| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is ycbZ [H]
Identifier: 160874447
GI number: 160874447
Start: 1577847
End: 1580264
Strand: Reverse
Name: ycbZ [H]
Synonym: Sbal195_1328
Alternate gene names: 160874447
Gene position: 1580264-1577847 (Counterclockwise)
Preceding gene: 160874453
Following gene: 160874445
Centisome position: 29.55
GC content: 48.92
Gene sequence:
>2418_bases ATGCCCACTGACGTCGTATCAAGCCAAGCCACCCTACTCGACAGTAAACAACTGTATCGCATTTGCGAACTCGACCAATT AAGCACAGATTGCCAGTCCACAGCCGAGCTCACCCCACTTGATGATATTGTCGGCCAAGAACGTGCCCAGCAAGCGGTAG AGTTTGCGATGGGGATTAAAGAAAAGGGCTATAACATTTATGCCATCGGCCAGAACGGCCTTGGCAAACGCACTATGATG CTGCGCTATTTAAGCCGTCACGAGCCAAGCGATCATACGCTGTACGACTGGTGTTACGTGGTTAATTTCGATGATACCCG TTGCCCTAAAGTGCTCAAACTGAGCGCGGGTACTGGGCTCGAATTTAAAAAAGCCGTCGAAAAATTAATGCTAAAACTTG TCAAAGCTTTGCCTTTAGCCTTTGATAATGAAATGTATTATGCCCGCACAGAAAAGCTCAAAAGCCAGCTATCACAGAAA CAAGAAGTCGCACTCACAGAATTAACCGAAGAAGCAAAACAAAAAGGCATCAGCCTCAGCTTGACTATGCAGGGCGACTA TCAAATGTTAGCCCTCAATGGTGAAGAGCCCCACGACGAAGCCTCATTCGAAGCCTTGACCGATGCTGAGCGCAGCCAAT TTGAAAGCAATATCAATGGCCTAGAAGTGAAGCTGCGCGGAATTATTCGCCAAATCACAGAATGGGAAGAAGAATTTAGC GACAAGCAGCAAGAGCATGACGAGCAAGTCGCCAAAGAAGTGTTAATCCATTTTATTAAGCCACTTAAAGATAAGTTCAA GCACCAGCCAGAAGCGCGCACTTTCTTAACCGGTATGCAGGCGGATATCTTAGATAATCTGGATATTTTCTTAGAAGAAA GCGAGGAACAATTGGGCCTAGCCTATGCTTCCCTAGAAAAGAAAATGCCCCGCCGCTACCAAGTTAACGTTTTGGTCGGC CAAGGCACTCAAAAATTCCCCATAGTCGTCGAAGAAAGCCCGAGTTATCACAGCCTATTTGGCTATGTGGAGAACGCCAC ATTTAGAGGCACAGTGTTCACCGACTTCTCGCTTATCCGGCCCGGCAGCCTGCACAAGGCGAATGGCGGCGTGTTATTGA TGGATGCCGTTAAAGTATTAGAGCGCCCTTACGTGTGGGACGGACTAAAGCGCGCCCTGCGTTCACGAAAACTGGATTTA AGCTCACTCGAACGGGAAGTGTCTCTATCGGGTACGATTTCCTTGGCGCCCGAGCCTATCCCCTTAGATGTGAAAATCAT CCTGTTTGGCGATCATGAAACCTATCAGCTGCTGCAGCACTATGATCCTGACTTTAGCGAGCTATTTCGCGTTACCGCCG ATTTTGAAGATGTGATGGACAGAACCGCCGCCTCTGAGGCGCACTATGCCCGCTTTATTTCGAGCATTGTCCACGACAAC AATATGCTGCACTGCGATCGCGCCGCCATAGCGCGCATCATTGAATACAGCTCGCGGGAAGCCGAAGATCAGCAAAAACT GTCGCTACACTCGGCCAATATTGCCAACCTGCTGCGGGAATCAAACTACTGCGCTAAATCGGCAGGCAGTCAGCAAATTT TAGTGCCGCACGTTGAGCAAGCACTGCGAAATCAAGAACAAAGAGTCTCGCGTCTGCACGATAACATAATGCAGAGCTTT ACCAACGGCACCACCTTGATCAGTACTCAGGGCAAAGTGGTTGGGCAAATCAATGCCTTATCCGTCATCTCGACCTCTGA TCATCAGTTTGGTATGCCCAATCGCATCACAGCAACCACTGCCTTTGGTAAAGGTGAAGTGATGGATATCGAACACAGAG TCAAACTAGGGGGGCGAATTCACTCTAAGGGCGTGTTGATCTTAACCGCTTATTTAGCCTCAGTGTTAGGTAAAACAGCG CAAATCCCGCTCACCACTTACCTCACCTTCGAGCAATCTTACAGCGGCGTGGACGGCGATAGCGCCTCAATGGCCGAATG TTGCGCCATTATCTCGGCCATTAGCGAGCAAGCACTAAGGCAAGATATTGCCATCACAGGTTCGATGAACCAGTTTGGTG AGGCTCAGCCCATTGGCGGTGTGAATGAGAAAATTGAAGGCTTCTTTGATGTCTGCAAAATTAAAGGCCGTACGTCAGAT CAAGGGGTGATTATTCCCGCTTCGAACATGGCTAACCTTATGCTACGTAAAGACATTGTCGAGGCAGTGGCGCAAGGTGA GTTCCACATTTGGGCCATTTCCCATGTGACTCAAGCCATGGAGTTGCTGCTTGGTAAAACCGCAGGCAGTTTGTCGCAAA CGGCCACGCCTAGCCAAGGGCAATATTCTCCCGAGAGCATTTTCGGCATTGCCCAGCAAAAGCTCACCGCACTTAGATCC TTAGTTAAAGCGGATTAA
Upstream 100 bases:
>100_bases CCCTAAAGGCATAAATCAGCAATAACAGAGTTTTGATTGACAAAAATGCTATCTTATTGTCTACAATGGAAATAATAAGG CTGAAAAACCAAGGATATTT
Downstream 100 bases:
>100_bases ATAAAAACGCGAGAAAGACAAACAAAAAGGGTTAGCCAATGCTAACCCTTTCTTTATTCAGCTATTAAGTGAAATTACAC TAAGCTTGCTAGCATTTCGT
Product: peptidase S16 lon domain-containing protein
Products: NA
Alternate protein names: ATP-dependent protease La homolog [H]
Number of amino acids: Translated: 805; Mature: 804
Protein sequence:
>805_residues MPTDVVSSQATLLDSKQLYRICELDQLSTDCQSTAELTPLDDIVGQERAQQAVEFAMGIKEKGYNIYAIGQNGLGKRTMM LRYLSRHEPSDHTLYDWCYVVNFDDTRCPKVLKLSAGTGLEFKKAVEKLMLKLVKALPLAFDNEMYYARTEKLKSQLSQK QEVALTELTEEAKQKGISLSLTMQGDYQMLALNGEEPHDEASFEALTDAERSQFESNINGLEVKLRGIIRQITEWEEEFS DKQQEHDEQVAKEVLIHFIKPLKDKFKHQPEARTFLTGMQADILDNLDIFLEESEEQLGLAYASLEKKMPRRYQVNVLVG QGTQKFPIVVEESPSYHSLFGYVENATFRGTVFTDFSLIRPGSLHKANGGVLLMDAVKVLERPYVWDGLKRALRSRKLDL SSLEREVSLSGTISLAPEPIPLDVKIILFGDHETYQLLQHYDPDFSELFRVTADFEDVMDRTAASEAHYARFISSIVHDN NMLHCDRAAIARIIEYSSREAEDQQKLSLHSANIANLLRESNYCAKSAGSQQILVPHVEQALRNQEQRVSRLHDNIMQSF TNGTTLISTQGKVVGQINALSVISTSDHQFGMPNRITATTAFGKGEVMDIEHRVKLGGRIHSKGVLILTAYLASVLGKTA QIPLTTYLTFEQSYSGVDGDSASMAECCAIISAISEQALRQDIAITGSMNQFGEAQPIGGVNEKIEGFFDVCKIKGRTSD QGVIIPASNMANLMLRKDIVEAVAQGEFHIWAISHVTQAMELLLGKTAGSLSQTATPSQGQYSPESIFGIAQQKLTALRS LVKAD
Sequences:
>Translated_805_residues MPTDVVSSQATLLDSKQLYRICELDQLSTDCQSTAELTPLDDIVGQERAQQAVEFAMGIKEKGYNIYAIGQNGLGKRTMM LRYLSRHEPSDHTLYDWCYVVNFDDTRCPKVLKLSAGTGLEFKKAVEKLMLKLVKALPLAFDNEMYYARTEKLKSQLSQK QEVALTELTEEAKQKGISLSLTMQGDYQMLALNGEEPHDEASFEALTDAERSQFESNINGLEVKLRGIIRQITEWEEEFS DKQQEHDEQVAKEVLIHFIKPLKDKFKHQPEARTFLTGMQADILDNLDIFLEESEEQLGLAYASLEKKMPRRYQVNVLVG QGTQKFPIVVEESPSYHSLFGYVENATFRGTVFTDFSLIRPGSLHKANGGVLLMDAVKVLERPYVWDGLKRALRSRKLDL SSLEREVSLSGTISLAPEPIPLDVKIILFGDHETYQLLQHYDPDFSELFRVTADFEDVMDRTAASEAHYARFISSIVHDN NMLHCDRAAIARIIEYSSREAEDQQKLSLHSANIANLLRESNYCAKSAGSQQILVPHVEQALRNQEQRVSRLHDNIMQSF TNGTTLISTQGKVVGQINALSVISTSDHQFGMPNRITATTAFGKGEVMDIEHRVKLGGRIHSKGVLILTAYLASVLGKTA QIPLTTYLTFEQSYSGVDGDSASMAECCAIISAISEQALRQDIAITGSMNQFGEAQPIGGVNEKIEGFFDVCKIKGRTSD QGVIIPASNMANLMLRKDIVEAVAQGEFHIWAISHVTQAMELLLGKTAGSLSQTATPSQGQYSPESIFGIAQQKLTALRS LVKAD >Mature_804_residues PTDVVSSQATLLDSKQLYRICELDQLSTDCQSTAELTPLDDIVGQERAQQAVEFAMGIKEKGYNIYAIGQNGLGKRTMML RYLSRHEPSDHTLYDWCYVVNFDDTRCPKVLKLSAGTGLEFKKAVEKLMLKLVKALPLAFDNEMYYARTEKLKSQLSQKQ EVALTELTEEAKQKGISLSLTMQGDYQMLALNGEEPHDEASFEALTDAERSQFESNINGLEVKLRGIIRQITEWEEEFSD KQQEHDEQVAKEVLIHFIKPLKDKFKHQPEARTFLTGMQADILDNLDIFLEESEEQLGLAYASLEKKMPRRYQVNVLVGQ GTQKFPIVVEESPSYHSLFGYVENATFRGTVFTDFSLIRPGSLHKANGGVLLMDAVKVLERPYVWDGLKRALRSRKLDLS SLEREVSLSGTISLAPEPIPLDVKIILFGDHETYQLLQHYDPDFSELFRVTADFEDVMDRTAASEAHYARFISSIVHDNN MLHCDRAAIARIIEYSSREAEDQQKLSLHSANIANLLRESNYCAKSAGSQQILVPHVEQALRNQEQRVSRLHDNIMQSFT NGTTLISTQGKVVGQINALSVISTSDHQFGMPNRITATTAFGKGEVMDIEHRVKLGGRIHSKGVLILTAYLASVLGKTAQ IPLTTYLTFEQSYSGVDGDSASMAECCAIISAISEQALRQDIAITGSMNQFGEAQPIGGVNEKIEGFFDVCKIKGRTSDQ GVIIPASNMANLMLRKDIVEAVAQGEFHIWAISHVTQAMELLLGKTAGSLSQTATPSQGQYSPESIFGIAQQKLTALRSL VKAD
Specific function: Unknown
COG id: COG1067
COG function: function code O; Predicted ATP-dependent protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S16 family [H]
Homologues:
Organism=Escherichia coli, GI1787188, Length=440, Percent_Identity=37.9545454545455, Blast_Score=285, Evalue=1e-77,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008269 - InterPro: IPR001984 - InterPro: IPR020568 [H]
Pfam domain/function: PF05362 Lon_C [H]
EC number: 3.4.21.- [C]
Molecular weight: Translated: 89731; Mature: 89600
Theoretical pI: Translated: 5.31; Mature: 5.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTDVVSSQATLLDSKQLYRICELDQLSTDCQSTAELTPLDDIVGQERAQQAVEFAMGIK CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH EKGYNIYAIGQNGLGKRTMMLRYLSRHEPSDHTLYDWCYVVNFDDTRCPKVLKLSAGTGL HCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCEEEECCCCCC EFKKAVEKLMLKLVKALPLAFDNEMYYARTEKLKSQLSQKQEVALTELTEEAKQKGISLS HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE LTMQGDYQMLALNGEEPHDEASFEALTDAERSQFESNINGLEVKLRGIIRQITEWEEEFS EEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH DKQQEHDEQVAKEVLIHFIKPLKDKFKHQPEARTFLTGMQADILDNLDIFLEESEEQLGL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCHHEEECCHHHHHH AYASLEKKMPRRYQVNVLVGQGTQKFPIVVEESPSYHSLFGYVENATFRGTVFTDFSLIR HHHHHHHHCCCEEEEEEEEECCCCCCCEEEECCCCHHHHHHHHHCCEEEEEEEECCEEEC PGSLHKANGGVLLMDAVKVLERPYVWDGLKRALRSRKLDLSSLEREVSLSGTISLAPEPI CCCCEECCCCEEHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCC PLDVKIILFGDHETYQLLQHYDPDFSELFRVTADFEDVMDRTAASEAHYARFISSIVHDN CCEEEEEEECCCHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC NMLHCDRAAIARIIEYSSREAEDQQKLSLHSANIANLLRESNYCAKSAGSQQILVPHVEQ CCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCEEHHHHHH ALRNQEQRVSRLHDNIMQSFTNGTTLISTQGKVVGQINALSVISTSDHQFGMPNRITATT HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEEEEEEECCCCCCCCCCCEEEEE AFGKGEVMDIEHRVKLGGRIHSKGVLILTAYLASVLGKTAQIPLTTYLTFEQSYSGVDGD ECCCCCEEEHHHHHHHCCEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCC SASMAECCAIISAISEQALRQDIAITGSMNQFGEAQPIGGVNEKIEGFFDVCKIKGRTSD CHHHHHHHHHHHHHHHHHHHHHHEEECCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCC QGVIIPASNMANLMLRKDIVEAVAQGEFHIWAISHVTQAMELLLGKTAGSLSQTATPSQG CCEEEECCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCC QYSPESIFGIAQQKLTALRSLVKAD CCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PTDVVSSQATLLDSKQLYRICELDQLSTDCQSTAELTPLDDIVGQERAQQAVEFAMGIK CCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH EKGYNIYAIGQNGLGKRTMMLRYLSRHEPSDHTLYDWCYVVNFDDTRCPKVLKLSAGTGL HCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCEEEECCCCCC EFKKAVEKLMLKLVKALPLAFDNEMYYARTEKLKSQLSQKQEVALTELTEEAKQKGISLS HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE LTMQGDYQMLALNGEEPHDEASFEALTDAERSQFESNINGLEVKLRGIIRQITEWEEEFS EEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH DKQQEHDEQVAKEVLIHFIKPLKDKFKHQPEARTFLTGMQADILDNLDIFLEESEEQLGL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHCCCHHEEECCHHHHHH AYASLEKKMPRRYQVNVLVGQGTQKFPIVVEESPSYHSLFGYVENATFRGTVFTDFSLIR HHHHHHHHCCCEEEEEEEEECCCCCCCEEEECCCCHHHHHHHHHCCEEEEEEEECCEEEC PGSLHKANGGVLLMDAVKVLERPYVWDGLKRALRSRKLDLSSLEREVSLSGTISLAPEPI CCCCEECCCCEEHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCC PLDVKIILFGDHETYQLLQHYDPDFSELFRVTADFEDVMDRTAASEAHYARFISSIVHDN CCEEEEEEECCCHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC NMLHCDRAAIARIIEYSSREAEDQQKLSLHSANIANLLRESNYCAKSAGSQQILVPHVEQ CCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCEEHHHHHH ALRNQEQRVSRLHDNIMQSFTNGTTLISTQGKVVGQINALSVISTSDHQFGMPNRITATT HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEEEEEEECCCCCCCCCCCEEEEE AFGKGEVMDIEHRVKLGGRIHSKGVLILTAYLASVLGKTAQIPLTTYLTFEQSYSGVDGD ECCCCCEEEHHHHHHHCCEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCC SASMAECCAIISAISEQALRQDIAITGSMNQFGEAQPIGGVNEKIEGFFDVCKIKGRTSD CHHHHHHHHHHHHHHHHHHHHHHEEECCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCC QGVIIPASNMANLMLRKDIVEAVAQGEFHIWAISHVTQAMELLLGKTAGSLSQTATPSQG CCEEEECCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCC QYSPESIFGIAQQKLTALRSLVKAD CCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]