGTGCCGCAAAAAGAAATTATCGAGCTTATCGTGATCATCCTACTGATTGCA GCCCTTGGCATAGTTTTGTCCTTCCTTTTGTACTTTAAGTCTAAAAATCAGCAGGTTGTTGAGCAAATTAAGCTCGACAA TCGCGCTAAATTAGCCGTGCTTTCGAGCATTAATCATGAGATCCGCACCCCAATCAATGCCATTCTTGGCTATAGTCGCA TGCTAAAAAAAGCCCTCTCACAACCACAGGAACTGGATAAAATCGTCGATAAAATGGCCTGGTCTGCCAACTTACTCTAT TCGGTTGCCGAAAATACCTTAAATTACAGTAAGGCAGAAGCTGGGCAGTTAAAACTGAATTTACATTCGGTGAACTTACA CGAGTATGTGGGCAATATTCAGGACTATTATCGTGCATTTAGTGCAACCTCCGGCAAACGTTTACACATTGTAGTAAGTG AGTCTTTGCCGCAGTTTATCGAACTCGATGGGACTAAGTTATTCCAACTCATGACCAACATTATCAATAATGCGTTCAAA TACAGTACGGGTAGCGAAGTGCATTGCTATATGGATTTACACCTTAAAGCGAATGCTAAAAATCAGCGCCCTGTGCTTAG GGTGCTGATCCGCGATTTTGGCGATGGTATGTCAAAGGAAGCGCAGCGCGCTTTAGTCGATCCCTTTATGCACGCCGCTA ACTCACCTATTGCCGCGACATCGGGTATGGGACTCGGGCTCTATACGTGTAATCGATTGCTTGAGCAGATTGGCGGTCGG TTTAGGCTGCGCAGTCAAAAGGGCAAAGGTACCACAGTGTTACTGCATTTCCCCTGTCAGCTCAGCGTAGTGAAAGAACG ATTAACACTTCAATATGATCAACAAAAAGTGCTGATCATAGATGACAATCTGTTTAATCTTGAAATTTGTCGCGCCATGC TGGAGCACTATCATTTTCAAACCTTCAGTACTGATAATACAGAGCAAGCACTGAAGATGTTGGTTAACCATTTGCCACAG ATTGTCATTGTGGATTACCGTTTACAAGGAATGAACGGTTTACAACTAGTCAGGCAGATGCAGCAAGTATTACAAAGCCT GGAGAGTAATAGCCCTATTGAACATCAGTGTCGTTTCTTTTTGCTCTCCGCGAATGACTGCGATGATATTCCCGAGTTAG CGTCGTTTCCTGAGGTGCATTTCATGCAGAAACCATTTAGTGCCGAAGTCTTTCTCAGCAAATTAGCGGTAAAAGAGTAA
Upstream 100 bases:
>100_bases TTGCAGCTTAAGAATACCGTGCCTATGGCTAATTCTTGCGAGCGAGAACAGTTTAATCATCAGCTAAACGATTTACTTAA TACCGTAATGGATTACGCCA
Downstream 100 bases:
>100_bases ATCATCAATGCATTGAATGTAATCTTGAAATCACATTAGCTGACTTCATCGAATTGAACAGCAATGGTACAAATACCTTT GCGGTTAGTGTGTGATCTAA
Product: integral membrane sensor hybrid histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 639; Mature: 638
Protein sequence:
>639_residues MSVKYSACINMFSGLWVTILVLWLTLSHSLYEFDAIYDKKAQAVFTSSRDMFIQHKIMLDALKSFFHASSKVTSEEFEIF AKDLLKIKSAVAFTLTPSLELAYISDQTMATELKQFELVKEPKGELKASLANYTLAVVAIDKPNMPYLVYAVSHQRILAR IEQEQGVCITYQFEQSFEQSLLQNSFCNLKLASGLFSLFNYSDSQTLAIPEYQTRVSLQVQYQVPQKEIIELIVIILLIA ALGIVLSFLLYFKSKNQQVVEQIKLDNRAKLAVLSSINHEIRTPINAILGYSRMLKKALSQPQELDKIVDKMAWSANLLY SVAENTLNYSKAEAGQLKLNLHSVNLHEYVGNIQDYYRAFSATSGKRLHIVVSESLPQFIELDGTKLFQLMTNIINNAFK YSTGSEVHCYMDLHLKANAKNQRPVLRVLIRDFGDGMSKEAQRALVDPFMHAANSPIAATSGMGLGLYTCNRLLEQIGGR FRLRSQKGKGTTVLLHFPCQLSVVKERLTLQYDQQKVLIIDDNLFNLEICRAMLEHYHFQTFSTDNTEQALKMLVNHLPQ IVIVDYRLQGMNGLQLVRQMQQVLQSLESNSPIEHQCRFFLLSANDCDDIPELASFPEVHFMQKPFSAEVFLSKLAVKE
Sequences:
>Translated_639_residues MSVKYSACINMFSGLWVTILVLWLTLSHSLYEFDAIYDKKAQAVFTSSRDMFIQHKIMLDALKSFFHASSKVTSEEFEIF AKDLLKIKSAVAFTLTPSLELAYISDQTMATELKQFELVKEPKGELKASLANYTLAVVAIDKPNMPYLVYAVSHQRILAR IEQEQGVCITYQFEQSFEQSLLQNSFCNLKLASGLFSLFNYSDSQTLAIPEYQTRVSLQVQYQVPQKEIIELIVIILLIA ALGIVLSFLLYFKSKNQQVVEQIKLDNRAKLAVLSSINHEIRTPINAILGYSRMLKKALSQPQELDKIVDKMAWSANLLY SVAENTLNYSKAEAGQLKLNLHSVNLHEYVGNIQDYYRAFSATSGKRLHIVVSESLPQFIELDGTKLFQLMTNIINNAFK YSTGSEVHCYMDLHLKANAKNQRPVLRVLIRDFGDGMSKEAQRALVDPFMHAANSPIAATSGMGLGLYTCNRLLEQIGGR FRLRSQKGKGTTVLLHFPCQLSVVKERLTLQYDQQKVLIIDDNLFNLEICRAMLEHYHFQTFSTDNTEQALKMLVNHLPQ IVIVDYRLQGMNGLQLVRQMQQVLQSLESNSPIEHQCRFFLLSANDCDDIPELASFPEVHFMQKPFSAEVFLSKLAVKE >Mature_638_residues SVKYSACINMFSGLWVTILVLWLTLSHSLYEFDAIYDKKAQAVFTSSRDMFIQHKIMLDALKSFFHASSKVTSEEFEIFA KDLLKIKSAVAFTLTPSLELAYISDQTMATELKQFELVKEPKGELKASLANYTLAVVAIDKPNMPYLVYAVSHQRILARI EQEQGVCITYQFEQSFEQSLLQNSFCNLKLASGLFSLFNYSDSQTLAIPEYQTRVSLQVQYQVPQKEIIELIVIILLIAA LGIVLSFLLYFKSKNQQVVEQIKLDNRAKLAVLSSINHEIRTPINAILGYSRMLKKALSQPQELDKIVDKMAWSANLLYS VAENTLNYSKAEAGQLKLNLHSVNLHEYVGNIQDYYRAFSATSGKRLHIVVSESLPQFIELDGTKLFQLMTNIINNAFKY STGSEVHCYMDLHLKANAKNQRPVLRVLIRDFGDGMSKEAQRALVDPFMHAANSPIAATSGMGLGLYTCNRLLEQIGGRF RLRSQKGKGTTVLLHFPCQLSVVKERLTLQYDQQKVLIIDDNLFNLEICRAMLEHYHFQTFSTDNTEQALKMLVNHLPQI VIVDYRLQGMNGLQLVRQMQQVLQSLESNSPIEHQCRFFLLSANDCDDIPELASFPEVHFMQKPFSAEVFLSKLAVKE
Specific function: At low cell density, in absence of autoinducer has a kinase activity, and autophosphorylates on a histidine residue. The phosphoryl group is then transferred to an aspartate residue in the response regulator domain. The phosphoryl group is transferred to
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788713, Length=331, Percent_Identity=27.190332326284, Blast_Score=108, Evalue=8e-25, Organism=Escherichia coli, GI48994928, Length=372, Percent_Identity=25, Blast_Score=107, Evalue=3e-24, Organism=Escherichia coli, GI1789149, Length=235, Percent_Identity=28.5106382978723, Blast_Score=105, Evalue=1e-23, Organism=Escherichia coli, GI87081816, Length=332, Percent_Identity=26.8072289156627, Blast_Score=99, Evalue=1e-21, Organism=Escherichia coli, GI145693157, Length=242, Percent_Identity=25.6198347107438, Blast_Score=98, Evalue=1e-21, Organism=Escherichia coli, GI1790436, Length=287, Percent_Identity=23.6933797909408, Blast_Score=72, Evalue=9e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR015387 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 - ProDom: PD142495 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF09308 LuxQ-periplasm; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 72648; Mature: 72517
Theoretical pI: Translated: 7.61; Mature: 7.61
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVKYSACINMFSGLWVTILVLWLTLSHSLYEFDAIYDKKAQAVFTSSRDMFIQHKIMLD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCCHHHHHHHHHH ALKSFFHASSKVTSEEFEIFAKDLLKIKSAVAFTLTPSLELAYISDQTMATELKQFELVK HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEEECCCEEEEEECCHHHHHHHHHHHHHH EPKGELKASLANYTLAVVAIDKPNMPYLVYAVSHQRILARIEQEQGVCITYQFEQSFEQS CCHHHHHHHHCCEEEEEEEECCCCCCEEEEEECHHHHHHHHHHCCCEEEEEHHHHHHHHH LLQNSFCNLKLASGLFSLFNYSDSQTLAIPEYQTRVSLQVQYQVPQKEIIELIVIILLIA HHHCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCEEEEEEEEECCHHHHHHHHHHHHHHH ALGIVLSFLLYFKSKNQQVVEQIKLDNRAKLAVLSSINHEIRTPINAILGYSRMLKKALS HHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHC QPQELDKIVDKMAWSANLLYSVAENTLNYSKAEAGQLKLNLHSVNLHEYVGNIQDYYRAF CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCHHHHHCCHHHHHHHH SATSGKRLHIVVSESLPQFIELDGTKLFQLMTNIINNAFKYSTGSEVHCYMDLHLKANAK HCCCCCEEEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCC NQRPVLRVLIRDFGDGMSKEAQRALVDPFMHAANSPIAATSGMGLGLYTCNRLLEQIGGR CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHCCCC FRLRSQKGKGTTVLLHFPCQLSVVKERLTLQYDQQKVLIIDDNLFNLEICRAMLEHYHFQ EEEECCCCCCCEEEEECCCHHHHHHHHHHEEECCCEEEEEECCCCCHHHHHHHHHHHCCE TFSTDNTEQALKMLVNHLPQIVIVDYRLQGMNGLQLVRQMQQVLQSLESNSPIEHQCRFF ECCCCCHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEE LLSANDCDDIPELASFPEVHFMQKPFSAEVFLSKLAVKE EEECCCCCCCHHHHCCCCHHHHCCCCHHHHHHHHHHCCC >Mature Secondary Structure SVKYSACINMFSGLWVTILVLWLTLSHSLYEFDAIYDKKAQAVFTSSRDMFIQHKIMLD CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCCHHHHHHHHHH ALKSFFHASSKVTSEEFEIFAKDLLKIKSAVAFTLTPSLELAYISDQTMATELKQFELVK HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEEECCCEEEEEECCHHHHHHHHHHHHHH EPKGELKASLANYTLAVVAIDKPNMPYLVYAVSHQRILARIEQEQGVCITYQFEQSFEQS CCHHHHHHHHCCEEEEEEEECCCCCCEEEEEECHHHHHHHHHHCCCEEEEEHHHHHHHHH LLQNSFCNLKLASGLFSLFNYSDSQTLAIPEYQTRVSLQVQYQVPQKEIIELIVIILLIA HHHCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCEEEEEEEEECCHHHHHHHHHHHHHHH ALGIVLSFLLYFKSKNQQVVEQIKLDNRAKLAVLSSINHEIRTPINAILGYSRMLKKALS HHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHC QPQELDKIVDKMAWSANLLYSVAENTLNYSKAEAGQLKLNLHSVNLHEYVGNIQDYYRAF CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCHHHHHCCHHHHHHHH SATSGKRLHIVVSESLPQFIELDGTKLFQLMTNIINNAFKYSTGSEVHCYMDLHLKANAK HCCCCCEEEEEECCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCC NQRPVLRVLIRDFGDGMSKEAQRALVDPFMHAANSPIAATSGMGLGLYTCNRLLEQIGGR CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHCCCC FRLRSQKGKGTTVLLHFPCQLSVVKERLTLQYDQQKVLIIDDNLFNLEICRAMLEHYHFQ EEEECCCCCCCEEEEECCCHHHHHHHHHHEEECCCEEEEEECCCCCHHHHHHHHHHHCCE TFSTDNTEQALKMLVNHLPQIVIVDYRLQGMNGLQLVRQMQQVLQSLESNSPIEHQCRFF ECCCCCHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEE LLSANDCDDIPELASFPEVHFMQKPFSAEVFLSKLAVKE EEECCCCCCCHHHHCCCCHHHHCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA