Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
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Accession | NC_009972 |
Length | 6,346,587 |
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The map label for this gene is 159899590
Identifier: 159899590
GI number: 159899590
Start: 3877924
End: 3879168
Strand: Direct
Name: 159899590
Synonym: Haur_3071
Alternate gene names: NA
Gene position: 3877924-3879168 (Clockwise)
Preceding gene: 159899588
Following gene: 159899591
Centisome position: 61.1
GC content: 66.99
Gene sequence:
>1245_bases ATGGGTTCACACAACGACCTCGGGTTGGTATACTGGGTGGTGACGAAACCAAACCCATCCCAAAACCGAGGTCGTATGCC GAGTATACCAGCCCTTGCCCACTGGATCAACACCATCCTGCGCACCGCCGTGCCCACCCTCTCGCCCTGGACTGCCCGTC GGCTCACCGATTGGCTCGTCAGCATCCTGCTCATGCCGTCCATCACCACGCGCGTCGTGGCCTGGGGCTGTGCCCTTGGA CTGTCCACCGCTGCCCACGCCGCCAGTCACGAACGCCGACTGCGCCGCACCTATCGGGATTCCCAGCTGTCGTGGTCGCT CCATCGCGCCATCCTCGCCACCACCCTCCACATCGCACCCACTGAATCCGTCACCGTTATCATCGATGAAACCACCCACA CCGACCGCTGGACCCTGCTCACCGCCGCCCTCTGGTATCACGGTCGCGCCATTCCGCTTGCCTGGGTGCTCCATCCCGGC TATACCCGCCGCGCCACCGCCTTCTGGACCGATGTTGCCACCCTGCTGGAGCGCGTGCAGCAGGTGCTGCCCAATGCCAT GTCCGTCGTCGTCGTGGCCGACCGTGCTTTTGGCTGCCCCGCCTTCACCGATCAGGTCGCGGCCTACGGCTGGGGCTGGG TCGTGCGCGTCCAAGGCCATACCCGCATCCAACTGCGGGGGCACACCGAAACCATGATCCGCACGCTGGTCACGCGAGGC CATCGCGTGGTGCGGCGGGGCCATGCCTTCAAGAAGGCGGGCTGGCGAACGGTGACAGTGGTGGCCGCATGGGAGGCGAC GTGTCACGAGCCGTTACTGCTGGTGAGCAATCTGGAGGGCATTGGGGCGATTCGGCAGGCGTATGGGCGGCGCTCTGCGA TTGAGGCCCTGTTTCGCGATTGGAAAACGGCGGGCTGGCAATGGGAGGCGAGCCAGTCGCGGAGCCAGACGACGCAGGAG GCCTTGGTGCTGGGCATGGCGATCGCGACGGTGCTGGTGCTGCTGGTCGGGACGGCGGAGGCGCAGGCGGTGCTGGCCGA ACGCGGGGATCGCCCCAGCCCGCGCCGCCCATGGGCGGCACGAGAAAGTCTGTTTCGGTTGGGGCGGTATGGGGTGCTGC GCTGGCTGTGGACGGGAACGCAGCCAGCGCTGGGAGCGCGACTATCGTTGGCGGGAACGGCGCTGCACGAACGGTGGGCC ACGACGGTGACACGGGGTGGTCGGCTCGGGACGGCCATCCCCTAA
Upstream 100 bases:
>100_bases TGAAGGGGCGAGGGAGCAGGGGTCAGAGGTAGGTTTAGCGTGCCCTCACCCCCGACCCCTCTCCCACTGCGGCGTTTAAG GGCGGACAGGGACGCACACC
Downstream 100 bases:
>100_bases CACTGATGAATACCCATTCCCCAACCTGTCCGCCCTTAAACACTGCGGCGGGAGAGGGGAGGTTCCCCCTCGCCTCGCAT GCGGGCTAGGGGGTGAGGGA
Product: transposase IS4 family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 414; Mature: 413
Protein sequence:
>414_residues MGSHNDLGLVYWVVTKPNPSQNRGRMPSIPALAHWINTILRTAVPTLSPWTARRLTDWLVSILLMPSITTRVVAWGCALG LSTAAHAASHERRLRRTYRDSQLSWSLHRAILATTLHIAPTESVTVIIDETTHTDRWTLLTAALWYHGRAIPLAWVLHPG YTRRATAFWTDVATLLERVQQVLPNAMSVVVVADRAFGCPAFTDQVAAYGWGWVVRVQGHTRIQLRGHTETMIRTLVTRG HRVVRRGHAFKKAGWRTVTVVAAWEATCHEPLLLVSNLEGIGAIRQAYGRRSAIEALFRDWKTAGWQWEASQSRSQTTQE ALVLGMAIATVLVLLVGTAEAQAVLAERGDRPSPRRPWAARESLFRLGRYGVLRWLWTGTQPALGARLSLAGTALHERWA TTVTRGGRLGTAIP
Sequences:
>Translated_414_residues MGSHNDLGLVYWVVTKPNPSQNRGRMPSIPALAHWINTILRTAVPTLSPWTARRLTDWLVSILLMPSITTRVVAWGCALG LSTAAHAASHERRLRRTYRDSQLSWSLHRAILATTLHIAPTESVTVIIDETTHTDRWTLLTAALWYHGRAIPLAWVLHPG YTRRATAFWTDVATLLERVQQVLPNAMSVVVVADRAFGCPAFTDQVAAYGWGWVVRVQGHTRIQLRGHTETMIRTLVTRG HRVVRRGHAFKKAGWRTVTVVAAWEATCHEPLLLVSNLEGIGAIRQAYGRRSAIEALFRDWKTAGWQWEASQSRSQTTQE ALVLGMAIATVLVLLVGTAEAQAVLAERGDRPSPRRPWAARESLFRLGRYGVLRWLWTGTQPALGARLSLAGTALHERWA TTVTRGGRLGTAIP >Mature_413_residues GSHNDLGLVYWVVTKPNPSQNRGRMPSIPALAHWINTILRTAVPTLSPWTARRLTDWLVSILLMPSITTRVVAWGCALGL STAAHAASHERRLRRTYRDSQLSWSLHRAILATTLHIAPTESVTVIIDETTHTDRWTLLTAALWYHGRAIPLAWVLHPGY TRRATAFWTDVATLLERVQQVLPNAMSVVVVADRAFGCPAFTDQVAAYGWGWVVRVQGHTRIQLRGHTETMIRTLVTRGH RVVRRGHAFKKAGWRTVTVVAAWEATCHEPLLLVSNLEGIGAIRQAYGRRSAIEALFRDWKTAGWQWEASQSRSQTTQEA LVLGMAIATVLVLLVGTAEAQAVLAERGDRPSPRRPWAARESLFRLGRYGVLRWLWTGTQPALGARLSLAGTALHERWAT TVTRGGRLGTAIP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46091; Mature: 45960
Theoretical pI: Translated: 11.87; Mature: 11.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSHNDLGLVYWVVTKPNPSQNRGRMPSIPALAHWINTILRTAVPTLSPWTARRLTDWLV CCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH SILLMPSITTRVVAWGCALGLSTAAHAASHERRLRRTYRDSQLSWSLHRAILATTLHIAP HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECC TESVTVIIDETTHTDRWTLLTAALWYHGRAIPLAWVLHPGYTRRATAFWTDVATLLERVQ CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH QVLPNAMSVVVVADRAFGCPAFTDQVAAYGWGWVVRVQGHTRIQLRGHTETMIRTLVTRG HHCCCCEEEEEEECCCCCCCCHHHHHHHCCCEEEEEECCCEEEEECCCHHHHHHHHHHHH HRVVRRGHAFKKAGWRTVTVVAAWEATCHEPLLLVSNLEGIGAIRQAYGRRSAIEALFRD HHHHHHCCHHHHCCCEEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHCCHHHHHHHHHH WKTAGWQWEASQSRSQTTQEALVLGMAIATVLVLLVGTAEAQAVLAERGDRPSPRRPWAA HHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHH RESLFRLGRYGVLRWLWTGTQPALGARLSLAGTALHERWATTVTRGGRLGTAIP HHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure GSHNDLGLVYWVVTKPNPSQNRGRMPSIPALAHWINTILRTAVPTLSPWTARRLTDWLV CCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH SILLMPSITTRVVAWGCALGLSTAAHAASHERRLRRTYRDSQLSWSLHRAILATTLHIAP HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECC TESVTVIIDETTHTDRWTLLTAALWYHGRAIPLAWVLHPGYTRRATAFWTDVATLLERVQ CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH QVLPNAMSVVVVADRAFGCPAFTDQVAAYGWGWVVRVQGHTRIQLRGHTETMIRTLVTRG HHCCCCEEEEEEECCCCCCCCHHHHHHHCCCEEEEEECCCEEEEECCCHHHHHHHHHHHH HRVVRRGHAFKKAGWRTVTVVAAWEATCHEPLLLVSNLEGIGAIRQAYGRRSAIEALFRD HHHHHHCCHHHHCCCEEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHCCHHHHHHHHHH WKTAGWQWEASQSRSQTTQEALVLGMAIATVLVLLVGTAEAQAVLAERGDRPSPRRPWAA HHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHH RESLFRLGRYGVLRWLWTGTQPALGARLSLAGTALHERWATTVTRGGRLGTAIP HHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA