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The map label for this gene is yicJ [H]

Identifier: 160874334

GI number: 160874334

Start: 1445178

End: 1446503

Strand: Reverse

Name: yicJ [H]

Synonym: Sbal195_1215

Alternate gene names: 160874334

Gene position: 1446503-1445178 (Counterclockwise)

Preceding gene: 160874335

Following gene: 160874333

Centisome position: 27.05

GC content: 45.93

Gene sequence:

>1326_bases
ATGATTAGCATAAAAGAAAAAATAGCCTATGGGCTTGGCGACACTGCCAGCAACATCGTTTTTCAAACCGTTATGCTGTT
CCTTACCTTTTTTTACACCGACATTTTTGGCATTTCACCCGCCTTTGTCGGCACCATGTTTCTGCTCGTACGGTTGATTG
ATGCCGTCACCGATCCTTTAATGGGCGCATTGGCAGATCGCACGAACACGCGCTGGGGTAAATTCAGACCCTATTTACTC
TGGTTTGCCCTGCCCTTTGGGATTATCAGTGTATTGGCATTTACCACCCCAGATTTATCTGAAGATGGGAAAATGATTTA
TGCCTTCGTGACTTACACGGCATTGATGATGGTATATACCGCCATTAATATTCCCTATTGCGCCTTAGGGGGAGTACTGA
CGGCCGATCCCAAAGAGCGGGTTTCGGTGCAATCCTATCGGTTTGTGTTCGCCATGCTCGGTGGCTTACTGGTCTCAGGA
CTTACCCTTCCTTTAGTCGAATTTCTCGGTAAGGGGGACCAAGCAAAGGGCTATCAGCTTACAATTCTCGCCATGAGCAT
TTTAGGTGTTGCCATGTTTTTGGCCTGCTTCTGGGGCACAAAAGAGCGCTTACATCCGCCAGTGGATCAAAACTCCAGCT
TTAAACAGGACTTTACCTACCTATTACAGAATGACCAATGGCGAGTGTTATCCGCCGCTGCAGTTTGCCTATTATCCGGC
ATGGTATTACGCACTAGCCTCGCCATTTACTACGTGAAATATTTTCTTAACCTGCCGGATATGATCACTCTTTTCATCAC
CTTAGGTATGGTTGGCAATATTTTTGGCTGCATTCTCGCAGAGCCATTAGCCAAACGCGTTTGTAAGGTCAAAGCCTATA
TTGTGTTGCAACTCATCGCCGCAGCCCTGTGCGTATTGCACTTTTTTGTCCCTAAAGATCACGTCGTTCTCGCCTTCACT
CTTTATATTGTCTGGGGCTTTACCTTCAATATGGCCACGCCATTACTCTGGGCGAAAATGGCGGATACAGTCGATTATGG
TCAATACAAAACCGGCGTGCGTATCACAGGCATGATTTACTCCTCGGTGATTTTCTTTATCAAACTTGGAGTCGCAATTG
GCGGTGCAGCGGCAGGATGGTTACTGGCAAGTTATGGTTATCAAGCCGATGTGGTTCAGAGTGAAACGACACTCAATGGC
ATCTTAATTTCATTTACCCTTTATCCCGCTATCGGCTCAATTTTGGTCGCATTTATCATGCGTCGTTATACGCTAAATAA
CCAGAAAGTGGATGAAATCCATCTGGAATTAAATAGAGCCACCTAA

Upstream 100 bases:

>100_bases
AGCCAAACCCGAACGATAAAGGCCAGTGGTCACGCCTACAGTGACTTGATTCGCTCAAGGGCCCACTTAACCAATAACAA
TAATAAATAAGGCTAAAGCC

Downstream 100 bases:

>100_bases
TAAAATTATGCTAATCTTCAAGGCATTGTACTTTTCAGTACCTCTAATTTGAGATGATATGGCCACTATTTACGACGTTT
CGGTACTTGCAGGCGTTTCA

Product: sugar (glycoside-Pentoside-hexuronide) transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MISIKEKIAYGLGDTASNIVFQTVMLFLTFFYTDIFGISPAFVGTMFLLVRLIDAVTDPLMGALADRTNTRWGKFRPYLL
WFALPFGIISVLAFTTPDLSEDGKMIYAFVTYTALMMVYTAINIPYCALGGVLTADPKERVSVQSYRFVFAMLGGLLVSG
LTLPLVEFLGKGDQAKGYQLTILAMSILGVAMFLACFWGTKERLHPPVDQNSSFKQDFTYLLQNDQWRVLSAAAVCLLSG
MVLRTSLAIYYVKYFLNLPDMITLFITLGMVGNIFGCILAEPLAKRVCKVKAYIVLQLIAAALCVLHFFVPKDHVVLAFT
LYIVWGFTFNMATPLLWAKMADTVDYGQYKTGVRITGMIYSSVIFFIKLGVAIGGAAAGWLLASYGYQADVVQSETTLNG
ILISFTLYPAIGSILVAFIMRRYTLNNQKVDEIHLELNRAT

Sequences:

>Translated_441_residues
MISIKEKIAYGLGDTASNIVFQTVMLFLTFFYTDIFGISPAFVGTMFLLVRLIDAVTDPLMGALADRTNTRWGKFRPYLL
WFALPFGIISVLAFTTPDLSEDGKMIYAFVTYTALMMVYTAINIPYCALGGVLTADPKERVSVQSYRFVFAMLGGLLVSG
LTLPLVEFLGKGDQAKGYQLTILAMSILGVAMFLACFWGTKERLHPPVDQNSSFKQDFTYLLQNDQWRVLSAAAVCLLSG
MVLRTSLAIYYVKYFLNLPDMITLFITLGMVGNIFGCILAEPLAKRVCKVKAYIVLQLIAAALCVLHFFVPKDHVVLAFT
LYIVWGFTFNMATPLLWAKMADTVDYGQYKTGVRITGMIYSSVIFFIKLGVAIGGAAAGWLLASYGYQADVVQSETTLNG
ILISFTLYPAIGSILVAFIMRRYTLNNQKVDEIHLELNRAT
>Mature_441_residues
MISIKEKIAYGLGDTASNIVFQTVMLFLTFFYTDIFGISPAFVGTMFLLVRLIDAVTDPLMGALADRTNTRWGKFRPYLL
WFALPFGIISVLAFTTPDLSEDGKMIYAFVTYTALMMVYTAINIPYCALGGVLTADPKERVSVQSYRFVFAMLGGLLVSG
LTLPLVEFLGKGDQAKGYQLTILAMSILGVAMFLACFWGTKERLHPPVDQNSSFKQDFTYLLQNDQWRVLSAAAVCLLSG
MVLRTSLAIYYVKYFLNLPDMITLFITLGMVGNIFGCILAEPLAKRVCKVKAYIVLQLIAAALCVLHFFVPKDHVVLAFT
LYIVWGFTFNMATPLLWAKMADTVDYGQYKTGVRITGMIYSSVIFFIKLGVAIGGAAAGWLLASYGYQADVVQSETTLNG
ILISFTLYPAIGSILVAFIMRRYTLNNQKVDEIHLELNRAT

Specific function: Unknown

COG id: COG2211

COG function: function code G; Na+/melibiose symporter and related transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:galactoside symporter (TC 2.A.2) family [H]

Homologues:

Organism=Escherichia coli, GI87082306, Length=442, Percent_Identity=44.7963800904977, Blast_Score=382, Evalue=1e-107,
Organism=Escherichia coli, GI1786466, Length=437, Percent_Identity=43.2494279176201, Blast_Score=373, Evalue=1e-104,
Organism=Escherichia coli, GI1787902, Length=444, Percent_Identity=33.1081081081081, Blast_Score=213, Evalue=2e-56,
Organism=Escherichia coli, GI48994989, Length=446, Percent_Identity=30.2690582959641, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI145693206, Length=453, Percent_Identity=29.5805739514349, Blast_Score=189, Evalue=3e-49,
Organism=Escherichia coli, GI1790561, Length=450, Percent_Identity=28.8888888888889, Blast_Score=179, Evalue=3e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016196
- InterPro:   IPR001927
- InterPro:   IPR018043 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48944; Mature: 48944

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: PS00872 NA_GALACTOSIDE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHCCCCCHHHHEEEEECCC
>Mature Secondary Structure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HHHHCCCCCHHHHEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]