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The map label for this gene is galR [H]

Identifier: 160874333

GI number: 160874333

Start: 1444115

End: 1445119

Strand: Reverse

Name: galR [H]

Synonym: Sbal195_1214

Alternate gene names: 160874333

Gene position: 1445119-1444115 (Counterclockwise)

Preceding gene: 160874334

Following gene: 160874332

Centisome position: 27.03

GC content: 46.17

Gene sequence:

>1005_bases
ATGGCCACTATTTACGACGTTTCGGTACTTGCAGGCGTTTCACTTGCGACTGTGTCACGGGTGATGAATAAAAACACCAA
TGTCAGTGAGAAAACCAAACAAAAGGTATTAGACGCTATGGCTCAGTTGGACTATCGCCCCAATGCGATAGCCCAATCAT
TAGCGTCCAACTGCTCAAATAGTGTGGGCGTCCTGGTATCACAATTGGATGGGCCATTTTATGGACCTATGATGACTGAA
ATTGAAGATGCCCTGCGTGATGCGGGTAAACACGTCATTATTGCCGCGGGTAAAAGCAATGAATCTCTAGAAAAGGATGC
GGTGCAGTTTTTACTGGATCGCGGCTGTGATGCGTTGATTATCGACGTGGAAGCGGTTTCAGATGACTATCTTATCGATC
TCTGTAAGCGCAGCACGCCAATCGTACTGATTAACCGCTATGTTGCCGCCATACGTGAACGCTGTATTTATCTCGATAAC
GAGCTTGGCGGTTACCTCGCGACTCAGCATATGTTGTCGTTAGGGCATGAACATATTGCTTATATATCAGGACCTTTATT
CAAACTAGATGCTAGGCAGCGCCTGATGGGCCATAAAAAAGCGCTCACTGAATCGGCCATCCCCTATGAAAGCGAGCTGT
TCTACGAAGGGACATTTAAAGAGTCGAGCGGTTGCGATGGCATGCGACATTTACTCAGCCTGCAACGGCCGTTTACTGCG
GTGATTTGCGCCAATGACCAAATGGCATCGGGAGCGATTTCAACCTGCCTTGAACAAGGGCTTAATGTACCCGAAGATTT
GTCCTTCATGGGTTATGATAACATCCCGTTTCCCCAATATATTTCCCCTAAGCTCACCTCAGTCAGTAACCCCATCCATG
AAATGGGTAAAATGGCGGCGTTCTGGGTACTAAAACACGTTTACAATAAAACCGATGTGGAGATTGTTAGCCATTTTACG
CCTTCATTATTTGTAAGAGATTCAGCAGTTAAGCTAGAGAAATAG

Upstream 100 bases:

>100_bases
AAAGTGGATGAAATCCATCTGGAATTAAATAGAGCCACCTAATAAAATTATGCTAATCTTCAAGGCATTGTACTTTTCAG
TACCTCTAATTTGAGATGAT

Downstream 100 bases:

>100_bases
CGAATAAATGAAGGCTAGCACTGCTCTAGCCTGACCATGTTGAACTGCAAGAATGAGCACGGCATTGCGTTTTCTCGTTA
GATTTTACGTGCACAAGTGA

Product: LacI family transcription regulator

Products: NA

Alternate protein names: Galactose operon repressor [H]

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MATIYDVSVLAGVSLATVSRVMNKNTNVSEKTKQKVLDAMAQLDYRPNAIAQSLASNCSNSVGVLVSQLDGPFYGPMMTE
IEDALRDAGKHVIIAAGKSNESLEKDAVQFLLDRGCDALIIDVEAVSDDYLIDLCKRSTPIVLINRYVAAIRERCIYLDN
ELGGYLATQHMLSLGHEHIAYISGPLFKLDARQRLMGHKKALTESAIPYESELFYEGTFKESSGCDGMRHLLSLQRPFTA
VICANDQMASGAISTCLEQGLNVPEDLSFMGYDNIPFPQYISPKLTSVSNPIHEMGKMAAFWVLKHVYNKTDVEIVSHFT
PSLFVRDSAVKLEK

Sequences:

>Translated_334_residues
MATIYDVSVLAGVSLATVSRVMNKNTNVSEKTKQKVLDAMAQLDYRPNAIAQSLASNCSNSVGVLVSQLDGPFYGPMMTE
IEDALRDAGKHVIIAAGKSNESLEKDAVQFLLDRGCDALIIDVEAVSDDYLIDLCKRSTPIVLINRYVAAIRERCIYLDN
ELGGYLATQHMLSLGHEHIAYISGPLFKLDARQRLMGHKKALTESAIPYESELFYEGTFKESSGCDGMRHLLSLQRPFTA
VICANDQMASGAISTCLEQGLNVPEDLSFMGYDNIPFPQYISPKLTSVSNPIHEMGKMAAFWVLKHVYNKTDVEIVSHFT
PSLFVRDSAVKLEK
>Mature_333_residues
ATIYDVSVLAGVSLATVSRVMNKNTNVSEKTKQKVLDAMAQLDYRPNAIAQSLASNCSNSVGVLVSQLDGPFYGPMMTEI
EDALRDAGKHVIIAAGKSNESLEKDAVQFLLDRGCDALIIDVEAVSDDYLIDLCKRSTPIVLINRYVAAIRERCIYLDNE
LGGYLATQHMLSLGHEHIAYISGPLFKLDARQRLMGHKKALTESAIPYESELFYEGTFKESSGCDGMRHLLSLQRPFTAV
ICANDQMASGAISTCLEQGLNVPEDLSFMGYDNIPFPQYISPKLTSVSNPIHEMGKMAAFWVLKHVYNKTDVEIVSHFTP
SLFVRDSAVKLEK

Specific function: Repressor of the galactose operon. Binds galactose as an inducer [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789202, Length=328, Percent_Identity=39.0243902439024, Blast_Score=228, Evalue=4e-61,
Organism=Escherichia coli, GI1788474, Length=328, Percent_Identity=36.890243902439, Blast_Score=208, Evalue=4e-55,
Organism=Escherichia coli, GI1789068, Length=298, Percent_Identity=32.5503355704698, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1787948, Length=330, Percent_Identity=31.5151515151515, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI1790194, Length=331, Percent_Identity=31.7220543806647, Blast_Score=167, Evalue=8e-43,
Organism=Escherichia coli, GI1790369, Length=309, Percent_Identity=30.0970873786408, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1786540, Length=317, Percent_Identity=33.7539432176656, Blast_Score=138, Evalue=6e-34,
Organism=Escherichia coli, GI1787906, Length=310, Percent_Identity=28.0645161290323, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787580, Length=329, Percent_Identity=25.2279635258359, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI48994940, Length=311, Percent_Identity=25.4019292604502, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1790715, Length=310, Percent_Identity=24.8387096774194, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1789456, Length=335, Percent_Identity=24.7761194029851, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1790689, Length=312, Percent_Identity=22.7564102564103, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1786268, Length=275, Percent_Identity=22.5454545454545, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36854; Mature: 36723

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIYDVSVLAGVSLATVSRVMNKNTNVSEKTKQKVLDAMAQLDYRPNAIAQSLASNCSN
CCEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
SVGVLVSQLDGPFYGPMMTEIEDALRDAGKHVIIAAGKSNESLEKDAVQFLLDRGCDALI
CHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEE
IDVEAVSDDYLIDLCKRSTPIVLINRYVAAIRERCIYLDNELGGYLATQHMLSLGHEHIA
EEEECCCCHHHHHHHHCCCCEEEHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHCHHHHH
YISGPLFKLDARQRLMGHKKALTESAIPYESELFYEGTFKESSGCDGMRHLLSLQRPFTA
HHCCCCEEECHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCEE
VICANDQMASGAISTCLEQGLNVPEDLSFMGYDNIPFPQYISPKLTSVSNPIHEMGKMAA
EEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHH
FWVLKHVYNKTDVEIVSHFTPSLFVRDSAVKLEK
HHHHHHHHCCCHHHHHHHCCCCCEEECCCCCCCC
>Mature Secondary Structure 
ATIYDVSVLAGVSLATVSRVMNKNTNVSEKTKQKVLDAMAQLDYRPNAIAQSLASNCSN
CEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
SVGVLVSQLDGPFYGPMMTEIEDALRDAGKHVIIAAGKSNESLEKDAVQFLLDRGCDALI
CHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEE
IDVEAVSDDYLIDLCKRSTPIVLINRYVAAIRERCIYLDNELGGYLATQHMLSLGHEHIA
EEEECCCCHHHHHHHHCCCCEEEHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHCHHHHH
YISGPLFKLDARQRLMGHKKALTESAIPYESELFYEGTFKESSGCDGMRHLLSLQRPFTA
HHCCCCEEECHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCEE
VICANDQMASGAISTCLEQGLNVPEDLSFMGYDNIPFPQYISPKLTSVSNPIHEMGKMAA
EEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHH
FWVLKHVYNKTDVEIVSHFTPSLFVRDSAVKLEK
HHHHHHHHCCCHHHHHHHCCCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6283521; 9278503; 6350601; 8188660; 8982002 [H]