Definition | Shewanella baltica OS195 chromosome, complete genome. |
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Accession | NC_009997 |
Length | 5,347,283 |
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The map label for this gene is 160874725
Identifier: 160874725
GI number: 160874725
Start: 1938966
End: 1939664
Strand: Reverse
Name: 160874725
Synonym: Sbal195_1608
Alternate gene names: NA
Gene position: 1939664-1938966 (Counterclockwise)
Preceding gene: 160874726
Following gene: 160874724
Centisome position: 36.27
GC content: 49.93
Gene sequence:
>699_bases ATGACAGCGCTGCTGACAAAAATTAACGCCTGTACTTTATGTCAGGCTGATTTGCCCTTAGCGCCCAAACCGATATTGCA GGCCAGTAGCCAAGCGCGGATTTTGATTGCCGGCCAAGCTCCGGGCGTGAAAACGCACCATAAAGGCATCCCATTTGACG ATGCCAGCGGTGAACGGCTGCGTACTTGGTTGAATGTCACCCGTGAGCAATTTTACGACCCTGCCCTTTTTGCCATTGTC CCTATGGGATTTTGTTTTCCGGGCAGTATCGAAAAAAACGGTAAAAAGCAGGGTGATAAACCACCGCGCCCCGAATGCGC CGCCACTTGGCATCAAGCCTTACTTGCGTTAATGCCACAAATTGAGCTAATCGTGATCCTCGGCCAATATGCCATCGATT ATCATCTACCGCGTGAATCGTCCGTGGCCATAAACCTCACTTCGCCGCTCACTAAGCCTCAAACAACCCACATAAATGTA TCGTCCAGCGCCAAAGCAAAAACCATCCCCAAACTGAAACCCATCACAGTGACCCAAGCGTGCGCGCAGTGGCAGCAATA TTGGCCTAAATATTTTGTCTTACCGCACCCGAGCCCACGCAATAATCTCTGGCTTAAGCAGCATCCTGAGTTTGAACGCG ATATGCTACCCAGATTAAGAATGCGTATTGCATCCCTGTTAAACCTTCAACCACTCTAG
Upstream 100 bases:
>100_bases TGACCACTGACTAAGACAAATTTTGACTAAAACACATTGCACTAACGCGCCGGCGTCATCACCGCTAAGCGAAACGGTAT CGCCGCCCAGTTCTGCATCA
Downstream 100 bases:
>100_bases GCACTTATATGTATCTGCTTGATTCTGCCATCGCTAAACAGATTGTGAGTCGCACAATGAAAATCATTGGCCACAATATC AATGTGATGAACGGCCAAGG
Product: phage SPO1 DNA polymerase domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 232; Mature: 231
Protein sequence:
>232_residues MTALLTKINACTLCQADLPLAPKPILQASSQARILIAGQAPGVKTHHKGIPFDDASGERLRTWLNVTREQFYDPALFAIV PMGFCFPGSIEKNGKKQGDKPPRPECAATWHQALLALMPQIELIVILGQYAIDYHLPRESSVAINLTSPLTKPQTTHINV SSSAKAKTIPKLKPITVTQACAQWQQYWPKYFVLPHPSPRNNLWLKQHPEFERDMLPRLRMRIASLLNLQPL
Sequences:
>Translated_232_residues MTALLTKINACTLCQADLPLAPKPILQASSQARILIAGQAPGVKTHHKGIPFDDASGERLRTWLNVTREQFYDPALFAIV PMGFCFPGSIEKNGKKQGDKPPRPECAATWHQALLALMPQIELIVILGQYAIDYHLPRESSVAINLTSPLTKPQTTHINV SSSAKAKTIPKLKPITVTQACAQWQQYWPKYFVLPHPSPRNNLWLKQHPEFERDMLPRLRMRIASLLNLQPL >Mature_231_residues TALLTKINACTLCQADLPLAPKPILQASSQARILIAGQAPGVKTHHKGIPFDDASGERLRTWLNVTREQFYDPALFAIVP MGFCFPGSIEKNGKKQGDKPPRPECAATWHQALLALMPQIELIVILGQYAIDYHLPRESSVAINLTSPLTKPQTTHINVS SSAKAKTIPKLKPITVTQACAQWQQYWPKYFVLPHPSPRNNLWLKQHPEFERDMLPRLRMRIASLLNLQPL
Specific function: Unknown
COG id: COG1573
COG function: function code L; Uracil-DNA glycosylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005122 [H]
Pfam domain/function: PF03167 UDG [H]
EC number: NA
Molecular weight: Translated: 26010; Mature: 25879
Theoretical pI: Translated: 10.11; Mature: 10.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTALLTKINACTLCQADLPLAPKPILQASSQARILIAGQAPGVKTHHKGIPFDDASGERL CCCHHHHCCCCEEEECCCCCCCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHH RTWLNVTREQFYDPALFAIVPMGFCFPGSIEKNGKKQGDKPPRPECAATWHQALLALMPQ HHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC IELIVILGQYAIDYHLPRESSVAINLTSPLTKPQTTHINVSSSAKAKTIPKLKPITVTQA CEEEEEEECHHEEEECCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH CAQWQQYWPKYFVLPHPSPRNNLWLKQHPEFERDMLPRLRMRIASLLNLQPL HHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TALLTKINACTLCQADLPLAPKPILQASSQARILIAGQAPGVKTHHKGIPFDDASGERL CCHHHHCCCCEEEECCCCCCCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHH RTWLNVTREQFYDPALFAIVPMGFCFPGSIEKNGKKQGDKPPRPECAATWHQALLALMPQ HHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC IELIVILGQYAIDYHLPRESSVAINLTSPLTKPQTTHINVSSSAKAKTIPKLKPITVTQA CEEEEEEECHHEEEECCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHH CAQWQQYWPKYFVLPHPSPRNNLWLKQHPEFERDMLPRLRMRIASLLNLQPL HHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]