| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is yeiJ [C]
Identifier: 160874118
GI number: 160874118
Start: 1186499
End: 1187707
Strand: Reverse
Name: yeiJ [C]
Synonym: Sbal195_0998
Alternate gene names: 160874118
Gene position: 1187707-1186499 (Counterclockwise)
Preceding gene: 160874119
Following gene: 160874117
Centisome position: 22.21
GC content: 50.79
Gene sequence:
>1209_bases ATGACCGCGATATTAGGCATGATTAGCATCTTGTTTTTTGCTTGGTTACTGTCAGTGAACCGCAAGAACATTCCCTACCG CACTGTGATTTTAGCCCTAGGCCTACAAATTATATTTGCCCTGTTAGTGCTCTACGTCCCTGCGGGTAAGGCCGTATTGC AATCTGTTACTGCGGGCGTGTCGAGCGTGATAGCCTATGGCAACGAAGGGATTGGTTTCCTGTTTGGCGATCTCGCCACG GGTAAAGTCGGCTTCGTATTTGCGATCAATGTGTTAGGTATCATCATCTTCTTCTCGGCGCTGATTTCTGCCTTATACCA TATTGGGTTAATGCCTAAGGTGATCAACATTATTGGTGGTGGTCTGCAGCGTTTACTGGGCACGGGCCGCGCTGAGTCTT TATCTGCCACGGCGAACATCTTCGTCGGCATGATTGAAGCGCCGCTGGTGATCAAACCTTATTTAAAGCACATGAGCGAT TCGCAATTCTTTGCGGTAATGAGCTGTGGTTTAGCCTCAGTCGCGGGCGGCACTTTAGTCGGATATGCCGCTTTAGGTGT CGACCTTAACTATTTGATTGCCGCCGCCTTTATGTCTGCGCCCGCGGGTCTCTTGATGGCTAAAATCCTTATGCCGCCTA GCGAAAACGATAAAAACAGCTCAGATGAAATCACCTCAGTCGAACTGCCACGCGCCACCAATGTGGTTGAAGCCTTAGCC GATGGCGCTATGTCTGGCATGCGGATCTCAGTCGGGATTGGTGCCACTCTGCTAGCTTTTGTCAGCGTTATCGCCCTGTT GAACGGCATGTTAGGCGCTGTGGGTGAATGGTTCGGTTACCAGTTAAGCTTCGAATTTTTACTCGGTTATCTGTTCGCCC CTATGGCGTGGCTGCTGGGTATTCCTTGGCATGAAGCCATTACTGCGGGCTCACTGATTGGCCAAAAAATCGTGGTGAAT GAGTTCGTGGCCTTTATCCAGTTAATGAAAGTCGAAGACCAACTGAGCGCCCATTCTCAGGCCGTAGTCACCTTTGCCCT GTGTGGTTTTGCGAACATTTCAACCATGGCAATTTTGATCGGTGGACTGGGTAGCATGGTGCCAGAGCGCCGTGAGTTTA TCGCCCGTAATGGTTTTCGCGCCATTGCCGCTGGCGTATTCGCTAACCTCATGAGTGCGGCCATTGCCAGCGTGATCCTC TCGCTGTAG
Upstream 100 bases:
>100_bases GCTTTTATCGTAACAGCCCAGTAACGCCCTCGACTTGCCCTTACGCTGACTCGGCCTACAATGCGCGACTTCTTCTATCA CTCAAAAGAATAAACCCATT
Downstream 100 bases:
>100_bases CTTGTTTTCGATAACAGCTTTCTGTCCTCGAGTATCAATCACTGATCTCGAGCATCGAAATAGAAACAGCGGATCCCAGC GTAAACCCAAATCAAGCACG
Product: Na+ dependent nucleoside transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 402; Mature: 401
Protein sequence:
>402_residues MTAILGMISILFFAWLLSVNRKNIPYRTVILALGLQIIFALLVLYVPAGKAVLQSVTAGVSSVIAYGNEGIGFLFGDLAT GKVGFVFAINVLGIIIFFSALISALYHIGLMPKVINIIGGGLQRLLGTGRAESLSATANIFVGMIEAPLVIKPYLKHMSD SQFFAVMSCGLASVAGGTLVGYAALGVDLNYLIAAAFMSAPAGLLMAKILMPPSENDKNSSDEITSVELPRATNVVEALA DGAMSGMRISVGIGATLLAFVSVIALLNGMLGAVGEWFGYQLSFEFLLGYLFAPMAWLLGIPWHEAITAGSLIGQKIVVN EFVAFIQLMKVEDQLSAHSQAVVTFALCGFANISTMAILIGGLGSMVPERREFIARNGFRAIAAGVFANLMSAAIASVIL SL
Sequences:
>Translated_402_residues MTAILGMISILFFAWLLSVNRKNIPYRTVILALGLQIIFALLVLYVPAGKAVLQSVTAGVSSVIAYGNEGIGFLFGDLAT GKVGFVFAINVLGIIIFFSALISALYHIGLMPKVINIIGGGLQRLLGTGRAESLSATANIFVGMIEAPLVIKPYLKHMSD SQFFAVMSCGLASVAGGTLVGYAALGVDLNYLIAAAFMSAPAGLLMAKILMPPSENDKNSSDEITSVELPRATNVVEALA DGAMSGMRISVGIGATLLAFVSVIALLNGMLGAVGEWFGYQLSFEFLLGYLFAPMAWLLGIPWHEAITAGSLIGQKIVVN EFVAFIQLMKVEDQLSAHSQAVVTFALCGFANISTMAILIGGLGSMVPERREFIARNGFRAIAAGVFANLMSAAIASVIL SL >Mature_401_residues TAILGMISILFFAWLLSVNRKNIPYRTVILALGLQIIFALLVLYVPAGKAVLQSVTAGVSSVIAYGNEGIGFLFGDLATG KVGFVFAINVLGIIIFFSALISALYHIGLMPKVINIIGGGLQRLLGTGRAESLSATANIFVGMIEAPLVIKPYLKHMSDS QFFAVMSCGLASVAGGTLVGYAALGVDLNYLIAAAFMSAPAGLLMAKILMPPSENDKNSSDEITSVELPRATNVVEALAD GAMSGMRISVGIGATLLAFVSVIALLNGMLGAVGEWFGYQLSFEFLLGYLFAPMAWLLGIPWHEAITAGSLIGQKIVVNE FVAFIQLMKVEDQLSAHSQAVVTFALCGFANISTMAILIGGLGSMVPERREFIARNGFRAIAAGVFANLMSAAIASVILS L
Specific function: Unknown
COG id: COG1972
COG function: function code F; Nucleoside permease
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family [H]
Homologues:
Organism=Homo sapiens, GI227116277, Length=411, Percent_Identity=36.2530413625304, Blast_Score=249, Evalue=2e-66, Organism=Homo sapiens, GI42542381, Length=408, Percent_Identity=35.2941176470588, Blast_Score=243, Evalue=2e-64, Organism=Homo sapiens, GI11545853, Length=358, Percent_Identity=36.3128491620112, Blast_Score=234, Evalue=1e-61, Organism=Escherichia coli, GI1788485, Length=413, Percent_Identity=42.3728813559322, Blast_Score=312, Evalue=3e-86, Organism=Escherichia coli, GI1788488, Length=413, Percent_Identity=40.9200968523002, Blast_Score=288, Evalue=4e-79, Organism=Escherichia coli, GI1788737, Length=396, Percent_Identity=29.040404040404, Blast_Score=191, Evalue=8e-50, Organism=Caenorhabditis elegans, GI17560276, Length=392, Percent_Identity=31.8877551020408, Blast_Score=194, Evalue=6e-50, Organism=Caenorhabditis elegans, GI71991794, Length=410, Percent_Identity=30.2439024390244, Blast_Score=191, Evalue=6e-49, Organism=Caenorhabditis elegans, GI25146537, Length=208, Percent_Identity=31.25, Blast_Score=104, Evalue=8e-23, Organism=Drosophila melanogaster, GI45552517, Length=408, Percent_Identity=35.0490196078431, Blast_Score=249, Evalue=3e-66, Organism=Drosophila melanogaster, GI19921868, Length=408, Percent_Identity=35.0490196078431, Blast_Score=249, Evalue=3e-66, Organism=Drosophila melanogaster, GI45552519, Length=408, Percent_Identity=35.0490196078431, Blast_Score=249, Evalue=3e-66, Organism=Drosophila melanogaster, GI281360430, Length=401, Percent_Identity=32.9177057356608, Blast_Score=227, Evalue=9e-60,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008276 - InterPro: IPR018270 - InterPro: IPR011642 - InterPro: IPR011657 - InterPro: IPR002668 [H]
Pfam domain/function: PF07670 Gate; PF07662 Nucleos_tra2_C; PF01773 Nucleos_tra2_N [H]
EC number: NA
Molecular weight: Translated: 42255; Mature: 42124
Theoretical pI: Translated: 6.94; Mature: 6.94
Prosite motif: PS00018 EF_HAND_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAILGMISILFFAWLLSVNRKNIPYRTVILALGLQIIFALLVLYVPAGKAVLQSVTAGV CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH SSVIAYGNEGIGFLFGDLATGKVGFVFAINVLGIIIFFSALISALYHIGLMPKVINIIGG HHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GLQRLLGTGRAESLSATANIFVGMIEAPLVIKPYLKHMSDSQFFAVMSCGLASVAGGTLV HHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH GYAALGVDLNYLIAAAFMSAPAGLLMAKILMPPSENDKNSSDEITSVELPRATNVVEALA HHHHHHCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCEEECCCHHHHHHHHH DGAMSGMRISVGIGATLLAFVSVIALLNGMLGAVGEWFGYQLSFEFLLGYLFAPMAWLLG HHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC IPWHEAITAGSLIGQKIVVNEFVAFIQLMKVEDQLSAHSQAVVTFALCGFANISTMAILI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GGLGSMVPERREFIARNGFRAIAAGVFANLMSAAIASVILSL HHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TAILGMISILFFAWLLSVNRKNIPYRTVILALGLQIIFALLVLYVPAGKAVLQSVTAGV HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH SSVIAYGNEGIGFLFGDLATGKVGFVFAINVLGIIIFFSALISALYHIGLMPKVINIIGG HHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GLQRLLGTGRAESLSATANIFVGMIEAPLVIKPYLKHMSDSQFFAVMSCGLASVAGGTLV HHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH GYAALGVDLNYLIAAAFMSAPAGLLMAKILMPPSENDKNSSDEITSVELPRATNVVEALA HHHHHHCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCEEECCCHHHHHHHHH DGAMSGMRISVGIGATLLAFVSVIALLNGMLGAVGEWFGYQLSFEFLLGYLFAPMAWLLG HHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC IPWHEAITAGSLIGQKIVVNEFVAFIQLMKVEDQLSAHSQAVVTFALCGFANISTMAILI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GGLGSMVPERREFIARNGFRAIAAGVFANLMSAAIASVILSL HHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]