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The map label for this gene is cdaR [H]

Identifier: 160874724

GI number: 160874724

Start: 1937716

End: 1938957

Strand: Reverse

Name: cdaR [H]

Synonym: Sbal195_1607

Alternate gene names: 160874724

Gene position: 1938957-1937716 (Counterclockwise)

Preceding gene: 160874725

Following gene: 160874723

Centisome position: 36.26

GC content: 47.34

Gene sequence:

>1242_bases
ATGTATCTGCTTGATTCTGCCATCGCTAAACAGATTGTGAGTCGCACAATGAAAATCATTGGCCACAATATCAATGTGAT
GAACGGCCAAGGAGTAATTTTAGGCTCAGGCGATCCTAAACGTATTGGTTCAACCCACGAAGGTGCGCTGCTGGCCATTG
CCCAAAATCGCAATGTGGAGATAAGCCAAGAAGTGGCCTCTGGGCTGCATGGCGTAAAACCTGGGATCAATTTACCCTTG
CATTATCAAGGACAAATCATAGGTGTTGTCGGCATTACTGGCGATCCAAGTGAGCTTACCCATTACGGTGAATTACTCAA
AATGACCGCCGAAATGATTGTTGAACAAGCTAACCTGCAGGATAAATTGCAGTGGGAGAATCGCCAGCGCGAAGAGTTTA
TTTTGCAGTTGATCAAAGCTGAAACCGACGATGATGAGCAGTTGCACCGCTGGGCAAAACAGTTAGAAATTGATATCAGC
CTGCCACGGGTCGCGGCCATTATTGAGATCAGCGAGAAGCACACCCAAAAACAACATTTAAAGACTGACGCCAACTCATC
GGCCTTGTACTTAGCAGAAGCTTCCGCTCAGTCCGCCGATGAACGCAGCCCCAGAGTCAGTGAAACCCTCAAGCAAGTGC
TGCATCTATTGCAATACCCTGACCGAGGCAACTTGATTGCCATGACCTCAATGTCGCAATTGGTGATCCTAAAGCCTGCT
TTTTTAGATGGTAAACAATGGGATCCTGAGCTTGAAAATCAGCGTATCGACAAGCTGTTACAACGCTTACCCGCCCAAAT
GGATTTAAACTTTAAAATTGCCTTGGGCCACTTTTTCCCCGAAAAAGGCGGTATTGCGCGCTCCTATCAAACCGCGCAGG
AAACCTTAGCCCTAGGTAAACAACGCAATGCTGAGGGCAATAAATACCTGTTCGAAGATTACTCCCTGCAAGTACTACTG
GCGGGACTTAAACATGACTGGCGCGGTCAGGCACTAGCGTCACCCTATCAGCAACTCGCCATGGCCGATAAAAACGGCCA
GTTACGCAAAACTTTAGCCGCCTATATCACTCACTTTGGTGATGCGCAGCAATGTGCGAATGCGCTGTTTATACACCGCA
ACACACTTAGATATCGCCTCGATAAAATTCAGCAAATCACCCAAGCCGATATCCAATCCCTGCATGGATTATTGAGCCTG
TATCTTGGACAACTGCTTGATACTTCGGCAACCCCAAGATAA

Upstream 100 bases:

>100_bases
TCTGGCTTAAGCAGCATCCTGAGTTTGAACGCGATATGCTACCCAGATTAAGAATGCGTATTGCATCCCTGTTAAACCTT
CAACCACTCTAGGCACTTAT

Downstream 100 bases:

>100_bases
CGGGTGTTATTTCCTACGTCATTGAGTCAATAAAGCATTTATTAACAGATCGATTGAAAGATTTATACCGTATCCCCTTT
CCTATAGTTTCTAATAACAA

Product: transcriptional regulator CdaR

Products: NA

Alternate protein names: Sugar diacid regulator [H]

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MYLLDSAIAKQIVSRTMKIIGHNINVMNGQGVILGSGDPKRIGSTHEGALLAIAQNRNVEISQEVASGLHGVKPGINLPL
HYQGQIIGVVGITGDPSELTHYGELLKMTAEMIVEQANLQDKLQWENRQREEFILQLIKAETDDDEQLHRWAKQLEIDIS
LPRVAAIIEISEKHTQKQHLKTDANSSALYLAEASAQSADERSPRVSETLKQVLHLLQYPDRGNLIAMTSMSQLVILKPA
FLDGKQWDPELENQRIDKLLQRLPAQMDLNFKIALGHFFPEKGGIARSYQTAQETLALGKQRNAEGNKYLFEDYSLQVLL
AGLKHDWRGQALASPYQQLAMADKNGQLRKTLAAYITHFGDAQQCANALFIHRNTLRYRLDKIQQITQADIQSLHGLLSL
YLGQLLDTSATPR

Sequences:

>Translated_413_residues
MYLLDSAIAKQIVSRTMKIIGHNINVMNGQGVILGSGDPKRIGSTHEGALLAIAQNRNVEISQEVASGLHGVKPGINLPL
HYQGQIIGVVGITGDPSELTHYGELLKMTAEMIVEQANLQDKLQWENRQREEFILQLIKAETDDDEQLHRWAKQLEIDIS
LPRVAAIIEISEKHTQKQHLKTDANSSALYLAEASAQSADERSPRVSETLKQVLHLLQYPDRGNLIAMTSMSQLVILKPA
FLDGKQWDPELENQRIDKLLQRLPAQMDLNFKIALGHFFPEKGGIARSYQTAQETLALGKQRNAEGNKYLFEDYSLQVLL
AGLKHDWRGQALASPYQQLAMADKNGQLRKTLAAYITHFGDAQQCANALFIHRNTLRYRLDKIQQITQADIQSLHGLLSL
YLGQLLDTSATPR
>Mature_413_residues
MYLLDSAIAKQIVSRTMKIIGHNINVMNGQGVILGSGDPKRIGSTHEGALLAIAQNRNVEISQEVASGLHGVKPGINLPL
HYQGQIIGVVGITGDPSELTHYGELLKMTAEMIVEQANLQDKLQWENRQREEFILQLIKAETDDDEQLHRWAKQLEIDIS
LPRVAAIIEISEKHTQKQHLKTDANSSALYLAEASAQSADERSPRVSETLKQVLHLLQYPDRGNLIAMTSMSQLVILKPA
FLDGKQWDPELENQRIDKLLQRLPAQMDLNFKIALGHFFPEKGGIARSYQTAQETLALGKQRNAEGNKYLFEDYSLQVLL
AGLKHDWRGQALASPYQQLAMADKNGQLRKTLAAYITHFGDAQQCANALFIHRNTLRYRLDKIQQITQADIQSLHGLLSL
YLGQLLDTSATPR

Specific function: Seems to regulate the expression of the operons for the enzymes involved in D-galactarate, D-glucarate and D-glycerate utilization [H]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=404, Percent_Identity=43.0693069306931, Blast_Score=329, Evalue=2e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 46231; Mature: 46231

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLLDSAIAKQIVSRTMKIIGHNINVMNGQGVILGSGDPKRIGSTHEGALLAIAQNRNVE
CCCHHHHHHHHHHHHHHHHHCCCCEEECCCEEEECCCCCHHCCCCCCCEEEEEECCCCCE
ISQEVASGLHGVKPGINLPLHYQGQIIGVVGITGDPSELTHYGELLKMTAEMIVEQANLQ
EHHHHHCCCCCCCCCCCCCEEECCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCH
DKLQWENRQREEFILQLIKAETDDDEQLHRWAKQLEIDISLPRVAAIIEISEKHTQKQHL
HHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHH
KTDANSSALYLAEASAQSADERSPRVSETLKQVLHLLQYPDRGNLIAMTSMSQLVILKPA
HCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEECC
FLDGKQWDPELENQRIDKLLQRLPAQMDLNFKIALGHFFPEKGGIARSYQTAQETLALGK
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCC
QRNAEGNKYLFEDYSLQVLLAGLKHDWRGQALASPYQQLAMADKNGQLRKTLAAYITHFG
CCCCCCCEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
DAQQCANALFIHRNTLRYRLDKIQQITQADIQSLHGLLSLYLGQLLDTSATPR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MYLLDSAIAKQIVSRTMKIIGHNINVMNGQGVILGSGDPKRIGSTHEGALLAIAQNRNVE
CCCHHHHHHHHHHHHHHHHHCCCCEEECCCEEEECCCCCHHCCCCCCCEEEEEECCCCCE
ISQEVASGLHGVKPGINLPLHYQGQIIGVVGITGDPSELTHYGELLKMTAEMIVEQANLQ
EHHHHHCCCCCCCCCCCCCEEECCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCH
DKLQWENRQREEFILQLIKAETDDDEQLHRWAKQLEIDISLPRVAAIIEISEKHTQKQHL
HHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHH
KTDANSSALYLAEASAQSADERSPRVSETLKQVLHLLQYPDRGNLIAMTSMSQLVILKPA
HCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEECC
FLDGKQWDPELENQRIDKLLQRLPAQMDLNFKIALGHFFPEKGGIARSYQTAQETLALGK
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCC
QRNAEGNKYLFEDYSLQVLLAGLKHDWRGQALASPYQQLAMADKNGQLRKTLAAYITHFG
CCCCCCCEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
DAQQCANALFIHRNTLRYRLDKIQQITQADIQSLHGLLSLYLGQLLDTSATPR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503; 10762278 [H]