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The map label for this gene is smpB

Identifier: 160874453

GI number: 160874453

Start: 1587615

End: 1588106

Strand: Reverse

Name: smpB

Synonym: Sbal195_1334

Alternate gene names: 160874453

Gene position: 1588106-1587615 (Counterclockwise)

Preceding gene: 160874456

Following gene: 160874447

Centisome position: 29.7

GC content: 46.75

Gene sequence:

>492_bases
ATGGTAAAGAAAAATTCAAGCAAAGCCGCGCCTGCGACTATCGCACGTAATAAGCGCGCAACCTTCGAATACCGTTTCGA
AGAGAAAATGGAAGCCGGCCTATCCCTAATGGGATGGGAAGTTAAATCTATCCGTATGGGTAAGGTCAACTTGTCCGACT
GTTACGTATTCCTGAAAAATGGCGAAGCCTTTATGCATGGCTGCACCATTATTCCCTTGAATACGGCATCGACACACGTT
GTCTGCGATCCCCTGCGCTTGAAAAAGCTGCTACTCAGCCGTAAAGAGCTCGATAAGCTGGCAGGCTTAGTCGAGCGTCA
AGGCTACTCCATCATTCCTATTTCTATGTACTGGCGTAAAGGTGCATGGGTGAAAGTGGAGATTGGCCTAGGTAAAGGTA
AGAAAGATCACGATAAGCGCGAAGATACTAAAGCGCGTGAATGGGAAGTTGAAAAAGCCCGCGTGATGAAAAAAGAAAAA
ACGCACGGATAA

Upstream 100 bases:

>100_bases
GTTCAAAAAACCAGCAACAACACGATAGAGGCTTGAAATTAACTAAATAAAACCTTATATCAATACCAAATTGAATCACC
GTGCGTATAATGGCGCCACT

Downstream 100 bases:

>100_bases
TGAACAAACGATTGAACTTGAAGCAAATGATGCTAGGTGATCATTGTGCTACGGGTTACAATCAAATTCTTGGGGGCGAT
TCTGGATTCGACAGGATTCA

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MVKKNSSKAAPATIARNKRATFEYRFEEKMEAGLSLMGWEVKSIRMGKVNLSDCYVFLKNGEAFMHGCTIIPLNTASTHV
VCDPLRLKKLLLSRKELDKLAGLVERQGYSIIPISMYWRKGAWVKVEIGLGKGKKDHDKREDTKAREWEVEKARVMKKEK
THG

Sequences:

>Translated_163_residues
MVKKNSSKAAPATIARNKRATFEYRFEEKMEAGLSLMGWEVKSIRMGKVNLSDCYVFLKNGEAFMHGCTIIPLNTASTHV
VCDPLRLKKLLLSRKELDKLAGLVERQGYSIIPISMYWRKGAWVKVEIGLGKGKKDHDKREDTKAREWEVEKARVMKKEK
THG
>Mature_163_residues
MVKKNSSKAAPATIARNKRATFEYRFEEKMEAGLSLMGWEVKSIRMGKVNLSDCYVFLKNGEAFMHGCTIIPLNTASTHV
VCDPLRLKKLLLSRKELDKLAGLVERQGYSIIPISMYWRKGAWVKVEIGLGKGKKDHDKREDTKAREWEVEKARVMKKEK
THG

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=157, Percent_Identity=60.5095541401274, Blast_Score=202, Evalue=7e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_SHEB2 (B8EAZ5)

Other databases:

- EMBL:   CP001252
- RefSeq:   YP_002358960.1
- ProteinModelPortal:   B8EAZ5
- SMR:   B8EAZ5
- GeneID:   7088961
- GenomeReviews:   CP001252_GR
- KEGG:   sbp:Sbal223_3052
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 18641; Mature: 18641

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKKNSSKAAPATIARNKRATFEYRFEEKMEAGLSLMGWEVKSIRMGKVNLSDCYVFLKN
CCCCCCCCCCCHHHHCCCCCEEEEEHHHHHHCCCEEECEEEEEEEECCEEHHHEEEEEEC
GEAFMHGCTIIPLNTASTHVVCDPLRLKKLLLSRKELDKLAGLVERQGYSIIPISMYWRK
CCEEEECCEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECC
GAWVKVEIGLGKGKKDHDKREDTKAREWEVEKARVMKKEKTHG
CCEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVKKNSSKAAPATIARNKRATFEYRFEEKMEAGLSLMGWEVKSIRMGKVNLSDCYVFLKN
CCCCCCCCCCCHHHHCCCCCEEEEEHHHHHHCCCEEECEEEEEEEECCEEHHHEEEEEEC
GEAFMHGCTIIPLNTASTHVVCDPLRLKKLLLSRKELDKLAGLVERQGYSIIPISMYWRK
CCEEEECCEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECC
GAWVKVEIGLGKGKKDHDKREDTKAREWEVEKARVMKKEKTHG
CCEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA