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The map label for this gene is ydiF [H]

Identifier: 159899867

GI number: 159899867

Start: 4225553

End: 4227196

Strand: Direct

Name: ydiF [H]

Synonym: Haur_3350

Alternate gene names: 159899867

Gene position: 4225553-4227196 (Clockwise)

Preceding gene: 159899864

Following gene: 159899868

Centisome position: 66.58

GC content: 49.88

Gene sequence:

>1644_bases
ATGTTATTGCAGATTAACAACCTCAACAAAGCCTATGGCCCACAGCAAATCCTCAGCGATATCGCGTTAATTATCAATCG
TGGCGAACGAATTGGCCTCGTTGGCCCAAATGGCGTTGGTAAATCGACCTTATTGCGCTTAATTATTGGTCAAGAGCAAG
CCGATGCTGGCACAATTCGCTGGGGCGAGGGCTGTGAATATGGCTATTTAACTCAGCAATTAATCACCCCTAGCGAGCTG
AATGTTGAGCAATTACTGGCAGCTAGCCAACAACAACTCAGCCAACTCGGCCAACAGCTTGAGCAATTAAGCAACCAAAT
GGCCCATGCCGACCCCGATCAACTTGCCGATCTTTTAGAACGTTATGGCGATGTGGCCGAGCGCTTTGAGTTGCGTGGTG
GCTACGAACTGGATTACCGAATTGATCAGGTGCTTGCGGGCTTGGGCTTAAGCCATGTGCCCCGAGAACGCTCAGTCCAA
GCGCTATCGGGCGGCGAGAAAACCCGACTTGGTTTGGCCGCGCTGCTAATTAGCAACCCCGATGTGTTATTGCTCGATGA
ACCAACCAATCACCTTGATCATCAGGCTAGTGCATGGCTTGAAACGTGGCTCCAAGCCCATAACGGGGCAATCTTGGTGG
TTTCACACGATCGAGCGTTTCTTGATCAAGTGGCAACCACAATTATTGAGCTTGATGAACATACCCATCAACTCAAAACG
TATCCTGGTAACTACAGCGCCTATTTTGCCGCCAAGCAAGCTGAACGCGAACGCTGGGAAGCTGATTATCAACGGCAGCA
GGTCGAAATTCGCCAATTACAAATGCGAGCCAAAGCCCAAAATCAACAAGTTGCCCATAATCGAGCGCCGCGTGATAACG
ATGGTTTTATTTATCATTCCAAGGGCGAAAATGTGGCGGCGGCGGTTTCACGTAATCTGCGTTCAGCCCAACAAGCGCTT
GAGCGCATTTTGGCAGATCCAATTCCTGAGCCACCCAAACCACTGGCGATCAACCCAACCTTTAATCCCAGCCCCGATGG
TAGCCAACAAATGCTGTCGATCGAAGGCGTGAGCTATCAGCGTGAGCAACAGCCAATCCTCGAACAGATCGATTTGGAAT
TACGGCCCCGCCAACGCATCCTGATTACGGGAGCCAATGGCAGCGGCAAAACCACCTTGCTAGACCTGATTGCCGGCGAT
TTGCAACCAAGCACAGGCCAAATTCGCTATGGCCCAAACCTACAAATTGGCTATTTACGCCAAGAATATCAGCGCCCCAA
GCCTGAGCAAAGCCTATTTGAAGCCTATCGCGAAGGTTTGCTGGGCTTTAATAAAGATCTGATCAACGAGCTAGTTTGGT
CAGGCTTATTCCGCTATGCTGAAGTCAATCGGGCGGTTGGCAGCATTAGCACAGGTCAGTTGCATAAGTTACAATTAGCC
CGACTGATTGCCGCACGCGCTAATTTGTTGTTGCTTGATGAACCAACCAACCACTTAAGTTTTGATGTTTTAGAGCAATT
CGAGGCTGCGCTCAATCAGTTTGCTGGGCCAATCATTGCGGTTTCGCATGATCGGCGCTTTATTCAGCAATTTGCTGGCG
AGATTTGGCATTTACAACAGGGACGGTTAACGCGCCTATGCTGA

Upstream 100 bases:

>100_bases
ATTGATTATTTTAGGGAGTTATACCAATGGAAATCAACTGTTTGATGATCGAAAACCAACGTTTAGGCACTATAAATCAA
GCTAGGAGATCATCGAACAT

Downstream 100 bases:

>100_bases
CATCATTTGAACAAACAATTATCGAACCAGCCCGTTATCAGCTAGAAACTTTGATTATTGGCCAAGAATTGCTTGGACTC
GAACAAACTGCCTCAACCAA

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 547; Mature: 547

Protein sequence:

>547_residues
MLLQINNLNKAYGPQQILSDIALIINRGERIGLVGPNGVGKSTLLRLIIGQEQADAGTIRWGEGCEYGYLTQQLITPSEL
NVEQLLAASQQQLSQLGQQLEQLSNQMAHADPDQLADLLERYGDVAERFELRGGYELDYRIDQVLAGLGLSHVPRERSVQ
ALSGGEKTRLGLAALLISNPDVLLLDEPTNHLDHQASAWLETWLQAHNGAILVVSHDRAFLDQVATTIIELDEHTHQLKT
YPGNYSAYFAAKQAERERWEADYQRQQVEIRQLQMRAKAQNQQVAHNRAPRDNDGFIYHSKGENVAAAVSRNLRSAQQAL
ERILADPIPEPPKPLAINPTFNPSPDGSQQMLSIEGVSYQREQQPILEQIDLELRPRQRILITGANGSGKTTLLDLIAGD
LQPSTGQIRYGPNLQIGYLRQEYQRPKPEQSLFEAYREGLLGFNKDLINELVWSGLFRYAEVNRAVGSISTGQLHKLQLA
RLIAARANLLLLDEPTNHLSFDVLEQFEAALNQFAGPIIAVSHDRRFIQQFAGEIWHLQQGRLTRLC

Sequences:

>Translated_547_residues
MLLQINNLNKAYGPQQILSDIALIINRGERIGLVGPNGVGKSTLLRLIIGQEQADAGTIRWGEGCEYGYLTQQLITPSEL
NVEQLLAASQQQLSQLGQQLEQLSNQMAHADPDQLADLLERYGDVAERFELRGGYELDYRIDQVLAGLGLSHVPRERSVQ
ALSGGEKTRLGLAALLISNPDVLLLDEPTNHLDHQASAWLETWLQAHNGAILVVSHDRAFLDQVATTIIELDEHTHQLKT
YPGNYSAYFAAKQAERERWEADYQRQQVEIRQLQMRAKAQNQQVAHNRAPRDNDGFIYHSKGENVAAAVSRNLRSAQQAL
ERILADPIPEPPKPLAINPTFNPSPDGSQQMLSIEGVSYQREQQPILEQIDLELRPRQRILITGANGSGKTTLLDLIAGD
LQPSTGQIRYGPNLQIGYLRQEYQRPKPEQSLFEAYREGLLGFNKDLINELVWSGLFRYAEVNRAVGSISTGQLHKLQLA
RLIAARANLLLLDEPTNHLSFDVLEQFEAALNQFAGPIIAVSHDRRFIQQFAGEIWHLQQGRLTRLC
>Mature_547_residues
MLLQINNLNKAYGPQQILSDIALIINRGERIGLVGPNGVGKSTLLRLIIGQEQADAGTIRWGEGCEYGYLTQQLITPSEL
NVEQLLAASQQQLSQLGQQLEQLSNQMAHADPDQLADLLERYGDVAERFELRGGYELDYRIDQVLAGLGLSHVPRERSVQ
ALSGGEKTRLGLAALLISNPDVLLLDEPTNHLDHQASAWLETWLQAHNGAILVVSHDRAFLDQVATTIIELDEHTHQLKT
YPGNYSAYFAAKQAERERWEADYQRQQVEIRQLQMRAKAQNQQVAHNRAPRDNDGFIYHSKGENVAAAVSRNLRSAQQAL
ERILADPIPEPPKPLAINPTFNPSPDGSQQMLSIEGVSYQREQQPILEQIDLELRPRQRILITGANGSGKTTLLDLIAGD
LQPSTGQIRYGPNLQIGYLRQEYQRPKPEQSLFEAYREGLLGFNKDLINELVWSGLFRYAEVNRAVGSISTGQLHKLQLA
RLIAARANLLLLDEPTNHLSFDVLEQFEAALNQFAGPIIAVSHDRRFIQQFAGEIWHLQQGRLTRLC

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI27881506, Length=559, Percent_Identity=28.9803220035778, Blast_Score=206, Evalue=4e-53,
Organism=Homo sapiens, GI148612853, Length=573, Percent_Identity=30.3664921465969, Blast_Score=206, Evalue=5e-53,
Organism=Homo sapiens, GI10947137, Length=559, Percent_Identity=28.9803220035778, Blast_Score=206, Evalue=5e-53,
Organism=Homo sapiens, GI69354671, Length=542, Percent_Identity=30.2583025830258, Blast_Score=189, Evalue=5e-48,
Organism=Homo sapiens, GI10947135, Length=542, Percent_Identity=30.2583025830258, Blast_Score=189, Evalue=7e-48,
Organism=Escherichia coli, GI1787041, Length=551, Percent_Identity=28.6751361161525, Blast_Score=231, Evalue=9e-62,
Organism=Escherichia coli, GI1789751, Length=549, Percent_Identity=31.3296903460838, Blast_Score=224, Evalue=8e-60,
Organism=Escherichia coli, GI1787182, Length=543, Percent_Identity=29.097605893186, Blast_Score=204, Evalue=9e-54,
Organism=Escherichia coli, GI2367384, Length=547, Percent_Identity=29.6160877513711, Blast_Score=204, Evalue=1e-53,
Organism=Escherichia coli, GI1788225, Length=240, Percent_Identity=30.8333333333333, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1788165, Length=202, Percent_Identity=28.2178217821782, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1789593, Length=206, Percent_Identity=28.1553398058252, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1786398, Length=239, Percent_Identity=27.1966527196653, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI48995001, Length=226, Percent_Identity=30.0884955752212, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789891, Length=229, Percent_Identity=25.764192139738, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17555318, Length=540, Percent_Identity=28.5185185185185, Blast_Score=203, Evalue=2e-52,
Organism=Caenorhabditis elegans, GI17559834, Length=541, Percent_Identity=27.7264325323475, Blast_Score=200, Evalue=1e-51,
Organism=Caenorhabditis elegans, GI17553372, Length=556, Percent_Identity=30.0359712230216, Blast_Score=183, Evalue=2e-46,
Organism=Saccharomyces cerevisiae, GI6321121, Length=559, Percent_Identity=30.2325581395349, Blast_Score=196, Evalue=9e-51,
Organism=Saccharomyces cerevisiae, GI6320874, Length=554, Percent_Identity=27.0758122743682, Blast_Score=192, Evalue=2e-49,
Organism=Saccharomyces cerevisiae, GI6325030, Length=246, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6323278, Length=246, Percent_Identity=29.2682926829268, Blast_Score=96, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6324314, Length=238, Percent_Identity=31.5126050420168, Blast_Score=95, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6324498, Length=210, Percent_Identity=29.0476190476191, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24666836, Length=563, Percent_Identity=31.0834813499112, Blast_Score=214, Evalue=1e-55,
Organism=Drosophila melanogaster, GI24642252, Length=561, Percent_Identity=28.3422459893048, Blast_Score=207, Evalue=2e-53,
Organism=Drosophila melanogaster, GI18859989, Length=561, Percent_Identity=28.3422459893048, Blast_Score=207, Evalue=2e-53,
Organism=Drosophila melanogaster, GI24641342, Length=553, Percent_Identity=28.2097649186257, Blast_Score=204, Evalue=1e-52,
Organism=Drosophila melanogaster, GI24661270, Length=219, Percent_Identity=29.6803652968037, Blast_Score=76, Evalue=5e-14,
Organism=Drosophila melanogaster, GI21355589, Length=219, Percent_Identity=29.6803652968037, Blast_Score=76, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 61296; Mature: 61296

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLQINNLNKAYGPQQILSDIALIINRGERIGLVGPNGVGKSTLLRLIIGQEQADAGTIR
CEEEEECCCHHCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEE
WGEGCEYGYLTQQLITPSELNVEQLLAASQQQLSQLGQQLEQLSNQMAHADPDQLADLLE
CCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
RYGDVAERFELRGGYELDYRIDQVLAGLGLSHVPRERSVQALSGGEKTRLGLAALLISNP
HHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHEEEECCC
DVLLLDEPTNHLDHQASAWLETWLQAHNGAILVVSHDRAFLDQVATTIIELDEHTHQLKT
CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHC
YPGNYSAYFAAKQAERERWEADYQRQQVEIRQLQMRAKAQNQQVAHNRAPRDNDGFIYHS
CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
KGENVAAAVSRNLRSAQQALERILADPIPEPPKPLAINPTFNPSPDGSQQMLSIEGVSYQ
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCEEEECCCCCC
REQQPILEQIDLELRPRQRILITGANGSGKTTLLDLIAGDLQPSTGQIRYGPNLQIGYLR
HHHCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEECCCCEEHHHH
QEYQRPKPEQSLFEAYREGLLGFNKDLINELVWSGLFRYAEVNRAVGSISTGQLHKLQLA
HHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
RLIAARANLLLLDEPTNHLSFDVLEQFEAALNQFAGPIIAVSHDRRFIQQFAGEIWHLQQ
HHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCC
GRLTRLC
CCHHCCC
>Mature Secondary Structure
MLLQINNLNKAYGPQQILSDIALIINRGERIGLVGPNGVGKSTLLRLIIGQEQADAGTIR
CEEEEECCCHHCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEE
WGEGCEYGYLTQQLITPSELNVEQLLAASQQQLSQLGQQLEQLSNQMAHADPDQLADLLE
CCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
RYGDVAERFELRGGYELDYRIDQVLAGLGLSHVPRERSVQALSGGEKTRLGLAALLISNP
HHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHEEEECCC
DVLLLDEPTNHLDHQASAWLETWLQAHNGAILVVSHDRAFLDQVATTIIELDEHTHQLKT
CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHC
YPGNYSAYFAAKQAERERWEADYQRQQVEIRQLQMRAKAQNQQVAHNRAPRDNDGFIYHS
CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
KGENVAAAVSRNLRSAQQALERILADPIPEPPKPLAINPTFNPSPDGSQQMLSIEGVSYQ
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCEEEECCCCCC
REQQPILEQIDLELRPRQRILITGANGSGKTTLLDLIAGDLQPSTGQIRYGPNLQIGYLR
HHHCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEECCCCEEHHHH
QEYQRPKPEQSLFEAYREGLLGFNKDLINELVWSGLFRYAEVNRAVGSISTGQLHKLQLA
HHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
RLIAARANLLLLDEPTNHLSFDVLEQFEAALNQFAGPIIAVSHDRRFIQQFAGEIWHLQQ
HHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCC
GRLTRLC
CCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]