| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is mmsB [H]
Identifier: 160874647
GI number: 160874647
Start: 1843052
End: 1843954
Strand: Direct
Name: mmsB [H]
Synonym: Sbal195_1530
Alternate gene names: 160874647
Gene position: 1843052-1843954 (Clockwise)
Preceding gene: 160874646
Following gene: 160874648
Centisome position: 34.47
GC content: 50.61
Gene sequence:
>903_bases ATGAGTACAGTAGCATTTATCGGTTTAGGCAATATGGGCGGCCCAATGGCGGCCAATTTATTAAAAGCGGGCATGACGGT TCGTGTATTTGATTTAGTCCCTGAAGCCATGCACAGCCTTGCCGAGCAAGGGGCTTTTGTTTCTAGCACGGCCTGCGGCG CGGCGGCGGGTGCCAATGTGGTGATCACTATGCTGCCTGCGGGCAAGCATGTGAAAAGTTTATATTTAGGCAATGGCACA GACAAAGGACTGCTCGAAGTGGTTGCGGGTGATACCTTACTGATCGATTGCTCGACTATCGATGCGCAAAGCGCGCAATT GGTGGCGGCCGAAGCGGCTAAAAGCGGCATAGAGTTTATGGATGCACCGGTTTCTGGCGGCACAGCAGGCGCGGCGGCGG GCACTTTAACCTTTATTTGTGGTGGTTCCGATAGCGCTTTTGAGCGTGGTCAGCCAGTGCTGAAAGCTATGGGGGTGAAC ATATTCCATGCTGGTGGCCCAGGTGCGGGACAAGTCGCTAAAATCTGCAATAACATGCTGTTATCTGTGTTGATGGTCGG CACTTCTGAGGCGTTGCAAATGGGCATTGACCATGGTCTCGATCCTAAAGTCTTGTCCGACATTATGAAGGTTAGCAGTG GTGGTAACTGGACCCTCGAAAAGTATAATCCATGCCCAGGTGTGATGGAGACTGTACCTTCTTCTAAGGGCTATCAGGGC GGCTTTATGGTAGATTTGATGGTTAAAGATCTCGGTCTGTCCCAAGAAGCCGCATTATTGAGCAACTCCAGCACGCCAAT GGGCGCTTTAGCCCGCAGCTTGTATGTGAATCATGCAAGACAAGGCAACGGCCGCCGAGATTTTTCCAGTATTTTTGAAC AATTTGCACAACTTAAAAAATAG
Upstream 100 bases:
>100_bases GGCTCAGCCAAGCTCGCTTTATTCTGTGATAACGACAGCATAATCAATGGACTAGCAGTATCACTACACTAAAAAAAGAA CAGCACACAGGAGTGACAGC
Downstream 100 bases:
>100_bases ACATAGTTAACAAGGGATAACCAGATGGATTTAAAAGATAAGGTTGTCGTCATTACTGGCGGCGCGGGTGGCTTAGGTCT AGCAATGGCGCAAAATTTTG
Product: 3-hydroxyisobutyrate dehydrogenase
Products: NA
Alternate protein names: HIBADH [H]
Number of amino acids: Translated: 300; Mature: 299
Protein sequence:
>300_residues MSTVAFIGLGNMGGPMAANLLKAGMTVRVFDLVPEAMHSLAEQGAFVSSTACGAAAGANVVITMLPAGKHVKSLYLGNGT DKGLLEVVAGDTLLIDCSTIDAQSAQLVAAEAAKSGIEFMDAPVSGGTAGAAAGTLTFICGGSDSAFERGQPVLKAMGVN IFHAGGPGAGQVAKICNNMLLSVLMVGTSEALQMGIDHGLDPKVLSDIMKVSSGGNWTLEKYNPCPGVMETVPSSKGYQG GFMVDLMVKDLGLSQEAALLSNSSTPMGALARSLYVNHARQGNGRRDFSSIFEQFAQLKK
Sequences:
>Translated_300_residues MSTVAFIGLGNMGGPMAANLLKAGMTVRVFDLVPEAMHSLAEQGAFVSSTACGAAAGANVVITMLPAGKHVKSLYLGNGT DKGLLEVVAGDTLLIDCSTIDAQSAQLVAAEAAKSGIEFMDAPVSGGTAGAAAGTLTFICGGSDSAFERGQPVLKAMGVN IFHAGGPGAGQVAKICNNMLLSVLMVGTSEALQMGIDHGLDPKVLSDIMKVSSGGNWTLEKYNPCPGVMETVPSSKGYQG GFMVDLMVKDLGLSQEAALLSNSSTPMGALARSLYVNHARQGNGRRDFSSIFEQFAQLKK >Mature_299_residues STVAFIGLGNMGGPMAANLLKAGMTVRVFDLVPEAMHSLAEQGAFVSSTACGAAAGANVVITMLPAGKHVKSLYLGNGTD KGLLEVVAGDTLLIDCSTIDAQSAQLVAAEAAKSGIEFMDAPVSGGTAGAAAGTLTFICGGSDSAFERGQPVLKAMGVNI FHAGGPGAGQVAKICNNMLLSVLMVGTSEALQMGIDHGLDPKVLSDIMKVSSGGNWTLEKYNPCPGVMETVPSSKGYQGG FMVDLMVKDLGLSQEAALLSNSSTPMGALARSLYVNHARQGNGRRDFSSIFEQFAQLKK
Specific function: Unknown
COG id: COG2084
COG function: function code I; 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 3-hydroxyisobutyrate dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI23308751, Length=292, Percent_Identity=45.8904109589041, Blast_Score=257, Evalue=9e-69, Organism=Homo sapiens, GI40556376, Length=292, Percent_Identity=25, Blast_Score=88, Evalue=1e-17, Organism=Escherichia coli, GI1790315, Length=295, Percent_Identity=36.9491525423729, Blast_Score=165, Evalue=3e-42, Organism=Escherichia coli, GI145693186, Length=299, Percent_Identity=33.1103678929766, Blast_Score=152, Evalue=2e-38, Organism=Escherichia coli, GI1786719, Length=289, Percent_Identity=30.7958477508651, Blast_Score=118, Evalue=4e-28, Organism=Escherichia coli, GI1789092, Length=295, Percent_Identity=30.5084745762712, Blast_Score=111, Evalue=5e-26, Organism=Caenorhabditis elegans, GI17557316, Length=302, Percent_Identity=44.0397350993377, Blast_Score=232, Evalue=2e-61, Organism=Drosophila melanogaster, GI24655230, Length=297, Percent_Identity=40.7407407407407, Blast_Score=226, Evalue=2e-59, Organism=Drosophila melanogaster, GI19922568, Length=297, Percent_Identity=40.7407407407407, Blast_Score=226, Evalue=2e-59, Organism=Drosophila melanogaster, GI28574115, Length=300, Percent_Identity=24.3333333333333, Blast_Score=75, Evalue=4e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002204 - InterPro: IPR015815 - InterPro: IPR008927 - InterPro: IPR006115 - InterPro: IPR013328 - InterPro: IPR011548 - InterPro: IPR016040 [H]
Pfam domain/function: PF03446 NAD_binding_2 [H]
EC number: =1.1.1.31 [H]
Molecular weight: Translated: 30738; Mature: 30607
Theoretical pI: Translated: 6.01; Mature: 6.01
Prosite motif: PS00895 3_HYDROXYISOBUT_DH
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 5.3 %Met (Translated Protein) 7.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 5.0 %Met (Mature Protein) 6.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTVAFIGLGNMGGPMAANLLKAGMTVRVFDLVPEAMHSLAEQGAFVSSTACGAAAGANV CCEEEEEEECCCCCHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCE VITMLPAGKHVKSLYLGNGTDKGLLEVVAGDTLLIDCSTIDAQSAQLVAAEAAKSGIEFM EEEEECCCCCHHEEEECCCCCHHHHHEECCCEEEEEECCCCCCCHHHHHHHHHHCCCCEE DAPVSGGTAGAAAGTLTFICGGSDSAFERGQPVLKAMGVNIFHAGGPGAGQVAKICNNML ECCCCCCCCCCCCCEEEEEECCCCCHHHCCCHHHHHHCCEEEECCCCCHHHHHHHHHHHH LSVLMVGTSEALQMGIDHGLDPKVLSDIMKVSSGGNWTLEKYNPCPGVMETVPSSKGYQG HHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHCCCCCCCCC GFMVDLMVKDLGLSQEAALLSNSSTPMGALARSLYVNHARQGNGRRDFSSIFEQFAQLKK CEEEEEHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure STVAFIGLGNMGGPMAANLLKAGMTVRVFDLVPEAMHSLAEQGAFVSSTACGAAAGANV CEEEEEEECCCCCHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCE VITMLPAGKHVKSLYLGNGTDKGLLEVVAGDTLLIDCSTIDAQSAQLVAAEAAKSGIEFM EEEEECCCCCHHEEEECCCCCHHHHHEECCCEEEEEECCCCCCCHHHHHHHHHHCCCCEE DAPVSGGTAGAAAGTLTFICGGSDSAFERGQPVLKAMGVNIFHAGGPGAGQVAKICNNML ECCCCCCCCCCCCCEEEEEECCCCCHHHCCCHHHHHHCCEEEECCCCCHHHHHHHHHHHH LSVLMVGTSEALQMGIDHGLDPKVLSDIMKVSSGGNWTLEKYNPCPGVMETVPSSKGYQG HHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHCCCCCCCCC GFMVDLMVKDLGLSQEAALLSNSSTPMGALARSLYVNHARQGNGRRDFSSIFEQFAQLKK CEEEEEHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1339433; 10984043 [H]