Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
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Accession | NC_009972 |
Length | 6,346,587 |
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The map label for this gene is 159899710
Identifier: 159899710
GI number: 159899710
Start: 4039183
End: 4039959
Strand: Reverse
Name: 159899710
Synonym: Haur_3192
Alternate gene names: NA
Gene position: 4039959-4039183 (Counterclockwise)
Preceding gene: 159899712
Following gene: 159899709
Centisome position: 63.66
GC content: 52.9
Gene sequence:
>777_bases ATGGCTTTTCGCTCGTTCTGGGGGCGGCGCTGGCATGCCTGGACACCCAATCAGGCCGAAATTCAGCCGATTGAGGCTGG CGTGCGGCTTGCCCTCCATCAGCATGATCGCATGGTTTATAGTGATGCGCAATTGGATGATTATGTTGAAAACGGCTTGA GCTGGTATGCTCCAGTTCGTTTGCAACTCGAAGCGCGGTTTTTGGGCGAGCCTGAGGATTTTGTGGGTACGGCAGGCTTT GGCTGGTGGAATGATCCGGCTGGCACGGGCTTGCGGCGTTTGCGACTACCCCAAGCCTTGTGGTTTTTCTATGCGGGTGC TGCTAGCCAACTTGAATTAACCGCCAATGGCGCACATAACGGTTGGTTGGCGATGAGCTTTGTGCCGCGCTTGGGCTGGT GTTTGGGCTTGTTGCCACTCGCTCCGTTGGCCTTGGTGCTGAGCCAAAACACGTGGTTACGCCAACGCTGTTGCTTGCCA TTGTTGCAACTGGCTTTGGGCGTGCGCAGCCAGCCAATCAAACTTCGCTGGAATACGTGGCAGCAGTATCAAATCGACTG GTATGCTGATCGGGTGGAATTTTGGCTTGATCAGCAATTAGTGCTCCAAATCGCCAGCGTGCCAACCAGCGATTTGGGTT TGATTCTATGGCTCGATAACCAATATGCCCAAGTTTCGCCCCGTGGAATTGTACGTGGTGGTATACTTGCTCATCAAAAT CAAGCCTTAGAAATTCGTCATTTAACGATTAGCGACCTAACAACACCTGCACTCTAG
Upstream 100 bases:
>100_bases GTTGTTGGTGATCGAGGTTTTTGATCCAACGGGCGGCCCGCGTGCAAAAATCGCAGGTTCCATCAAAAATTAACAATGCT TGCGACATAGGAGTCTCCTA
Downstream 100 bases:
>100_bases TATGCTTGACAGCCTCAGGTGGACTTTTACAATAGCCAGATATTGTTGTTACACCTGGAGGAACCACAATGCGGTCTTTT CGATGGAGTTTACTAGCATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 258; Mature: 257
Protein sequence:
>258_residues MAFRSFWGRRWHAWTPNQAEIQPIEAGVRLALHQHDRMVYSDAQLDDYVENGLSWYAPVRLQLEARFLGEPEDFVGTAGF GWWNDPAGTGLRRLRLPQALWFFYAGAASQLELTANGAHNGWLAMSFVPRLGWCLGLLPLAPLALVLSQNTWLRQRCCLP LLQLALGVRSQPIKLRWNTWQQYQIDWYADRVEFWLDQQLVLQIASVPTSDLGLILWLDNQYAQVSPRGIVRGGILAHQN QALEIRHLTISDLTTPAL
Sequences:
>Translated_258_residues MAFRSFWGRRWHAWTPNQAEIQPIEAGVRLALHQHDRMVYSDAQLDDYVENGLSWYAPVRLQLEARFLGEPEDFVGTAGF GWWNDPAGTGLRRLRLPQALWFFYAGAASQLELTANGAHNGWLAMSFVPRLGWCLGLLPLAPLALVLSQNTWLRQRCCLP LLQLALGVRSQPIKLRWNTWQQYQIDWYADRVEFWLDQQLVLQIASVPTSDLGLILWLDNQYAQVSPRGIVRGGILAHQN QALEIRHLTISDLTTPAL >Mature_257_residues AFRSFWGRRWHAWTPNQAEIQPIEAGVRLALHQHDRMVYSDAQLDDYVENGLSWYAPVRLQLEARFLGEPEDFVGTAGFG WWNDPAGTGLRRLRLPQALWFFYAGAASQLELTANGAHNGWLAMSFVPRLGWCLGLLPLAPLALVLSQNTWLRQRCCLPL LQLALGVRSQPIKLRWNTWQQYQIDWYADRVEFWLDQQLVLQIASVPTSDLGLILWLDNQYAQVSPRGIVRGGILAHQNQ ALEIRHLTISDLTTPAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29481; Mature: 29350
Theoretical pI: Translated: 7.13; Mature: 7.13
Prosite motif: PS00539 PYROKININ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFRSFWGRRWHAWTPNQAEIQPIEAGVRLALHQHDRMVYSDAQLDDYVENGLSWYAPVR CCCHHHHCCCCCCCCCCCCCEEEHHHHHEEEEECCCCEEECCCHHHHHHHCCCCEEEEEE LQLEARFLGEPEDFVGTAGFGWWNDPAGTGLRRLRLPQALWFFYAGAASQLELTANGAHN EEEEEEECCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC GWLAMSFVPRLGWCLGLLPLAPLALVLSQNTWLRQRCCLPLLQLALGVRSQPIKLRWNTW CEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCC QQYQIDWYADRVEFWLDQQLVLQIASVPTSDLGLILWLDNQYAQVSPRGIVRGGILAHQN EEEEEEEEHHHHHHHHCHHHHHHHHCCCCCCCEEEEEECCCEEECCCCCEEECCEEECCC QALEIRHLTISDLTTPAL CEEEEEEEEECCCCCCCC >Mature Secondary Structure AFRSFWGRRWHAWTPNQAEIQPIEAGVRLALHQHDRMVYSDAQLDDYVENGLSWYAPVR CCHHHHCCCCCCCCCCCCCEEEHHHHHEEEEECCCCEEECCCHHHHHHHCCCCEEEEEE LQLEARFLGEPEDFVGTAGFGWWNDPAGTGLRRLRLPQALWFFYAGAASQLELTANGAHN EEEEEEECCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC GWLAMSFVPRLGWCLGLLPLAPLALVLSQNTWLRQRCCLPLLQLALGVRSQPIKLRWNTW CEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCC QQYQIDWYADRVEFWLDQQLVLQIASVPTSDLGLILWLDNQYAQVSPRGIVRGGILAHQN EEEEEEEEHHHHHHHHCHHHHHHHHCCCCCCCEEEEEECCCEEECCCCCEEECCEEECCC QALEIRHLTISDLTTPAL CEEEEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA