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The map label for this gene is xerD [C]

Identifier: 160874839

GI number: 160874839

Start: 2070827

End: 2071459

Strand: Direct

Name: xerD [C]

Synonym: Sbal195_1723

Alternate gene names: 160874839

Gene position: 2070827-2071459 (Clockwise)

Preceding gene: 160874838

Following gene: 160874840

Centisome position: 38.73

GC content: 50.08

Gene sequence:

>633_bases
ATGGGGCTACCATGTCTTCTCATCGAATTAAGCAACAAAGCCCCTAAACGTCCACACAAGCTGCCGCAATTGCTTAGCTG
CCAAGATATCGCGGCATTGCTGTGTCACTGTCAAAACCTGAAACAACGCGCTATGTTGGCGCTATGTTATGGTTGTGGTT
TGCGTGTCAGTGAGTTAACCCATATTAAGGTTGCTGATATCGATGGGCAGCGGCAGTTGCTCAAAGTGTGTCAAGGGAAA
GGGGCCTACGACAGGTTGGTGATTATTTCACCGACCTTGCTCACCCTGTTGCGTCAGTATTGGCGAGCGTATCATCCCGT
CGAATGGTTGTTTGCCTCGACCTATCATGATGTGGTTTATCCGCTGCATGAGTCGACCTTTCGTAAAGCGTTAGCGAAGG
CGGCCCGCTTAGCGAGTATCACTAAGCCATGCAGTCCACACAGCCTAAGGCATGCTTATGCGACCCATCAATTACAAGCG
GGTATGCCACTTCATCAATTACAGGCTCAACTTGGTCATCACAGTATTAAATCCACCGAGCGCTACTTGCATTGGTCGCC
GGAATTGGGTCATCAAGGCTGTGACTTGCTAGCAAGTCTTGGGGGGATGCCATGGCAACCTCCTACCATGTAA

Upstream 100 bases:

>100_bases
CGCTCAAGTTGGTGAGACTTACGCTATGATCAAAGCGCTGAACAAGCTTACAGGGCTAGGTATGCCTGAAACTCAGTATG
TTGTTTAAGAACTGAACAAC

Downstream 100 bases:

>100_bases
GCGATATCCTTCATCAGCACTTAGCCCACTATCAACAGCAGCATAAACTGACCGAACAACAAGCCTTAGTCTGCCAGCAT
ATTCAACAGTGTCGCACGCA

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MGLPCLLIELSNKAPKRPHKLPQLLSCQDIAALLCHCQNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGK
GAYDRLVIISPTLLTLLRQYWRAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYATHQLQA
GMPLHQLQAQLGHHSIKSTERYLHWSPELGHQGCDLLASLGGMPWQPPTM

Sequences:

>Translated_210_residues
MGLPCLLIELSNKAPKRPHKLPQLLSCQDIAALLCHCQNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGK
GAYDRLVIISPTLLTLLRQYWRAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYATHQLQA
GMPLHQLQAQLGHHSIKSTERYLHWSPELGHQGCDLLASLGGMPWQPPTM
>Mature_209_residues
GLPCLLIELSNKAPKRPHKLPQLLSCQDIAALLCHCQNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKG
AYDRLVIISPTLLTLLRQYWRAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYATHQLQAG
MPLHQLQAQLGHHSIKSTERYLHWSPELGHQGCDLLASLGGMPWQPPTM

Specific function: May function as an integrase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=187, Percent_Identity=34.7593582887701, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1790244, Length=181, Percent_Identity=29.2817679558011, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 23607; Mature: 23476

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLPCLLIELSNKAPKRPHKLPQLLSCQDIAALLCHCQNLKQRAMLALCYGCGLRVSELT
CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEE
HIKVADIDGQRQLLKVCQGKGAYDRLVIISPTLLTLLRQYWRAYHPVEWLFASTYHDVVY
EEEEECCCCHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
PLHESTFRKALAKAARLASITKPCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTE
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
RYLHWSPELGHQGCDLLASLGGMPWQPPTM
HHEECCCCCCCHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
GLPCLLIELSNKAPKRPHKLPQLLSCQDIAALLCHCQNLKQRAMLALCYGCGLRVSELT
CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEE
HIKVADIDGQRQLLKVCQGKGAYDRLVIISPTLLTLLRQYWRAYHPVEWLFASTYHDVVY
EEEEECCCCHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
PLHESTFRKALAKAARLASITKPCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTE
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
RYLHWSPELGHQGCDLLASLGGMPWQPPTM
HHEECCCCCCCHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]