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The map label for this gene is ydcI [H]

Identifier: 159899862

GI number: 159899862

Start: 4217602

End: 4219722

Strand: Direct

Name: ydcI [H]

Synonym: Haur_3345

Alternate gene names: 159899862

Gene position: 4217602-4219722 (Clockwise)

Preceding gene: 159899861

Following gene: 159899863

Centisome position: 66.45

GC content: 52.52

Gene sequence:

>2121_bases
ATGGATTATGCCCATTTAATTGCCAAAGGCTTGACGGTGCGTGCCGAGCAAGTTACCGCTGCGATTCAATTATTCGATGC
AGGCAATACTTTGCCGTTCGTCGCTCGTTATCGTAAAGAGCAAACTGGTGGCTTGGATGAAGAACAATTACGCAGCATTC
AAAGCCAAATTGCCCGTTTACGTGAGCTTGACGAGCGGCGCGAGGCGATTTTGAGTGCTCTGCGCGAGCAAGGCAATTTG
AGTGATGAATTGGCCCAAGCCTTGGCCGCCGCTACTGATAAAACCACCCTCGAAGATTTGTATGCGCCGTTCAAGCCCAA
ACGCCGTACCCGCGCCAGCATAGCCCGCGAACGTGGCCTCGAAGGCTTGGCTGAAATTATTCAAATGCAGCCGAATGATC
CGATTGATGCTACCGCTCGCCAGTTTCTCAACGAACAGGTTGCCAGCATTGAAGAGGCCTTGGCTGGAGCACGCGATATT
GTAGCCGAGCAAATCAGCGATCATCCTGAGGTGCGCCGTCAAACTCGCGAACGCGCTTTGCGTTGGGGCGTGGTTCGCAG
CGAGTTAATCGCCGATGCCGAGGATAGCAAGGGCGTATATCAAACCTACTATCAATTTGAGAGCACGGCCAGCCGCCTCA
AGCCTTACCAAGTGTTGGCGCTCAACCGTGGTGAAACCGAACATATTTTGCGTTTTAAAATTCAGATGGATCAACGTGAT
TGGTTTGATGTGGTTGCCAAGTATTTTCCGCTTGATCAACGTTCAGCTTGGGCCGAGCAACTGCGCTTGGCGATCCACGA
TGGCGCTGAGCGATTGCTCTTGCCAGCAATTGAACGCGATGTGCGCCGCGCCTTGACTGAGCAAGCCGAAAGCCATGCGA
TCACCGTCTTTGCCAAGAATGTGCATTCGTTGTTGCTGCAAGCGCCAATCGCCAATAATGTGGTGCTCGGGCTTGATCCA
GGCTACCGCACTGGTTGCAAAGTGGCGATTATCGGCCAAACTGGCAATGTGCTCACGACTGCCACGATTTATCCTCACAG
CGGCGCGGCAGCGCGTGAACGGGCGTTTCAAGAATTGCAAAGCTTGATCAAACGCTATGCTGTGAGTTTGATTGCCATTG
GCAATGGCACGGCCTCGCGCGAAACTGAGCAATTAGTCGCCGATGTGATTCGCCACCAAACTGGTTTGCACTATTTGATT
GTCAGCGAAGCAGGAGCCAGTGTTTACAGTGCTAGTACGCTTGCCCGCAGCGAATTGCCTGATCTCGATGTCAGCTTGCG
CGGCGCGGTTTCGATTGCACGGCGGGTGCAAGATCCCTTGGCCGAGTTGGTCAAAATCGAGCCAAAAGCGATTGGCGTAG
GCATGTATCAACACGATGTTGATCAATCGGCCTTGGGCAATGCGCTTGATGGCGTGGTTGAGAGCGCAGTTAATAATGTT
GGGGTTGATGTCAACACCGCTTCGCCTGCGCTTTTACGCTATGTTGCCGGGATTGGCCCCAAACTTTCGGCTCAAATTGT
CAGCCATCGCGAGGAACATGGCCCATTTCGTTCGCGGGTTGCACTCAAAAAGGTCAAAGGGCTTGGGCCAAAAGCCTTTG
AACAGGCCGCCGGATTTTTGCGAATTCGCGATGGCGATGAAGCCTTGGATGCCAGCGCAATTCACCCCGAAAGTTATACG
GTTACCCGTAATTTGTTGGACAAGCTGAATATTAACGCCAAAACAGGCCGCAACGAACGAATCAAACGCTTGGAAGATTT
GAAAAATCAGCCATTGCATAGCCTTGCGGCGGAATTGGGCACAGGCGTACCAACCCTGAGTGATATTATTGACCAACTGC
TGCGGCCAGGTCGCGACCCCCGCGAGGATGTGCCAGCACCAATTTTGCGCAGCGATGTGCTGGCTTTTGAAGATTTGCAG
CCGGGCATGCAGCTCAAAGGCACAGTGCGCAATGTCGTCGATTGGGGCGCATTTATCGATTTGGGGGTTAAGCACGATGG
CTTATTGCACCGTTCGCAAATTCCCCGTGGCCTGAGTTTGAGTGTTGGCGATATTGTCGATGTTAGCATTCAATCGATCG
ACCCAGATCGCAAACGGATTGCCTTAGTTTTAGCACAATAA

Upstream 100 bases:

>100_bases
CACCATTACAGATAGCCTATAGCCTTCTCCCCTTCGTGCTCTTCGTGTCCTTCGTCGTTTCAACATTCAACATATTCGTT
TAGCTAGATTGAGAATTTCC

Downstream 100 bases:

>100_bases
GCCTCAGCCTGCGGTACAATAGACGGCGGCGCTGGCTCGATCTAGCGCCTTAAGATTTGCTTTATCAACAAAAGAGGTAG
CTTGTGAGCACGACTCCTAT

Product: RNA-binding S1 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 706; Mature: 706

Protein sequence:

>706_residues
MDYAHLIAKGLTVRAEQVTAAIQLFDAGNTLPFVARYRKEQTGGLDEEQLRSIQSQIARLRELDERREAILSALREQGNL
SDELAQALAAATDKTTLEDLYAPFKPKRRTRASIARERGLEGLAEIIQMQPNDPIDATARQFLNEQVASIEEALAGARDI
VAEQISDHPEVRRQTRERALRWGVVRSELIADAEDSKGVYQTYYQFESTASRLKPYQVLALNRGETEHILRFKIQMDQRD
WFDVVAKYFPLDQRSAWAEQLRLAIHDGAERLLLPAIERDVRRALTEQAESHAITVFAKNVHSLLLQAPIANNVVLGLDP
GYRTGCKVAIIGQTGNVLTTATIYPHSGAAARERAFQELQSLIKRYAVSLIAIGNGTASRETEQLVADVIRHQTGLHYLI
VSEAGASVYSASTLARSELPDLDVSLRGAVSIARRVQDPLAELVKIEPKAIGVGMYQHDVDQSALGNALDGVVESAVNNV
GVDVNTASPALLRYVAGIGPKLSAQIVSHREEHGPFRSRVALKKVKGLGPKAFEQAAGFLRIRDGDEALDASAIHPESYT
VTRNLLDKLNINAKTGRNERIKRLEDLKNQPLHSLAAELGTGVPTLSDIIDQLLRPGRDPREDVPAPILRSDVLAFEDLQ
PGMQLKGTVRNVVDWGAFIDLGVKHDGLLHRSQIPRGLSLSVGDIVDVSIQSIDPDRKRIALVLAQ

Sequences:

>Translated_706_residues
MDYAHLIAKGLTVRAEQVTAAIQLFDAGNTLPFVARYRKEQTGGLDEEQLRSIQSQIARLRELDERREAILSALREQGNL
SDELAQALAAATDKTTLEDLYAPFKPKRRTRASIARERGLEGLAEIIQMQPNDPIDATARQFLNEQVASIEEALAGARDI
VAEQISDHPEVRRQTRERALRWGVVRSELIADAEDSKGVYQTYYQFESTASRLKPYQVLALNRGETEHILRFKIQMDQRD
WFDVVAKYFPLDQRSAWAEQLRLAIHDGAERLLLPAIERDVRRALTEQAESHAITVFAKNVHSLLLQAPIANNVVLGLDP
GYRTGCKVAIIGQTGNVLTTATIYPHSGAAARERAFQELQSLIKRYAVSLIAIGNGTASRETEQLVADVIRHQTGLHYLI
VSEAGASVYSASTLARSELPDLDVSLRGAVSIARRVQDPLAELVKIEPKAIGVGMYQHDVDQSALGNALDGVVESAVNNV
GVDVNTASPALLRYVAGIGPKLSAQIVSHREEHGPFRSRVALKKVKGLGPKAFEQAAGFLRIRDGDEALDASAIHPESYT
VTRNLLDKLNINAKTGRNERIKRLEDLKNQPLHSLAAELGTGVPTLSDIIDQLLRPGRDPREDVPAPILRSDVLAFEDLQ
PGMQLKGTVRNVVDWGAFIDLGVKHDGLLHRSQIPRGLSLSVGDIVDVSIQSIDPDRKRIALVLAQ
>Mature_706_residues
MDYAHLIAKGLTVRAEQVTAAIQLFDAGNTLPFVARYRKEQTGGLDEEQLRSIQSQIARLRELDERREAILSALREQGNL
SDELAQALAAATDKTTLEDLYAPFKPKRRTRASIARERGLEGLAEIIQMQPNDPIDATARQFLNEQVASIEEALAGARDI
VAEQISDHPEVRRQTRERALRWGVVRSELIADAEDSKGVYQTYYQFESTASRLKPYQVLALNRGETEHILRFKIQMDQRD
WFDVVAKYFPLDQRSAWAEQLRLAIHDGAERLLLPAIERDVRRALTEQAESHAITVFAKNVHSLLLQAPIANNVVLGLDP
GYRTGCKVAIIGQTGNVLTTATIYPHSGAAARERAFQELQSLIKRYAVSLIAIGNGTASRETEQLVADVIRHQTGLHYLI
VSEAGASVYSASTLARSELPDLDVSLRGAVSIARRVQDPLAELVKIEPKAIGVGMYQHDVDQSALGNALDGVVESAVNNV
GVDVNTASPALLRYVAGIGPKLSAQIVSHREEHGPFRSRVALKKVKGLGPKAFEQAAGFLRIRDGDEALDASAIHPESYT
VTRNLLDKLNINAKTGRNERIKRLEDLKNQPLHSLAAELGTGVPTLSDIIDQLLRPGRDPREDVPAPILRSDVLAFEDLQ
PGMQLKGTVRNVVDWGAFIDLGVKHDGLLHRSQIPRGLSLSVGDIVDVSIQSIDPDRKRIALVLAQ

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=784, Percent_Identity=33.6734693877551, Blast_Score=413, Evalue=1e-115,
Organism=Homo sapiens, GI27597090, Length=610, Percent_Identity=25.0819672131148, Blast_Score=122, Evalue=1e-27,
Organism=Escherichia coli, GI87082262, Length=730, Percent_Identity=44.3835616438356, Blast_Score=561, Evalue=1e-161,
Organism=Caenorhabditis elegans, GI17511129, Length=739, Percent_Identity=29.6346414073072, Blast_Score=258, Evalue=7e-69,
Organism=Caenorhabditis elegans, GI17552892, Length=310, Percent_Identity=28.3870967741935, Blast_Score=89, Evalue=6e-18,
Organism=Drosophila melanogaster, GI62484314, Length=759, Percent_Identity=31.8840579710145, Blast_Score=379, Evalue=1e-105,
Organism=Drosophila melanogaster, GI24640080, Length=584, Percent_Identity=23.458904109589, Blast_Score=99, Evalue=8e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 77752; Mature: 77752

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYAHLIAKGLTVRAEQVTAAIQLFDAGNTLPFVARYRKEQTGGLDEEQLRSIQSQIARL
CCHHHHHHHCCHHHHHHHHHHHHEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
RELDERREAILSALREQGNLSDELAQALAAATDKTTLEDLYAPFKPKRRTRASIARERGL
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHCH
EGLAEIIQMQPNDPIDATARQFLNEQVASIEEALAGARDIVAEQISDHPEVRRQTRERAL
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
RWGVVRSELIADAEDSKGVYQTYYQFESTASRLKPYQVLALNRGETEHILRFKIQMDQRD
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEECCCCH
WFDVVAKYFPLDQRSAWAEQLRLAIHDGAERLLLPAIERDVRRALTEQAESHAITVFAKN
HHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHH
VHSLLLQAPIANNVVLGLDPGYRTGCKVAIIGQTGNVLTTATIYPHSGAAARERAFQELQ
HHHHHHHCCCCCCEEEECCCCCCCCCEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHH
SLIKRYAVSLIAIGNGTASRETEQLVADVIRHQTGLHYLIVSEAGASVYSASTLARSELP
HHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCC
DLDVSLRGAVSIARRVQDPLAELVKIEPKAIGVGMYQHDVDQSALGNALDGVVESAVNNV
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHEECCHHHHCCCHHHHHHHHHHHHHHHHHHC
GVDVNTASPALLRYVAGIGPKLSAQIVSHREEHGPFRSRVALKKVKGLGPKAFEQAAGFL
CCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHCCEE
RIRDGDEALDASAIHPESYTVTRNLLDKLNINAKTGRNERIKRLEDLKNQPLHSLAAELG
EEECCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHC
TGVPTLSDIIDQLLRPGRDPREDVPAPILRSDVLAFEDLQPGMQLKGTVRNVVDWGAFID
CCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
LGVKHDGLLHRSQIPRGLSLSVGDIVDVSIQSIDPDRKRIALVLAQ
CCCCCCCCHHHHHCCCCCCCCCCCEEEEEHHCCCCCCCEEEEEECC
>Mature Secondary Structure
MDYAHLIAKGLTVRAEQVTAAIQLFDAGNTLPFVARYRKEQTGGLDEEQLRSIQSQIARL
CCHHHHHHHCCHHHHHHHHHHHHEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
RELDERREAILSALREQGNLSDELAQALAAATDKTTLEDLYAPFKPKRRTRASIARERGL
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHCH
EGLAEIIQMQPNDPIDATARQFLNEQVASIEEALAGARDIVAEQISDHPEVRRQTRERAL
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
RWGVVRSELIADAEDSKGVYQTYYQFESTASRLKPYQVLALNRGETEHILRFKIQMDQRD
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEECCCCH
WFDVVAKYFPLDQRSAWAEQLRLAIHDGAERLLLPAIERDVRRALTEQAESHAITVFAKN
HHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHH
VHSLLLQAPIANNVVLGLDPGYRTGCKVAIIGQTGNVLTTATIYPHSGAAARERAFQELQ
HHHHHHHCCCCCCEEEECCCCCCCCCEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHH
SLIKRYAVSLIAIGNGTASRETEQLVADVIRHQTGLHYLIVSEAGASVYSASTLARSELP
HHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCC
DLDVSLRGAVSIARRVQDPLAELVKIEPKAIGVGMYQHDVDQSALGNALDGVVESAVNNV
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHEECCHHHHCCCHHHHHHHHHHHHHHHHHHC
GVDVNTASPALLRYVAGIGPKLSAQIVSHREEHGPFRSRVALKKVKGLGPKAFEQAAGFL
CCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHCCEE
RIRDGDEALDASAIHPESYTVTRNLLDKLNINAKTGRNERIKRLEDLKNQPLHSLAAELG
EEECCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHC
TGVPTLSDIIDQLLRPGRDPREDVPAPILRSDVLAFEDLQPGMQLKGTVRNVVDWGAFID
CCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
LGVKHDGLLHRSQIPRGLSLSVGDIVDVSIQSIDPDRKRIALVLAQ
CCCCCCCCHHHHHCCCCCCCCCCCEEEEEHHCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]