Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
---|---|
Accession | NC_009972 |
Length | 6,346,587 |
Click here to switch to the map view.
The map label for this gene is 159899398
Identifier: 159899398
GI number: 159899398
Start: 3651443
End: 3652303
Strand: Direct
Name: 159899398
Synonym: Haur_2879
Alternate gene names: NA
Gene position: 3651443-3652303 (Clockwise)
Preceding gene: 159899397
Following gene: 159899400
Centisome position: 57.53
GC content: 50.41
Gene sequence:
>861_bases ATGCAGCGATTTTTGCAGGCGTTTCGGGTGGGCTTTTGGTTGGGCTGGAAAACCGAAAGTAACTGGACGAATCCGCTTTT TTATATTTTGTGGTCGTTGTTAGTGCCAATGTCGAATGGCTTGATTATGACTATGATGCTGCGGGTGTTGCAGCGCACTG GTAATGTGAATGGGGCAGATCTATTGCCCTACGTGTTTATCGGCACGGTGGTTTATTCGATTGTGGCCTTGTTGCTGGAT AGTATGGCGTGGGCCGTGCTCGAAGATCGCGAACGAATGGGCATGCTCAAATATATTGCGATCACGCCATCGTCGATGTA TGGCTATTTATGGGGCCGTGGCTTTGCCAAAGTTTCAGTCAATTTCCTGGCAGTGCCGCTCACCTTGACCTTTGGCGCGT TGGTGCTCGATATTCCAATTCAGCTAAGTACGATCGATTGGCCGTTGTTGCTGGCGGTGGTGGTGCTTGGTTTATTGATT GTCACCTTTGCAGCCCAGATTTTGGCGGGCGTGACCTTGATGATTGCCCGCCACGCTGGCTTTGTCGGTCAAGCAGTTTC CGGTGCACTATACCTTTTCACTGGAGCCTTGTTTCCAATTACCGTGCTGCCAATTTGGATGCAAACGATTGCTCGCGCCG TACCATTGACCTATTGGCTCGAGGGCATGCGCCGTGCTTTATGGGTCGATGCCCGCAATCCAGCCTATAAAACCGGGCTT GAACAATTGAGCACCAGCAATCTACTATTAATTTTGGTTGGCGCAGCCGTGGCAATGGCAGTAATTTCGATTCCATTGCA GCGCCGCGCCGAACATCGGGCCAAAGAAAAAGGCTTGTTAGATATGAACACGGCTTACTAA
Upstream 100 bases:
>100_bases ACCCAAAAAGAAATTTCCAGAATTAACATTAATTCTAGGGTTTGCTCATAAGGGATTTTGCCTTTTGATTTTTGCCTTCT ACCTTTACAAAGGGGTTTCT
Downstream 100 bases:
>100_bases GGCGTGAACAGCACTTTGCCACCAGTCATATTGTTTTGATACAGTTCAAGGGCGTTTTGGGCTTCAGCTAGCTTAAAACG CCCTTGAATTGTTGAAGCCA
Product: ABC-2 type transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 286; Mature: 286
Protein sequence:
>286_residues MQRFLQAFRVGFWLGWKTESNWTNPLFYILWSLLVPMSNGLIMTMMLRVLQRTGNVNGADLLPYVFIGTVVYSIVALLLD SMAWAVLEDRERMGMLKYIAITPSSMYGYLWGRGFAKVSVNFLAVPLTLTFGALVLDIPIQLSTIDWPLLLAVVVLGLLI VTFAAQILAGVTLMIARHAGFVGQAVSGALYLFTGALFPITVLPIWMQTIARAVPLTYWLEGMRRALWVDARNPAYKTGL EQLSTSNLLLILVGAAVAMAVISIPLQRRAEHRAKEKGLLDMNTAY
Sequences:
>Translated_286_residues MQRFLQAFRVGFWLGWKTESNWTNPLFYILWSLLVPMSNGLIMTMMLRVLQRTGNVNGADLLPYVFIGTVVYSIVALLLD SMAWAVLEDRERMGMLKYIAITPSSMYGYLWGRGFAKVSVNFLAVPLTLTFGALVLDIPIQLSTIDWPLLLAVVVLGLLI VTFAAQILAGVTLMIARHAGFVGQAVSGALYLFTGALFPITVLPIWMQTIARAVPLTYWLEGMRRALWVDARNPAYKTGL EQLSTSNLLLILVGAAVAMAVISIPLQRRAEHRAKEKGLLDMNTAY >Mature_286_residues MQRFLQAFRVGFWLGWKTESNWTNPLFYILWSLLVPMSNGLIMTMMLRVLQRTGNVNGADLLPYVFIGTVVYSIVALLLD SMAWAVLEDRERMGMLKYIAITPSSMYGYLWGRGFAKVSVNFLAVPLTLTFGALVLDIPIQLSTIDWPLLLAVVVLGLLI VTFAAQILAGVTLMIARHAGFVGQAVSGALYLFTGALFPITVLPIWMQTIARAVPLTYWLEGMRRALWVDARNPAYKTGL EQLSTSNLLLILVGAAVAMAVISIPLQRRAEHRAKEKGLLDMNTAY
Specific function: Unknown
COG id: COG0842
COG function: function code V; ABC-type multidrug transport system, permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31771; Mature: 31771
Theoretical pI: Translated: 10.10; Mature: 10.10
Prosite motif: PS51012 ABC_TM2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRFLQAFRVGFWLGWKTESNWTNPLFYILWSLLVPMSNGLIMTMMLRVLQRTGNVNGAD CHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHH LLPYVFIGTVVYSIVALLLDSMAWAVLEDRERMGMLKYIAITPSSMYGYLWGRGFAKVSV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEEEECCCHHHHHHHCCCHHHEEH NFLAVPLTLTFGALVLDIPIQLSTIDWPLLLAVVVLGLLIVTFAAQILAGVTLMIARHAG HHEEHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC FVGQAVSGALYLFTGALFPITVLPIWMQTIARAVPLTYWLEGMRRALWVDARNPAYKTGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHH EQLSTSNLLLILVGAAVAMAVISIPLQRRAEHRAKEKGLLDMNTAY HHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MQRFLQAFRVGFWLGWKTESNWTNPLFYILWSLLVPMSNGLIMTMMLRVLQRTGNVNGAD CHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHH LLPYVFIGTVVYSIVALLLDSMAWAVLEDRERMGMLKYIAITPSSMYGYLWGRGFAKVSV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEEEECCCHHHHHHHCCCHHHEEH NFLAVPLTLTFGALVLDIPIQLSTIDWPLLLAVVVLGLLIVTFAAQILAGVTLMIARHAG HHEEHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC FVGQAVSGALYLFTGALFPITVLPIWMQTIARAVPLTYWLEGMRRALWVDARNPAYKTGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHH EQLSTSNLLLILVGAAVAMAVISIPLQRRAEHRAKEKGLLDMNTAY HHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA