Definition | Shewanella baltica OS195 chromosome, complete genome. |
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Accession | NC_009997 |
Length | 5,347,283 |
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The map label for this gene is ybhG [C]
Identifier: 160874666
GI number: 160874666
Start: 1867888
End: 1869006
Strand: Direct
Name: ybhG [C]
Synonym: Sbal195_1549
Alternate gene names: 160874666
Gene position: 1867888-1869006 (Clockwise)
Preceding gene: 160874665
Following gene: 160874667
Centisome position: 34.93
GC content: 53.89
Gene sequence:
>1119_bases ATGAGCTCAACGAAAGGTTTGACTATGTTGAATGACCAAGATTTTAGTCGCAATCGTTTCAGTAAAAGCAACTCAAGTAA CAACAGGTTAAGTAGCAGCAAGTTAAGCGACAGCAAGTTAAGCAACAGCAAGTTAAGAAACAATAAGTTAACTAATCAAA CCGCATTAGCTAAGAGAGTCGCGACAGGTGTCGTTTTAGGCTGTTTGCTGCTGCAGTTAGCGGCTTGCACTCAAGAGTCG CCGAGCGTTCTTGGCACAGTCGAGCGTGACAGACTGACACTGACCGCGCCCGTGGGTGAGTTGATTACTCAGGTAAATGT GGTTGAAGGTCAGCAGGTTAAGGCGGGCGAAGTGCTACTCACACTCGATTCGACCTCGGCCAATGCGCGCCTTGCCCTGC GTCAAGCCGAGCTTGAACAGGCCAAGGCTAAACTTTCTGAGGCGGTGACTGGCGCGCGTTTAGAGGATATAGAACGCGCC AAGGCCGTGCTCGATGGGGCGAAGGCCAGCGTGAAGGAAGCGCAGCGAGCCTTTGAGCGTACTAACCGTTTGTATGCCAC CAAAGTGCTGAGCCAAGCGGATTTAGATACCGCCCGTGCGGCGCGGGATACCAGTTTAGCCAAGCAAGCCGAGGCCGAGC AAAGCCTGCGCCTACTAGAAAATGGCACCCGAAGTGAACAGCTCGAACAAGCTAAAGCCGCGGTGGCCGCCGCCAGCGCC AGTGTCGCCATCGAACAAAAAGCCTTAGCCGACTTGAGCTTAGTGGCGGCGCGTGACGCCGTTGTCGATACCCTACCTTG GCGAGTCGGCGATCGCATTGCTGCGGGTACTCAGTTGATTGGTTTGTTGGCGAGTGAGGATCCCTATGTGCGGGTTTATC TGCCCGCGACTTGGTTAGACAGAGTGAAGGCCGGTGATAAGGTCAATATTCGAGTGGATGGCCGCGAAATGCCGATTGCT GGCACAGTGCGCAATATCCGCAGTCAACCCGCTTACACGCCGTTTTATGCGCTTAATGAACGTGATCGAGCGCGGCTGAT GTATCTGACTGATATCACCATTTCCGCCGCGGGTCAGGATTTGCCGACGGGTATGGCATTAGCTGTGGAGTTGCCATGA
Upstream 100 bases:
>100_bases TCGGCTTTTTTGATGCCGATGCTGCGCTTTTGCAGCGCTTAGCTCTGCACAATATGCAGGTTTTTACGCAGGGACTGTTA TGTGAACCAAGGAGCCAGTC
Downstream 100 bases:
>100_bases GCCACGCCGATTTTGCTATCGAGACCCAAGGCATGACCCGCGCCTTTGGCGGCGTCAATGCGGTGGAAAACCTCGACCTC GCCATTCCCAAGGGAACCAT
Product: secretion protein HlyD family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 372; Mature: 371
Protein sequence:
>372_residues MSSTKGLTMLNDQDFSRNRFSKSNSSNNRLSSSKLSDSKLSNSKLRNNKLTNQTALAKRVATGVVLGCLLLQLAACTQES PSVLGTVERDRLTLTAPVGELITQVNVVEGQQVKAGEVLLTLDSTSANARLALRQAELEQAKAKLSEAVTGARLEDIERA KAVLDGAKASVKEAQRAFERTNRLYATKVLSQADLDTARAARDTSLAKQAEAEQSLRLLENGTRSEQLEQAKAAVAAASA SVAIEQKALADLSLVAARDAVVDTLPWRVGDRIAAGTQLIGLLASEDPYVRVYLPATWLDRVKAGDKVNIRVDGREMPIA GTVRNIRSQPAYTPFYALNERDRARLMYLTDITISAAGQDLPTGMALAVELP
Sequences:
>Translated_372_residues MSSTKGLTMLNDQDFSRNRFSKSNSSNNRLSSSKLSDSKLSNSKLRNNKLTNQTALAKRVATGVVLGCLLLQLAACTQES PSVLGTVERDRLTLTAPVGELITQVNVVEGQQVKAGEVLLTLDSTSANARLALRQAELEQAKAKLSEAVTGARLEDIERA KAVLDGAKASVKEAQRAFERTNRLYATKVLSQADLDTARAARDTSLAKQAEAEQSLRLLENGTRSEQLEQAKAAVAAASA SVAIEQKALADLSLVAARDAVVDTLPWRVGDRIAAGTQLIGLLASEDPYVRVYLPATWLDRVKAGDKVNIRVDGREMPIA GTVRNIRSQPAYTPFYALNERDRARLMYLTDITISAAGQDLPTGMALAVELP >Mature_371_residues SSTKGLTMLNDQDFSRNRFSKSNSSNNRLSSSKLSDSKLSNSKLRNNKLTNQTALAKRVATGVVLGCLLLQLAACTQESP SVLGTVERDRLTLTAPVGELITQVNVVEGQQVKAGEVLLTLDSTSANARLALRQAELEQAKAKLSEAVTGARLEDIERAK AVLDGAKASVKEAQRAFERTNRLYATKVLSQADLDTARAARDTSLAKQAEAEQSLRLLENGTRSEQLEQAKAAVAAASAS VAIEQKALADLSLVAARDAVVDTLPWRVGDRIAAGTQLIGLLASEDPYVRVYLPATWLDRVKAGDKVNIRVDGREMPIAG TVRNIRSQPAYTPFYALNERDRARLMYLTDITISAAGQDLPTGMALAVELP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0194 family [H]
Homologues:
Organism=Escherichia coli, GI1787013, Length=291, Percent_Identity=28.5223367697594, Blast_Score=91, Evalue=1e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006143 - InterPro: IPR022936 [H]
Pfam domain/function: PF00529 HlyD [H]
EC number: NA
Molecular weight: Translated: 40060; Mature: 39929
Theoretical pI: Translated: 9.71; Mature: 9.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSTKGLTMLNDQDFSRNRFSKSNSSNNRLSSSKLSDSKLSNSKLRNNKLTNQTALAKRV CCCCCCCEEECCCCCCHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHCCCCCHHHHHHHHH ATGVVLGCLLLQLAACTQESPSVLGTVERDRLTLTAPVGELITQVNVVEGQQVKAGEVLL HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEECCHHHHHHHHHHCCCCCEECCEEEE TLDSTSANARLALRQAELEQAKAKLSEAVTGARLEDIERAKAVLDGAKASVKEAQRAFER EEECCCCCCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH TNRLYATKVLSQADLDTARAARDTSLAKQAEAEQSLRLLENGTRSEQLEQAKAAVAAASA HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH SVAIEQKALADLSLVAARDAVVDTLPWRVGDRIAAGTQLIGLLASEDPYVRVYLPATWLD HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCEEEEEECHHHHH RVKAGDKVNIRVDGREMPIAGTVRNIRSQPAYTPFYALNERDRARLMYLTDITISAAGQD HHCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEEEEEEECCCCC LPTGMALAVELP CCCCEEEEEECC >Mature Secondary Structure SSTKGLTMLNDQDFSRNRFSKSNSSNNRLSSSKLSDSKLSNSKLRNNKLTNQTALAKRV CCCCCCEEECCCCCCHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHCCCCCHHHHHHHHH ATGVVLGCLLLQLAACTQESPSVLGTVERDRLTLTAPVGELITQVNVVEGQQVKAGEVLL HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEECCHHHHHHHHHHCCCCCEECCEEEE TLDSTSANARLALRQAELEQAKAKLSEAVTGARLEDIERAKAVLDGAKASVKEAQRAFER EEECCCCCCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH TNRLYATKVLSQADLDTARAARDTSLAKQAEAEQSLRLLENGTRSEQLEQAKAAVAAASA HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH SVAIEQKALADLSLVAARDAVVDTLPWRVGDRIAAGTQLIGLLASEDPYVRVYLPATWLD HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCEEEEEECHHHHH RVKAGDKVNIRVDGREMPIAGTVRNIRSQPAYTPFYALNERDRARLMYLTDITISAAGQD HHCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEEEEEEECCCCC LPTGMALAVELP CCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA