Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
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Accession | NC_009972 |
Length | 6,346,587 |
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The map label for this gene is 159899861
Identifier: 159899861
GI number: 159899861
Start: 4215732
End: 4217276
Strand: Direct
Name: 159899861
Synonym: Haur_3344
Alternate gene names: NA
Gene position: 4215732-4217276 (Clockwise)
Preceding gene: 159899859
Following gene: 159899862
Centisome position: 66.43
GC content: 52.49
Gene sequence:
>1545_bases ATGACGGGTGAGGCTCACGACATCCCAGTGCCCCAAGCCTCGTTTTGTCTAAGTAGCAACCATGTGCGTTGCCCATTATA TGCAGGTGAAGATCTGCCGGTTGCGCAGGTTATCAGCACGCCTACGCCAGTTGCGGTGGGTGGTTGGCGCGGCTGGCTGG CTGGTTTATCGACCCGCGATCGCCGCATTTATGCCACCTTGGTGGGCCTACTTGGCTTAATTATTGTGGCCTATGCGATT AGCGGCGTTGTTTTATTTAGCAACCCCGATAACCCTGCCACGCCTAGCGCTACCTCGCAAGTGCTTCAGCCAACATCCGA TAGCCCAACATTAACGGTTTCACCATCGCCAAATGCCTTTGCCACAGCAGCGGTTCGTCAAACTCAAACAGCCGAAGTTA TTGCTCAAACCACTACCGTCACTCCCTCGGTCTCTGCTACGTCATCGGCTTCTGCAACCACTCAGGTGATTCTTGCATCG CCAACCTTTGTTATTGTACCGCCAACTGAAGATGTGATTGTCGCCTCTGCTACTCCTAGCATTCCGTTTGCCACCGATCT CCCAACCTTTGAGCCAACGTTATCGCCAATTGCGACAACTGCCGTGCCAACGCTTGAACCAACCGCAGAACCGACTGTTG AACCAACTCTTGAGCCAACGCTCGAACCAACAGTTGAGCCGACTGTCGAGCCAACGCCTGAACCGATCCCTGAGCCAACT GCTCAGCCGACCGAGGAAACTGGCGGTCGCGAGGTTAATCAATTAACCTTGTTTTTTGCCGATAGCACTGGCCAAGTGTT AGTGCCAGTCTCGCGCCAGATTGCGGCAACTCGTCAGTCACGGACTGCCGCAATCCAACAGTTAATTCAAGGTGCACGCA GCGATTTGCGTAGTTTGTTGCCCAGCGATACCCAATTACTTGGGCTACGCTTGAATAATGGCATTGCTACCGCTAATTTT AACCGTATCCCGACGTTTGGCAATTCAAGCCTCGAAGATTTGGGTTTGCGTTCGATTGTGTTGGCCTTGACTGAGCAACC AGAGGTTAAGCAGGTGCAAATTCAAGTCCAAGGCCAAAATTTAGGTGGCCTGCGCTATCGTCCCAATGTCAACCCCGATA ATCCGCAGGGTTTAAATGGTCAGTTTAACACAACTTCGTTCTTGCCGTTATATTTTCAGCAAAGTAGTGGCCGTTGGGTG CGGGTGATGCGGCTTGTGCCAAGCACCAAAACCGAGGCCCGCGCTACCGTCAATGAGCTGATTCGCGGAGCTGGCCGTTA TAGTCATGTTGTTAGTAGTGCCATCCCGAGCGCCAGCCAAGTACGGCGTTTGGTGATTGTTGATGGGGTTGCTCAACTTG ATCTTAGCGCTGAATTCAGCCAAACCAGCAATCCGCAGGCGGCGGTTGATGCCTTGGTCTTGGCGTTAACTTCGTTCAGT AGTGTGCAACAGGTACAGATTACCGTCGAAGGCCAATCGCTCAGCAGCATTTGGGGCGCAACATTCAGCAATCCTTTCGT TCGCCCACAACTTAACCCTGAATAG
Upstream 100 bases:
>100_bases GAGGAACGTCGTGGAACCAGTGCATCACTGCCCATATGTGGGCCTTAAACAAAATCGTGCGATTCGTTTCGCGAGTCCTA CGCCGGAGCACCGCTGCTAC
Downstream 100 bases:
>100_bases CATTAATTGGGGATCGGTTGTTGGGGGTTGGGGATCGGGACGTAGGGCTATTGGCTTTTGGCTATGGAATGGTGTATTGG ATTACCATTCCCTCACCCCT
Product: PT repeat-containing protein
Products: NA
Alternate protein names: Germination Protein; PT Repeat-Containing Protein; Spore Germination Protein-Like
Number of amino acids: Translated: 514; Mature: 513
Protein sequence:
>514_residues MTGEAHDIPVPQASFCLSSNHVRCPLYAGEDLPVAQVISTPTPVAVGGWRGWLAGLSTRDRRIYATLVGLLGLIIVAYAI SGVVLFSNPDNPATPSATSQVLQPTSDSPTLTVSPSPNAFATAAVRQTQTAEVIAQTTTVTPSVSATSSASATTQVILAS PTFVIVPPTEDVIVASATPSIPFATDLPTFEPTLSPIATTAVPTLEPTAEPTVEPTLEPTLEPTVEPTVEPTPEPIPEPT AQPTEETGGREVNQLTLFFADSTGQVLVPVSRQIAATRQSRTAAIQQLIQGARSDLRSLLPSDTQLLGLRLNNGIATANF NRIPTFGNSSLEDLGLRSIVLALTEQPEVKQVQIQVQGQNLGGLRYRPNVNPDNPQGLNGQFNTTSFLPLYFQQSSGRWV RVMRLVPSTKTEARATVNELIRGAGRYSHVVSSAIPSASQVRRLVIVDGVAQLDLSAEFSQTSNPQAAVDALVLALTSFS SVQQVQITVEGQSLSSIWGATFSNPFVRPQLNPE
Sequences:
>Translated_514_residues MTGEAHDIPVPQASFCLSSNHVRCPLYAGEDLPVAQVISTPTPVAVGGWRGWLAGLSTRDRRIYATLVGLLGLIIVAYAI SGVVLFSNPDNPATPSATSQVLQPTSDSPTLTVSPSPNAFATAAVRQTQTAEVIAQTTTVTPSVSATSSASATTQVILAS PTFVIVPPTEDVIVASATPSIPFATDLPTFEPTLSPIATTAVPTLEPTAEPTVEPTLEPTLEPTVEPTVEPTPEPIPEPT AQPTEETGGREVNQLTLFFADSTGQVLVPVSRQIAATRQSRTAAIQQLIQGARSDLRSLLPSDTQLLGLRLNNGIATANF NRIPTFGNSSLEDLGLRSIVLALTEQPEVKQVQIQVQGQNLGGLRYRPNVNPDNPQGLNGQFNTTSFLPLYFQQSSGRWV RVMRLVPSTKTEARATVNELIRGAGRYSHVVSSAIPSASQVRRLVIVDGVAQLDLSAEFSQTSNPQAAVDALVLALTSFS SVQQVQITVEGQSLSSIWGATFSNPFVRPQLNPE >Mature_513_residues TGEAHDIPVPQASFCLSSNHVRCPLYAGEDLPVAQVISTPTPVAVGGWRGWLAGLSTRDRRIYATLVGLLGLIIVAYAIS GVVLFSNPDNPATPSATSQVLQPTSDSPTLTVSPSPNAFATAAVRQTQTAEVIAQTTTVTPSVSATSSASATTQVILASP TFVIVPPTEDVIVASATPSIPFATDLPTFEPTLSPIATTAVPTLEPTAEPTVEPTLEPTLEPTVEPTVEPTPEPIPEPTA QPTEETGGREVNQLTLFFADSTGQVLVPVSRQIAATRQSRTAAIQQLIQGARSDLRSLLPSDTQLLGLRLNNGIATANFN RIPTFGNSSLEDLGLRSIVLALTEQPEVKQVQIQVQGQNLGGLRYRPNVNPDNPQGLNGQFNTTSFLPLYFQQSSGRWVR VMRLVPSTKTEARATVNELIRGAGRYSHVVSSAIPSASQVRRLVIVDGVAQLDLSAEFSQTSNPQAAVDALVLALTSFSS VQQVQITVEGQSLSSIWGATFSNPFVRPQLNPE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54476; Mature: 54345
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.2 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGEAHDIPVPQASFCLSSNHVRCPLYAGEDLPVAQVISTPTPVAVGGWRGWLAGLSTRD CCCCCCCCCCCCHHHEECCCCEEEEEECCCCCCHHHHHCCCCCEEECCHHHHHHCCCCCC RRIYATLVGLLGLIIVAYAISGVVLFSNPDNPATPSATSQVLQPTSDSPTLTVSPSPNAF CHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCH ATAAVRQTQTAEVIAQTTTVTPSVSATSSASATTQVILASPTFVIVPPTEDVIVASATPS HHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCEEEEEEECCEEEEECCCCCEEEEECCCC IPFATDLPTFEPTLSPIATTAVPTLEPTAEPTVEPTLEPTLEPTVEPTVEPTPEPIPEPT CCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AQPTEETGGREVNQLTLFFADSTGQVLVPVSRQIAATRQSRTAAIQQLIQGARSDLRSLL CCCCHHCCCCEEEEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC PSDTQLLGLRLNNGIATANFNRIPTFGNSSLEDLGLRSIVLALTEQPEVKQVQIQVQGQN CCCCEEEEEEECCCEEECCCCCCCCCCCCCHHHHHHHHEEHHHCCCCCCEEEEEEEECCC LGGLRYRPNVNPDNPQGLNGQFNTTSFLPLYFQQSSGRWVRVMRLVPSTKTEARATVNEL CCCEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHH IRGAGRYSHVVSSAIPSASQVRRLVIVDGVAQLDLSAEFSQTSNPQAAVDALVLALTSFS HHCCCHHHHHHHHHCCCHHHCEEEEEECCHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCC SVQQVQITVEGQSLSSIWGATFSNPFVRPQLNPE CEEEEEEEEECCCHHHHHCHHCCCCCCCCCCCCC >Mature Secondary Structure TGEAHDIPVPQASFCLSSNHVRCPLYAGEDLPVAQVISTPTPVAVGGWRGWLAGLSTRD CCCCCCCCCCCHHHEECCCCEEEEEECCCCCCHHHHHCCCCCEEECCHHHHHHCCCCCC RRIYATLVGLLGLIIVAYAISGVVLFSNPDNPATPSATSQVLQPTSDSPTLTVSPSPNAF CHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCH ATAAVRQTQTAEVIAQTTTVTPSVSATSSASATTQVILASPTFVIVPPTEDVIVASATPS HHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCEEEEEEECCEEEEECCCCCEEEEECCCC IPFATDLPTFEPTLSPIATTAVPTLEPTAEPTVEPTLEPTLEPTVEPTVEPTPEPIPEPT CCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AQPTEETGGREVNQLTLFFADSTGQVLVPVSRQIAATRQSRTAAIQQLIQGARSDLRSLL CCCCHHCCCCEEEEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC PSDTQLLGLRLNNGIATANFNRIPTFGNSSLEDLGLRSIVLALTEQPEVKQVQIQVQGQN CCCCEEEEEEECCCEEECCCCCCCCCCCCCHHHHHHHHEEHHHCCCCCCEEEEEEEECCC LGGLRYRPNVNPDNPQGLNGQFNTTSFLPLYFQQSSGRWVRVMRLVPSTKTEARATVNEL CCCEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHH IRGAGRYSHVVSSAIPSASQVRRLVIVDGVAQLDLSAEFSQTSNPQAAVDALVLALTSFS HHCCCHHHHHHHHHCCCHHHCEEEEEECCHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCC SVQQVQITVEGQSLSSIWGATFSNPFVRPQLNPE CEEEEEEEEECCCHHHHHCHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA