| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is celB [H]
Identifier: 159899339
GI number: 159899339
Start: 3586898
End: 3588799
Strand: Direct
Name: celB [H]
Synonym: Haur_2820
Alternate gene names: 159899339
Gene position: 3586898-3588799 (Clockwise)
Preceding gene: 159899336
Following gene: 159899345
Centisome position: 56.52
GC content: 48.0
Gene sequence:
>1902_bases ATGTCGCAGAAACAACGTTCGTTTCGCACCCGCCTAGCCATGATCGGCGGGCTAGTTACCCTACTCTTGGCTGGTCAGCC CGCTACTACCAAGCCAACCGCTGCCGCCGCTATCTGCGAGGTCACTTACACAATCTCGAATCAGTGGTCTACTGGCTTCA CTGCTAATGTGAGTGTTAAGAATCTTGGGATCGGTCTCAATAATTGGCAGGTTGGCTGGACATTCGCGGGCAATCAGGCA ATTACCAATCTTTGGAATGGGGTGCTCACCCAAACTGGCGCTCAGGTCAGTGTGTCAAATCCAGCATGGGCCGCCAGTTT ACCCAGCAATGGTACTGCCAGCTTTGGTTTCCAAGCTTCGTATACTGGTAGTAATGCGATTCCAAACGCATTTACCTTGA ATGGCGTTAGTTGCAACGGCGATCAGCCAAGCCCAATGCCTACAAATACTGCTATTCCGAGCATTCCACCTGCCACCAAC ACCCCTAATCCGCCAACCAATACGCCAATTGCTACCACAACCGGAACCCCTCGCCCAACCAATACGCCAACCAGCGTCAT TCCAACGGTCACGAATACACCTCGCCCAACCAATACTCCAGTTCCAACCACGGTCAATCCAACGGCTACGAGTACCCCAA CTGGTAATAACAATAATGATGATTGGCTCCACACCAATGGCAATCAAATTGTTGATAGCGCAGGTCGCCCAGTTTGGTTA ACTGGAGTCAATTGGTTTGGCTTCAATGCAACTGAGCGGGTGTTTCATGGCTTGTGGTCGGCCAATTTGACCAGCATGAT GCAAAGCATTTCGCAACGTGGATTGAACATTATTCGCGTACCAATCTCAACTGAATTGATTTTGGAGTGGAAAGCCGGGG TTTTCAAAACACCAAATGTCAACACTTACGCCAATCCTGAATTAGAAGGCTTAACCTCGTTGCAAATATTTGATCGCTTC GTGATGCTTTCAAAGCAATTTGGCATTAAGGTGATGATCGATGTGCATAGCGCCGAAGCCGATAATTCAGGCCATTATGC GCCACTCTGGTACAAAGGTTCGTTTACCAGCGAGCAGTTTTATCAGGCTTGGGAGTGGATTACTGATCGTTACAAAAATG ACGATACGGTGATCGCAATGGATATTAAGAATGAGCCACACGGCACGGCCCACGATAATCAAACCAGCAGTCAATTTGCC AAATGGGATAACTCGACCGATATCAACAACTGGAAATACGTTTGCGAAACTGCTAGCAAACGAATTTTGGCGATTAACCC TAATGTCTTGGTGCTATGCGAAGGCAACGAGGTTTATCCAAAGGCCGGCGCAAGCTATACCTCAAGCAACAAAAATGATT ACTACTTTACCTGGTGGGGCGGAAATTTACGTGGCGTGCGTGATTATCCGGTCAATCTTGGCAGCAACCAAGATCAATTG GTCTACTCGCCACACGATTACGGCCCGTTGGTCTTCAATCAATCGTGGTTCTACCCTGGTTTTACCAAAGAAACGCTTTA CAACGATGTTTGGTATCCTAATTGGTTTTTTATCCATGAAGAAAATATTGCGCCATTGTTTATTGGCGAATGGGGTGGCT TTTTGGATGGTGGCGCAAATGAACAATGGATGAAGGCGTTGCGCGATTTGATCAAAGAGCACTATCTACACCATACCTTC TGGGTACTCAACCCCAATTCTGGCGACACTGGCGGTTTGCTCGGATACGATTGGGCCACTTGGGATGAGGCTAAATATGC CTTGCTCAAGCCAGCCTTGTGGGCAGATCGCAATGGTAAATTTGTCAGCCTCGATCATCAAATTCCGCTCGGTGGCACAG CTACTGGCACAACCATTACCCAATATTATCAACAGGGCAACCAAGCTCCAAGCAATCCCTAA
Upstream 100 bases:
>100_bases TTAGAATTGAATTGATTTGGGATGGCCTTTCTTAGGGATCGGTCTCAATCAAGATTGATCTAATCAGTTCTGCTATCATT TCAAATACGAGGGAGTATCT
Downstream 100 bases:
>100_bases TTGATCGATGAGCAACAAAACAAAAGCCTTGACAATTCAAATTGTCAAGGCTTTTCGATTTATGTCAATAAAAATCTAGC GACAACCACAGCTGCTCGCT
Product: glycoside hydrolase family protein
Products: NA
Alternate protein names: Endoglucanase; Cellobiohydrolase; Cellulase; Endo-1,4-beta-glucanase; Exoglucanase; 1,4-beta-cellobiohydrolase; Exocellobiohydrolase [H]
Number of amino acids: Translated: 633; Mature: 632
Protein sequence:
>633_residues MSQKQRSFRTRLAMIGGLVTLLLAGQPATTKPTAAAAICEVTYTISNQWSTGFTANVSVKNLGIGLNNWQVGWTFAGNQA ITNLWNGVLTQTGAQVSVSNPAWAASLPSNGTASFGFQASYTGSNAIPNAFTLNGVSCNGDQPSPMPTNTAIPSIPPATN TPNPPTNTPIATTTGTPRPTNTPTSVIPTVTNTPRPTNTPVPTTVNPTATSTPTGNNNNDDWLHTNGNQIVDSAGRPVWL TGVNWFGFNATERVFHGLWSANLTSMMQSISQRGLNIIRVPISTELILEWKAGVFKTPNVNTYANPELEGLTSLQIFDRF VMLSKQFGIKVMIDVHSAEADNSGHYAPLWYKGSFTSEQFYQAWEWITDRYKNDDTVIAMDIKNEPHGTAHDNQTSSQFA KWDNSTDINNWKYVCETASKRILAINPNVLVLCEGNEVYPKAGASYTSSNKNDYYFTWWGGNLRGVRDYPVNLGSNQDQL VYSPHDYGPLVFNQSWFYPGFTKETLYNDVWYPNWFFIHEENIAPLFIGEWGGFLDGGANEQWMKALRDLIKEHYLHHTF WVLNPNSGDTGGLLGYDWATWDEAKYALLKPALWADRNGKFVSLDHQIPLGGTATGTTITQYYQQGNQAPSNP
Sequences:
>Translated_633_residues MSQKQRSFRTRLAMIGGLVTLLLAGQPATTKPTAAAAICEVTYTISNQWSTGFTANVSVKNLGIGLNNWQVGWTFAGNQA ITNLWNGVLTQTGAQVSVSNPAWAASLPSNGTASFGFQASYTGSNAIPNAFTLNGVSCNGDQPSPMPTNTAIPSIPPATN TPNPPTNTPIATTTGTPRPTNTPTSVIPTVTNTPRPTNTPVPTTVNPTATSTPTGNNNNDDWLHTNGNQIVDSAGRPVWL TGVNWFGFNATERVFHGLWSANLTSMMQSISQRGLNIIRVPISTELILEWKAGVFKTPNVNTYANPELEGLTSLQIFDRF VMLSKQFGIKVMIDVHSAEADNSGHYAPLWYKGSFTSEQFYQAWEWITDRYKNDDTVIAMDIKNEPHGTAHDNQTSSQFA KWDNSTDINNWKYVCETASKRILAINPNVLVLCEGNEVYPKAGASYTSSNKNDYYFTWWGGNLRGVRDYPVNLGSNQDQL VYSPHDYGPLVFNQSWFYPGFTKETLYNDVWYPNWFFIHEENIAPLFIGEWGGFLDGGANEQWMKALRDLIKEHYLHHTF WVLNPNSGDTGGLLGYDWATWDEAKYALLKPALWADRNGKFVSLDHQIPLGGTATGTTITQYYQQGNQAPSNP >Mature_632_residues SQKQRSFRTRLAMIGGLVTLLLAGQPATTKPTAAAAICEVTYTISNQWSTGFTANVSVKNLGIGLNNWQVGWTFAGNQAI TNLWNGVLTQTGAQVSVSNPAWAASLPSNGTASFGFQASYTGSNAIPNAFTLNGVSCNGDQPSPMPTNTAIPSIPPATNT PNPPTNTPIATTTGTPRPTNTPTSVIPTVTNTPRPTNTPVPTTVNPTATSTPTGNNNNDDWLHTNGNQIVDSAGRPVWLT GVNWFGFNATERVFHGLWSANLTSMMQSISQRGLNIIRVPISTELILEWKAGVFKTPNVNTYANPELEGLTSLQIFDRFV MLSKQFGIKVMIDVHSAEADNSGHYAPLWYKGSFTSEQFYQAWEWITDRYKNDDTVIAMDIKNEPHGTAHDNQTSSQFAK WDNSTDINNWKYVCETASKRILAINPNVLVLCEGNEVYPKAGASYTSSNKNDYYFTWWGGNLRGVRDYPVNLGSNQDQLV YSPHDYGPLVFNQSWFYPGFTKETLYNDVWYPNWFFIHEENIAPLFIGEWGGFLDGGANEQWMKALRDLIKEHYLHHTFW VLNPNSGDTGGLLGYDWATWDEAKYALLKPALWADRNGKFVSLDHQIPLGGTATGTTITQYYQQGNQAPSNP
Specific function: This protein is made up of two domains:the N-terminal domain has exoglucanase activity while the C-terminal domain is an endoglucanase [H]
COG id: COG2730
COG function: function code G; Endoglucanase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 CBM3 (carbohydrate binding type-3) domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008965 - InterPro: IPR001956 - InterPro: IPR001000 - InterPro: IPR001547 - InterPro: IPR018087 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF00942 CBM_3; PF00150 Cellulase; PF00331 Glyco_hydro_10 [H]
EC number: =3.2.1.4; =3.2.1.91 [H]
Molecular weight: Translated: 69860; Mature: 69729
Theoretical pI: Translated: 6.09; Mature: 6.09
Prosite motif: PS00659 GLYCOSYL_HYDROL_F5
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQKQRSFRTRLAMIGGLVTLLLAGQPATTKPTAAAAICEVTYTISNQWSTGFTANVSVK CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEEEEEEEEECCCCCCCEEEEEEEE NLGIGLNNWQVGWTFAGNQAITNLWNGVLTQTGAQVSVSNPAWAASLPSNGTASFGFQAS EEECCCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCCCCEEEE YTGSNAIPNAFTLNGVSCNGDQPSPMPTNTAIPSIPPATNTPNPPTNTPIATTTGTPRPT CCCCCCCCCCEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC NTPTSVIPTVTNTPRPTNTPVPTTVNPTATSTPTGNNNNDDWLHTNGNQIVDSAGRPVWL CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEECCCCCEEEE TGVNWFGFNATERVFHGLWSANLTSMMQSISQRGLNIIRVPISTELILEWKAGVFKTPNV EECCEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCEEECCCC NTYANPELEGLTSLQIFDRFVMLSKQFGIKVMIDVHSAEADNSGHYAPLWYKGSFTSEQF CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEEEECCCCHHHH YQAWEWITDRYKNDDTVIAMDIKNEPHGTAHDNQTSSQFAKWDNSTDINNWKYVCETASK HHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHEECCCC RILAINPNVLVLCEGNEVYPKAGASYTSSNKNDYYFTWWGGNLRGVRDYPVNLGSNQDQL EEEEECCCEEEEECCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCEECCCCCCCCCCEE VYSPHDYGPLVFNQSWFYPGFTKETLYNDVWYPNWFFIHEENIAPLFIGEWGGFLDGGAN EECCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCC EQWMKALRDLIKEHYLHHTFWVLNPNSGDTGGLLGYDWATWDEAKYALLKPALWADRNGK HHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCEEECCCCCCCCCCCEEECCCCEECCCCC FVSLDHQIPLGGTATGTTITQYYQQGNQAPSNP EEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC >Mature Secondary Structure SQKQRSFRTRLAMIGGLVTLLLAGQPATTKPTAAAAICEVTYTISNQWSTGFTANVSVK CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEEEEEEEEECCCCCCCEEEEEEEE NLGIGLNNWQVGWTFAGNQAITNLWNGVLTQTGAQVSVSNPAWAASLPSNGTASFGFQAS EEECCCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCCCCEEEE YTGSNAIPNAFTLNGVSCNGDQPSPMPTNTAIPSIPPATNTPNPPTNTPIATTTGTPRPT CCCCCCCCCCEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC NTPTSVIPTVTNTPRPTNTPVPTTVNPTATSTPTGNNNNDDWLHTNGNQIVDSAGRPVWL CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEECCCCCEEEE TGVNWFGFNATERVFHGLWSANLTSMMQSISQRGLNIIRVPISTELILEWKAGVFKTPNV EECCEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCEEECCCC NTYANPELEGLTSLQIFDRFVMLSKQFGIKVMIDVHSAEADNSGHYAPLWYKGSFTSEQF CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEEEECCCCHHHH YQAWEWITDRYKNDDTVIAMDIKNEPHGTAHDNQTSSQFAKWDNSTDINNWKYVCETASK HHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHEECCCC RILAINPNVLVLCEGNEVYPKAGASYTSSNKNDYYFTWWGGNLRGVRDYPVNLGSNQDQL EEEEECCCEEEEECCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCEECCCCCCCCCCEE VYSPHDYGPLVFNQSWFYPGFTKETLYNDVWYPNWFFIHEENIAPLFIGEWGGFLDGGAN EECCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCC EQWMKALRDLIKEHYLHHTFWVLNPNSGDTGGLLGYDWATWDEAKYALLKPALWADRNGK HHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCEEECCCCCCCCCCCEEECCCCEECCCCC FVSLDHQIPLGGTATGTTITQYYQQGNQAPSNP EEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2789517 [H]