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The map label for this gene is deoB

Identifier: 159899366

GI number: 159899366

Start: 3611454

End: 3612629

Strand: Direct

Name: deoB

Synonym: Haur_2847

Alternate gene names: 159899366

Gene position: 3611454-3612629 (Clockwise)

Preceding gene: 159899362

Following gene: 159899367

Centisome position: 56.9

GC content: 49.83

Gene sequence:

>1176_bases
ATGGATATTAAACGGGTAACGGTGATTGTTTTGGATGGTGTGGGAATTGGCGAAGCACCTGATGCCGACGAATATGGCGA
TGTAGGCAGCCACTCGTTGGCCAACACAGCCGCAGCTATCAATGGGCTTGATCTGCCCAATATGGCAGCACTAGGGCTTG
GTTGCATTAGCGAAATGCAGGGTGTCGCCTGCCCTGAATCTTTTAGTGGCAGCTATGGCAAAATGCAACCGCTATCAAAA
GGCAAAGATACAGTTTCAGGTCACTGGGAGATGATGGGCATCGTCTTGCCAACACCATTTCCGGTGTATCCCGATGGCTT
TCCGGCAGCAGTAATTGAGCCATTTAAACAAAAAATTGGGCGTGGCGTGCTGGGCAATAAATCAGCCTCAGGCACTGATA
TTCTTGAAGAATTAGGCATGGAACACATTCGCACGGGTGATCCAATTGTCTATACCTCAGCTGATAGTGTTTTTCAAATT
GCGGCCCATGAAGACGTGATTACTCCCAAAGAGTTGTATGCAATGTGCGAAATCGCGCGTGAGATCTTGGTTGGAGAGCA
TGCGGTTGGGCGGGTGATTGCGCGGCCATTTATTGGCGATAGTCCCGAAACCTTTAAGCGCACCATTCGCCGCCACGATT
ATGCCCTGACCCCAGAAACCCCCACCATTTTGGATAAAGTAGTAGCGGCAGGCAAACAAGTCTATTCAGTTGGCAAAATC
GATGATATTTTTGGCAATCGCGGCATCAGCGTTTCCAACCATACCGTTGATAATGCGGCCAGTTTAGAGGCAGTGCTTGA
ATTTCTCGATGTGGATTTTGAAGGGCTGTTGTTTGCCAACTTCATCGAGTTTGATATGATCTATGGCCATCGCAATGATC
CGGTTGGCTATGCCAACGCCTTGAAGGCAGTTGATCAGCGTTTGCCTGAGCTACAAGCCAAATTACGGGCGGGCGATCTG
GTGGTAATTACCGCCGATCATGGCGTTGACCCAACCACCCCTGGCTCGAACCACAGCCGTGAATATGTTCCGCTATTGGT
TTTTGGCCCCGAAGTGCGTAGCGGAGTCAATTTGGGAACTCGTCAGACCCTGAGCGACTTGGCGGCAACGATTGCTGAGA
TTTTCGGGCTAGAGCAACCACTGCATGGCACAAGTTTCCTCAGTGAACTACAATAA

Upstream 100 bases:

>100_bases
GTTTGGCTATCTCGGATATACTACTATTCTCTGCAAAAACGCTGCTTCTGAGCGAGCGCTGAAGGTTGTATGATCAGTAC
GTTTTACAAGGAGTCTTAGG

Downstream 100 bases:

>100_bases
TTTAGCATCGATCAAATTGGTCAAATGCAAAAACCTATCTCGCACGAGGTAGGTTTTTTGCGACAACTGGCGTGATACCG
TATGACTTCAGATATCTCTA

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MDIKRVTVIVLDGVGIGEAPDADEYGDVGSHSLANTAAAINGLDLPNMAALGLGCISEMQGVACPESFSGSYGKMQPLSK
GKDTVSGHWEMMGIVLPTPFPVYPDGFPAAVIEPFKQKIGRGVLGNKSASGTDILEELGMEHIRTGDPIVYTSADSVFQI
AAHEDVITPKELYAMCEIAREILVGEHAVGRVIARPFIGDSPETFKRTIRRHDYALTPETPTILDKVVAAGKQVYSVGKI
DDIFGNRGISVSNHTVDNAASLEAVLEFLDVDFEGLLFANFIEFDMIYGHRNDPVGYANALKAVDQRLPELQAKLRAGDL
VVITADHGVDPTTPGSNHSREYVPLLVFGPEVRSGVNLGTRQTLSDLAATIAEIFGLEQPLHGTSFLSELQ

Sequences:

>Translated_391_residues
MDIKRVTVIVLDGVGIGEAPDADEYGDVGSHSLANTAAAINGLDLPNMAALGLGCISEMQGVACPESFSGSYGKMQPLSK
GKDTVSGHWEMMGIVLPTPFPVYPDGFPAAVIEPFKQKIGRGVLGNKSASGTDILEELGMEHIRTGDPIVYTSADSVFQI
AAHEDVITPKELYAMCEIAREILVGEHAVGRVIARPFIGDSPETFKRTIRRHDYALTPETPTILDKVVAAGKQVYSVGKI
DDIFGNRGISVSNHTVDNAASLEAVLEFLDVDFEGLLFANFIEFDMIYGHRNDPVGYANALKAVDQRLPELQAKLRAGDL
VVITADHGVDPTTPGSNHSREYVPLLVFGPEVRSGVNLGTRQTLSDLAATIAEIFGLEQPLHGTSFLSELQ
>Mature_391_residues
MDIKRVTVIVLDGVGIGEAPDADEYGDVGSHSLANTAAAINGLDLPNMAALGLGCISEMQGVACPESFSGSYGKMQPLSK
GKDTVSGHWEMMGIVLPTPFPVYPDGFPAAVIEPFKQKIGRGVLGNKSASGTDILEELGMEHIRTGDPIVYTSADSVFQI
AAHEDVITPKELYAMCEIAREILVGEHAVGRVIARPFIGDSPETFKRTIRRHDYALTPETPTILDKVVAAGKQVYSVGKI
DDIFGNRGISVSNHTVDNAASLEAVLEFLDVDFEGLLFANFIEFDMIYGHRNDPVGYANALKAVDQRLPELQAKLRAGDL
VVITADHGVDPTTPGSNHSREYVPLLVFGPEVRSGVNLGTRQTLSDLAATIAEIFGLEQPLHGTSFLSELQ

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family

Homologues:

Organism=Escherichia coli, GI1790843, Length=408, Percent_Identity=42.6470588235294, Blast_Score=307, Evalue=7e-85,
Organism=Escherichia coli, GI1789781, Length=423, Percent_Identity=28.6052009456265, Blast_Score=111, Evalue=7e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOB_HERA2 (A9B2N4)

Other databases:

- EMBL:   CP000875
- RefSeq:   YP_001545613.1
- ProteinModelPortal:   A9B2N4
- SMR:   A9B2N4
- GeneID:   5736884
- GenomeReviews:   CP000875_GR
- KEGG:   hau:Haur_2847
- HOGENOM:   HBG644230
- OMA:   CHASGTE
- BioCyc:   HAUR316274:HAUR_2847-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00740
- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124
- Gene3D:   G3DSA:3.40.720.10
- PIRSF:   PIRSF001491
- TIGRFAMs:   TIGR01696

Pfam domain/function: PF01676 Metalloenzyme; SSF53649 Alkaline_phosphatase_core

EC number: =5.4.2.7

Molecular weight: Translated: 41944; Mature: 41944

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIKRVTVIVLDGVGIGEAPDADEYGDVGSHSLANTAAAINGLDLPNMAALGLGCISEMQ
CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
GVACPESFSGSYGKMQPLSKGKDTVSGHWEMMGIVLPTPFPVYPDGFPAAVIEPFKQKIG
CCCCCHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHC
RGVLGNKSASGTDILEELGMEHIRTGDPIVYTSADSVFQIAAHEDVITPKELYAMCEIAR
CCCCCCCCCCHHHHHHHHCHHHHCCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHH
EILVGEHAVGRVIARPFIGDSPETFKRTIRRHDYALTPETPTILDKVVAAGKQVYSVGKI
HHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHCCCH
DDIFGNRGISVSNHTVDNAASLEAVLEFLDVDFEGLLFANFIEFDMIYGHRNDPVGYANA
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHEECCCCCCCCHHHH
LKAVDQRLPELQAKLRAGDLVVITADHGVDPTTPGSNHSREYVPLLVFGPEVRSGVNLGT
HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCHHCCCCCCH
RQTLSDLAATIAEIFGLEQPLHGTSFLSELQ
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHCC
>Mature Secondary Structure
MDIKRVTVIVLDGVGIGEAPDADEYGDVGSHSLANTAAAINGLDLPNMAALGLGCISEMQ
CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
GVACPESFSGSYGKMQPLSKGKDTVSGHWEMMGIVLPTPFPVYPDGFPAAVIEPFKQKIG
CCCCCHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHC
RGVLGNKSASGTDILEELGMEHIRTGDPIVYTSADSVFQIAAHEDVITPKELYAMCEIAR
CCCCCCCCCCHHHHHHHHCHHHHCCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHH
EILVGEHAVGRVIARPFIGDSPETFKRTIRRHDYALTPETPTILDKVVAAGKQVYSVGKI
HHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHCCCH
DDIFGNRGISVSNHTVDNAASLEAVLEFLDVDFEGLLFANFIEFDMIYGHRNDPVGYANA
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHEECCCCCCCCHHHH
LKAVDQRLPELQAKLRAGDLVVITADHGVDPTTPGSNHSREYVPLLVFGPEVRSGVNLGT
HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCHHCCCCCCH
RQTLSDLAATIAEIFGLEQPLHGTSFLSELQ
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA