| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is yngF [H]
Identifier: 160874646
GI number: 160874646
Start: 1841694
End: 1842845
Strand: Direct
Name: yngF [H]
Synonym: Sbal195_1529
Alternate gene names: 160874646
Gene position: 1841694-1842845 (Clockwise)
Preceding gene: 160874645
Following gene: 160874647
Centisome position: 34.44
GC content: 49.74
Gene sequence:
>1152_bases ATGACTAATGTAGTAGATAACGTAAATCAGGCCACGACCACGCAAAACGTGGTTTTTCAAACCTTAGCCACCGCGTCCGG TAAGTTGATTGGGGTGGTGACACTCAATGTGGAAAAAGCCCTCAACGCCTTAGATTTAGACATGGTGCGCGCTATGACGG CGCAGCTCAATCTATGGAAGAAAGACTCGCTTATCGCTTGTATCGTGTTAGATGGCAGTGGTGAGAAGGCATTTTGTGCG GGTGGTGATGTGCGTGCTTTATACCATGCATCCATTGCAGCGAAGGGACAAGTGACTGAGGAGGCGAAGGTTTTCTTCGA AGAGGAATATCGTCTCGATTATCTACTGCATACCTTTGGCAAACCTGTGTTGGTTTGGGGCGACGGCATTGTGATGGGCG GCGGGCTCGGTTTGATGGCGGGCGCAAGCCACAGAGTCGTTACCGAAACTTCGCGCATTGCTATGCCTGAAGTGACGATT GGCCTGTATCCCGATGTGGGCGGAAGCTATTTCCTTAATCGCATGCAGGGCAAAATGGGACTGTTTTTAGGGCTCACGGC CTATCAACTCAATGCCGCCGATGCCTGTTATGTGGGCCTTGCCGATCATTACCTGAACCGTGACGACAAAGAACTGATGT TCGATGCCATGGCCACCTTAGATTGGAGCGATACACCAGCGCTTAACCATCAGCGCTTAGATAGCATGATCAACGAGTTA TCTAATCAAGTGGATATCCCTAAGGGCGAAAGTGTATTGGCGGACAGCCAAGATAATATCGACCGACTGATGGCGGGTAG CTTGGAGGATATCGTTACGCGTATGTCGACGTTAGCGTCGGAGGATGCTTGGTTAATGAAGGCGCGCGATACCTTCCTGG CGGGCAGTCCTATCAGCTGGCATCTGGTTAATATCCAATCACAACTTGGTACTAAGTTAAGCTTAGCTGAATGTTTTAAA TGGGAATTAACCGCCAGTGTTAACGTGTGTGCCCATGGTGATTTCTGTGAAGGGGTTCGCGCACTCTTGATTGATAAAGA CAGACAACCCCAGTGGCGCTTTAAGGATGTTAACTCAGTACCTACCGCTGTACTTGAGCAAATATTGACTTCCCCTTGGG GCGAGGCGCATCCCTTTAGCCAACTGAGCTAA
Upstream 100 bases:
>100_bases TTGAGCGTGAATTATTTGTCGGGTTATTTGATACCGAAGATCAGGCCGAAGGCGTGAATGCGTTTTTGGGCAAACGTAAA GCTGATTGGAAGAACCGCTA
Downstream 100 bases:
>100_bases GCGTTGAGTTGATTATGCATAGACTTGGCTAGCGTTGAGTTGATTATGCATAGACTTGGCTAGCGTTGAGTTGATTAACG CAGACTTGAATAGTGCAGAG
Product: enoyl-CoA hydratase/isomerase
Products: trans-2-enoyl-CoA; trans-3-enoyl-CoA; H2O
Alternate protein names: NA
Number of amino acids: Translated: 383; Mature: 382
Protein sequence:
>383_residues MTNVVDNVNQATTTQNVVFQTLATASGKLIGVVTLNVEKALNALDLDMVRAMTAQLNLWKKDSLIACIVLDGSGEKAFCA GGDVRALYHASIAAKGQVTEEAKVFFEEEYRLDYLLHTFGKPVLVWGDGIVMGGGLGLMAGASHRVVTETSRIAMPEVTI GLYPDVGGSYFLNRMQGKMGLFLGLTAYQLNAADACYVGLADHYLNRDDKELMFDAMATLDWSDTPALNHQRLDSMINEL SNQVDIPKGESVLADSQDNIDRLMAGSLEDIVTRMSTLASEDAWLMKARDTFLAGSPISWHLVNIQSQLGTKLSLAECFK WELTASVNVCAHGDFCEGVRALLIDKDRQPQWRFKDVNSVPTAVLEQILTSPWGEAHPFSQLS
Sequences:
>Translated_383_residues MTNVVDNVNQATTTQNVVFQTLATASGKLIGVVTLNVEKALNALDLDMVRAMTAQLNLWKKDSLIACIVLDGSGEKAFCA GGDVRALYHASIAAKGQVTEEAKVFFEEEYRLDYLLHTFGKPVLVWGDGIVMGGGLGLMAGASHRVVTETSRIAMPEVTI GLYPDVGGSYFLNRMQGKMGLFLGLTAYQLNAADACYVGLADHYLNRDDKELMFDAMATLDWSDTPALNHQRLDSMINEL SNQVDIPKGESVLADSQDNIDRLMAGSLEDIVTRMSTLASEDAWLMKARDTFLAGSPISWHLVNIQSQLGTKLSLAECFK WELTASVNVCAHGDFCEGVRALLIDKDRQPQWRFKDVNSVPTAVLEQILTSPWGEAHPFSQLS >Mature_382_residues TNVVDNVNQATTTQNVVFQTLATASGKLIGVVTLNVEKALNALDLDMVRAMTAQLNLWKKDSLIACIVLDGSGEKAFCAG GDVRALYHASIAAKGQVTEEAKVFFEEEYRLDYLLHTFGKPVLVWGDGIVMGGGLGLMAGASHRVVTETSRIAMPEVTIG LYPDVGGSYFLNRMQGKMGLFLGLTAYQLNAADACYVGLADHYLNRDDKELMFDAMATLDWSDTPALNHQRLDSMINELS NQVDIPKGESVLADSQDNIDRLMAGSLEDIVTRMSTLASEDAWLMKARDTFLAGSPISWHLVNIQSQLGTKLSLAECFKW ELTASVNVCAHGDFCEGVRALLIDKDRQPQWRFKDVNSVPTAVLEQILTSPWGEAHPFSQLS
Specific function: Unknown
COG id: COG1024
COG function: function code I; Enoyl-CoA hydratase/carnithine racemase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the enoyl-CoA hydratase/isomerase family [H]
Homologues:
Organism=Homo sapiens, GI37594471, Length=333, Percent_Identity=37.5375375375375, Blast_Score=202, Evalue=3e-52, Organism=Homo sapiens, GI37594469, Length=298, Percent_Identity=35.9060402684564, Blast_Score=171, Evalue=1e-42, Organism=Homo sapiens, GI194097323, Length=177, Percent_Identity=31.0734463276836, Blast_Score=77, Evalue=4e-14, Organism=Caenorhabditis elegans, GI25144160, Length=341, Percent_Identity=38.7096774193548, Blast_Score=218, Evalue=4e-57, Organism=Caenorhabditis elegans, GI25144157, Length=365, Percent_Identity=37.2602739726027, Blast_Score=218, Evalue=4e-57, Organism=Caenorhabditis elegans, GI25145438, Length=183, Percent_Identity=30.6010928961749, Blast_Score=66, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6320241, Length=355, Percent_Identity=31.2676056338028, Blast_Score=154, Evalue=2e-38, Organism=Drosophila melanogaster, GI28571730, Length=333, Percent_Identity=40.5405405405405, Blast_Score=227, Evalue=8e-60, Organism=Drosophila melanogaster, GI28571729, Length=333, Percent_Identity=40.5405405405405, Blast_Score=227, Evalue=9e-60, Organism=Drosophila melanogaster, GI20129971, Length=197, Percent_Identity=28.4263959390863, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24653477, Length=197, Percent_Identity=28.4263959390863, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24653139, Length=183, Percent_Identity=27.8688524590164, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014748 - InterPro: IPR001753 - InterPro: IPR018376 [H]
Pfam domain/function: PF00378 ECH [H]
EC number: 4.2.1.17
Molecular weight: Translated: 41900; Mature: 41769
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNVVDNVNQATTTQNVVFQTLATASGKLIGVVTLNVEKALNALDLDMVRAMTAQLNLWK CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHCCEE KDSLIACIVLDGSGEKAFCAGGDVRALYHASIAAKGQVTEEAKVFFEEEYRLDYLLHTFG CCCEEEEEEEECCCCEEEECCCCEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC KPVLVWGDGIVMGGGLGLMAGASHRVVTETSRIAMPEVTIGLYPDVGGSYFLNRMQGKMG CEEEEECCCEEEECCCHHHCCCCCEEEECCCCEECCEEEEEECCCCCHHHHHHHHCCCCE LFLGLTAYQLNAADACYVGLADHYLNRDDKELMFDAMATLDWSDTPALNHQRLDSMINEL EEEEEEEEEECCCCEEEEEHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH SNQVDIPKGESVLADSQDNIDRLMAGSLEDIVTRMSTLASEDAWLMKARDTFLAGSPISW HHCCCCCCCCCEECCCCCCHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCEECCCCCEE HLVNIQSQLGTKLSLAECFKWELTASVNVCAHGDFCEGVRALLIDKDRQPQWRFKDVNSV EEEEEHHHCCCCCCHHHHHEEEEEEEEEEEECCCHHHHHHHHEECCCCCCCCCCCCCCCC PTAVLEQILTSPWGEAHPFSQLS HHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure TNVVDNVNQATTTQNVVFQTLATASGKLIGVVTLNVEKALNALDLDMVRAMTAQLNLWK CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHCCEE KDSLIACIVLDGSGEKAFCAGGDVRALYHASIAAKGQVTEEAKVFFEEEYRLDYLLHTFG CCCEEEEEEEECCCCEEEECCCCEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC KPVLVWGDGIVMGGGLGLMAGASHRVVTETSRIAMPEVTIGLYPDVGGSYFLNRMQGKMG CEEEEECCCEEEECCCHHHCCCCCEEEECCCCEECCEEEEEECCCCCHHHHHHHHCCCCE LFLGLTAYQLNAADACYVGLADHYLNRDDKELMFDAMATLDWSDTPALNHQRLDSMINEL EEEEEEEEEECCCCEEEEEHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH SNQVDIPKGESVLADSQDNIDRLMAGSLEDIVTRMSTLASEDAWLMKARDTFLAGSPISW HHCCCCCCCCCEECCCCCCHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCEECCCCCEE HLVNIQSQLGTKLSLAECFKWELTASVNVCAHGDFCEGVRALLIDKDRQPQWRFKDVNSV EEEEEHHHCCCCCCHHHHHEEEEEEEEEEEECCCHHHHHHHHEECCCCCCCCCCCCCCCC PTAVLEQILTSPWGEAHPFSQLS HHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: (3S)-3-hydroxyacyl-CoA
Specific reaction: (3S)-3-hydroxyacyl-CoA = trans-2(or 3)-enoyl-CoA + H2O
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9387222; 9384377 [H]