| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is yqcC [C]
Identifier: 160874588
GI number: 160874588
Start: 1772088
End: 1772438
Strand: Direct
Name: yqcC [C]
Synonym: Sbal195_1471
Alternate gene names: 160874588
Gene position: 1772088-1772438 (Clockwise)
Preceding gene: 160874585
Following gene: 160874589
Centisome position: 33.14
GC content: 47.58
Gene sequence:
>351_bases ATGGCTAACATGAGAATGGATCTGAAAGCTATGTTATACAGTCAAACCCAAGCTAAATTGGCTCAGATTGCCCAAGCGCT AAAAGCAGCCGAGTTGTGGTCTGAGCAGGCGCCTTCTACCGAGGCAATGGCAAGCACAGCGCCTTTTGCCTGTGATCTTA TGCCCCTTGAGCAGTGGTTGCAGTTTATTTTACTGCCTAGAATGCAGACTTTAATCGAAACGGGTGCGCCATTGCCGACG CAAATTGCGATAGCCCCTATGGCTGAACATGTTTGGCAGGATATGCCCCCGCGCCAAGCTCTGATTGGCGTATTGAATGA ATTGGATATGTTGTTAAATGAATCAAGATGA
Upstream 100 bases:
>100_bases AATTGGCGCCATTATAGGGGGAAGTGCGTCTGGATGGTATGATTGCGGCACTTTAATCGACCTATTCGGCCTGTGGATTG TGGCAAGTTCCTCAATCACA
Downstream 100 bases:
>100_bases TATCTGGCTTGAAACGCCTGAAAATGCACTGAATGCATCCCAAGAGGATGACTCAGAAGAGCAGGCGCCTGAGATTGAAA TTCTTTATGAAGATGAGCAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 116; Mature: 115
Protein sequence:
>116_residues MANMRMDLKAMLYSQTQAKLAQIAQALKAAELWSEQAPSTEAMASTAPFACDLMPLEQWLQFILLPRMQTLIETGAPLPT QIAIAPMAEHVWQDMPPRQALIGVLNELDMLLNESR
Sequences:
>Translated_116_residues MANMRMDLKAMLYSQTQAKLAQIAQALKAAELWSEQAPSTEAMASTAPFACDLMPLEQWLQFILLPRMQTLIETGAPLPT QIAIAPMAEHVWQDMPPRQALIGVLNELDMLLNESR >Mature_115_residues ANMRMDLKAMLYSQTQAKLAQIAQALKAAELWSEQAPSTEAMASTAPFACDLMPLEQWLQFILLPRMQTLIETGAPLPTQ IAIAPMAEHVWQDMPPRQALIGVLNELDMLLNESR
Specific function: Unknown
COG id: COG3098
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli yqcC [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007384 [H]
Pfam domain/function: PF04287 DUF446 [H]
EC number: NA
Molecular weight: Translated: 12951; Mature: 12820
Theoretical pI: Translated: 4.36; Mature: 4.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 8.6 %Met (Translated Protein) 9.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 7.8 %Met (Mature Protein) 8.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANMRMDLKAMLYSQTQAKLAQIAQALKAAELWSEQAPSTEAMASTAPFACDLMPLEQWL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHH QFILLPRMQTLIETGAPLPTQIAIAPMAEHVWQDMPPRQALIGVLNELDMLLNESR HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure ANMRMDLKAMLYSQTQAKLAQIAQALKAAELWSEQAPSTEAMASTAPFACDLMPLEQWL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHH QFILLPRMQTLIETGAPLPTQIAIAPMAEHVWQDMPPRQALIGVLNELDMLLNESR HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]