| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is ccmF [H]
Identifier: 159899241
GI number: 159899241
Start: 3475855
End: 3478200
Strand: Direct
Name: ccmF [H]
Synonym: Haur_2722
Alternate gene names: 159899241
Gene position: 3475855-3478200 (Clockwise)
Preceding gene: 159899240
Following gene: 159899242
Centisome position: 54.77
GC content: 52.77
Gene sequence:
>2346_bases ATGAATTTGTTTATGTTTGGCACGTTGCTGCTGGTTGTGGCGTTAGTTGCCGCTTTCACCGCCACCACTTCATATACATT GCTAATTGCAGGCCAGCGCACCGCCTTGAGTTGGGGTCGTTGGAGTGTGCGGATCGCCGCAGTTTCGATCCTTGTGGCTT CGCTGTTGCTCTTGGCGTTGTTCTATTTTGGGCGCTATGAGTTCGATTATGTCTACAACTACTCATCGAACGATTTAGAG CTACGCTACAAACTTTCGGCGCTCTGGGCTGGCCAACAAGGCTCATTTATGATTTGGGCCTTGGTTGGCTTGTTGGCAGC GCCGTTGTTGCTACGTCGCTCACGCGAGTTTGAGCCGTTTGTGCTCATGCCCTTGATGGCGGTGCAAGTGGCAATTATCA GCTTTATGTTGATCAATAATCCATTTGCCTTGCGCTTCGATGTTGCCAAACAAATCATCTATGCTGAAGATGGGCGTGGC TTAAACGAGCTGCTGCACAACCCATGGATGGTGATTCACCCGCCGATTTTGTTCTTGGGCTACGGCTTGTTGGCAATTCC CTTTGCCTATGCCATCGCTGGGCTGTGGCGGCGTGATTACGATGGTTGGGTCAAAGCAGCCTTGCCTTGGACAATTACCG CCTGGGTTATCTTAACGACTGCATTAACCCTTGGTGGTTATTGGGCCTACGAAACCCTAGGCTGGGGTGGCTATTGGGCA TGGGACCCAGTGGAAAACTCATCGCTTTTGCCATGGCTGACTGTGACGGCATTGCTCCACGGGATGTTGGTGCAACGTGC CCATGGCGGTTTGCGACGGGCCAATTTTAGCCTAGCAATTGTCACCTATGGCTTGGTCATGTATGCTTCATTCCTCACGC GTTCGGGGGTTTTGGGCGATTTTTCGGTGCACTCATTTACCGAAGATGGCCTTGGCACGACCATGGCAGCAGTTTTGGTG GTTGGTTTAGTGGTTTCACTGGGCATCTTCTTCCAGCGCTGGCGTGATGTGCCAATCAACAAGCTCTCGGAAAGCCTGTT TTCGCGTGATAGTTTGTTTGTGCTCGGCATGTTTTGTTTGGTGATTATCACGCTGATTGTGGGCCTTGGCACGTCAATGC CGCTGTTTTCCAAAACGCCAATTTTGCGTGATGGCCTACGCACGACGTTTGCCAAAGCTTTTGATATTGCCGCGAGCCAA GATGGCCGCTTTAGCTTGCAACCAAGCTTTTTCCGCACCGTTACGCCGCCGTTTGGCTTGGTCGTGATTGGCTTGATGAC GATTGCCCCATTGCTTGGTTGGCGCGGCGGCAACATGCGCAAATTTATTTTTGCGCTGCGTATGCCAGCAATTTTGGCAG TGGTGGCTACAGTAGTTGGATTGTTGCTTGGCGTGCGCAAACCGCTCTCGCTGGCTTACCTAGGGCTGGGCAGTTTGGGG CTTGGGGTTAATATTTTGATGATCGTGCGCACTGTGCGCGGCGGCTGGATGCGCATCGGCGGCTATGCAGCCCATATCGG TGCAGCCCTGCTGGTGATTGGATTCGTCGGCTCATCGGCCTACAGCTCGCCCGACATCAACATGACCATTCCCTTAAACA CCACTCAAACCGCTTTTGGCCATAAAATTACCTTCGAAGGCTACGCAACCCGCACCAACAACCAAGGAGCCGAAAAAGGC GTGATCGATTTGGCGGTGCAACGCGGCGATGGCGAAATCCAAGATGCTGCGCCACAGTTGTATCTCAACCCCCGCGATGG CCAATGGATCAGCAATCCAGCGATTATTCGCGAATGGTGGGGCGATTTGTATATCTCGCCTGGTAAGTATTTAGCTGCCA GCAACCCTAATTTATTGACCTTGGCGCAAGGCCAAAAAGGCAGCGTCGGCCCCTATAGTTTTGTGTTTCAAAACTTTGAT TATAGTTTGCCCGAAGGCCACAGTGGTGCTGAAGCGCAAACCGACGAGATTACAATCAAAGCGCGTTTGACCTTCTACGA TGAGGCGGGCAATGCCACGACAATCGAGCCAGGCTTACGCGCCGTCGCCAACGTTGGCAACCAGCCCGAGCCTTACACCT TGGCCGATGGCAACCAAGTGTTGATTTCAGCCTTGAGCTTGGAAAATCGCCAAGTGGAATTGCAAATTGTTGGGCTTGAT TTGCCAGTCTTGCCTGAACGCGCTGATATTTTTGTCAGCACCAAGCCAGCGGTTGGCTTGGTTTGGGTTGGCACAGTAGT GATGACGCTTGGTGGATCGTTGGCGGCAACGCGGCGCTTTATCGAACATGCCACCAAACGTCGTGCCCAAGCGAGCGTGC CGGAGGCCGCTACCCAAGCTGCTTAA
Upstream 100 bases:
>100_bases TGCCCATCGAAGTATCAAGAAGATACCCAAGCTGCCAAGTAGGTCGCAAAGCTGGGGTTTGTGCTAACTTCAGTTATCAA TCCAAACCAGAGGATCATCC
Downstream 100 bases:
>100_bases TCATAGTAGCTTCCCTCACCCCCTAGCCCCCTCTCCCGCCCAGCGAGCGAGGGGGAAGCACTCAATGATCAGGTTTGAAC TCCCCTCTCCTGCCGCCGTG
Product: cytochrome c assembly protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 781; Mature: 781
Protein sequence:
>781_residues MNLFMFGTLLLVVALVAAFTATTSYTLLIAGQRTALSWGRWSVRIAAVSILVASLLLLALFYFGRYEFDYVYNYSSNDLE LRYKLSALWAGQQGSFMIWALVGLLAAPLLLRRSREFEPFVLMPLMAVQVAIISFMLINNPFALRFDVAKQIIYAEDGRG LNELLHNPWMVIHPPILFLGYGLLAIPFAYAIAGLWRRDYDGWVKAALPWTITAWVILTTALTLGGYWAYETLGWGGYWA WDPVENSSLLPWLTVTALLHGMLVQRAHGGLRRANFSLAIVTYGLVMYASFLTRSGVLGDFSVHSFTEDGLGTTMAAVLV VGLVVSLGIFFQRWRDVPINKLSESLFSRDSLFVLGMFCLVIITLIVGLGTSMPLFSKTPILRDGLRTTFAKAFDIAASQ DGRFSLQPSFFRTVTPPFGLVVIGLMTIAPLLGWRGGNMRKFIFALRMPAILAVVATVVGLLLGVRKPLSLAYLGLGSLG LGVNILMIVRTVRGGWMRIGGYAAHIGAALLVIGFVGSSAYSSPDINMTIPLNTTQTAFGHKITFEGYATRTNNQGAEKG VIDLAVQRGDGEIQDAAPQLYLNPRDGQWISNPAIIREWWGDLYISPGKYLAASNPNLLTLAQGQKGSVGPYSFVFQNFD YSLPEGHSGAEAQTDEITIKARLTFYDEAGNATTIEPGLRAVANVGNQPEPYTLADGNQVLISALSLENRQVELQIVGLD LPVLPERADIFVSTKPAVGLVWVGTVVMTLGGSLAATRRFIEHATKRRAQASVPEAATQAA
Sequences:
>Translated_781_residues MNLFMFGTLLLVVALVAAFTATTSYTLLIAGQRTALSWGRWSVRIAAVSILVASLLLLALFYFGRYEFDYVYNYSSNDLE LRYKLSALWAGQQGSFMIWALVGLLAAPLLLRRSREFEPFVLMPLMAVQVAIISFMLINNPFALRFDVAKQIIYAEDGRG LNELLHNPWMVIHPPILFLGYGLLAIPFAYAIAGLWRRDYDGWVKAALPWTITAWVILTTALTLGGYWAYETLGWGGYWA WDPVENSSLLPWLTVTALLHGMLVQRAHGGLRRANFSLAIVTYGLVMYASFLTRSGVLGDFSVHSFTEDGLGTTMAAVLV VGLVVSLGIFFQRWRDVPINKLSESLFSRDSLFVLGMFCLVIITLIVGLGTSMPLFSKTPILRDGLRTTFAKAFDIAASQ DGRFSLQPSFFRTVTPPFGLVVIGLMTIAPLLGWRGGNMRKFIFALRMPAILAVVATVVGLLLGVRKPLSLAYLGLGSLG LGVNILMIVRTVRGGWMRIGGYAAHIGAALLVIGFVGSSAYSSPDINMTIPLNTTQTAFGHKITFEGYATRTNNQGAEKG VIDLAVQRGDGEIQDAAPQLYLNPRDGQWISNPAIIREWWGDLYISPGKYLAASNPNLLTLAQGQKGSVGPYSFVFQNFD YSLPEGHSGAEAQTDEITIKARLTFYDEAGNATTIEPGLRAVANVGNQPEPYTLADGNQVLISALSLENRQVELQIVGLD LPVLPERADIFVSTKPAVGLVWVGTVVMTLGGSLAATRRFIEHATKRRAQASVPEAATQAA >Mature_781_residues MNLFMFGTLLLVVALVAAFTATTSYTLLIAGQRTALSWGRWSVRIAAVSILVASLLLLALFYFGRYEFDYVYNYSSNDLE LRYKLSALWAGQQGSFMIWALVGLLAAPLLLRRSREFEPFVLMPLMAVQVAIISFMLINNPFALRFDVAKQIIYAEDGRG LNELLHNPWMVIHPPILFLGYGLLAIPFAYAIAGLWRRDYDGWVKAALPWTITAWVILTTALTLGGYWAYETLGWGGYWA WDPVENSSLLPWLTVTALLHGMLVQRAHGGLRRANFSLAIVTYGLVMYASFLTRSGVLGDFSVHSFTEDGLGTTMAAVLV VGLVVSLGIFFQRWRDVPINKLSESLFSRDSLFVLGMFCLVIITLIVGLGTSMPLFSKTPILRDGLRTTFAKAFDIAASQ DGRFSLQPSFFRTVTPPFGLVVIGLMTIAPLLGWRGGNMRKFIFALRMPAILAVVATVVGLLLGVRKPLSLAYLGLGSLG LGVNILMIVRTVRGGWMRIGGYAAHIGAALLVIGFVGSSAYSSPDINMTIPLNTTQTAFGHKITFEGYATRTNNQGAEKG VIDLAVQRGDGEIQDAAPQLYLNPRDGQWISNPAIIREWWGDLYISPGKYLAASNPNLLTLAQGQKGSVGPYSFVFQNFD YSLPEGHSGAEAQTDEITIKARLTFYDEAGNATTIEPGLRAVANVGNQPEPYTLADGNQVLISALSLENRQVELQIVGLD LPVLPERADIFVSTKPAVGLVWVGTVVMTLGGSLAATRRFIEHATKRRAQASVPEAATQAA
Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]
COG id: COG1138
COG function: function code O; Cytochrome c biogenesis factor
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]
Homologues:
Organism=Escherichia coli, GI1788524, Length=589, Percent_Identity=31.2393887945671, Blast_Score=184, Evalue=2e-47, Organism=Escherichia coli, GI1790511, Length=381, Percent_Identity=31.2335958005249, Blast_Score=152, Evalue=1e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002541 - InterPro: IPR003567 - InterPro: IPR003568 [H]
Pfam domain/function: PF01578 Cytochrom_C_asm [H]
EC number: NA
Molecular weight: Translated: 85278; Mature: 85278
Theoretical pI: Translated: 9.32; Mature: 9.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLFMFGTLLLVVALVAAFTATTSYTLLIAGQRTALSWGRWSVRIAAVSILVASLLLLAL CCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCHHHHHHHHHHHHHHHHHHHH FYFGRYEFDYVYNYSSNDLELRYKLSALWAGQQGSFMIWALVGLLAAPLLLRRSREFEPF HHHCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC VLMPLMAVQVAIISFMLINNPFALRFDVAKQIIYAEDGRGLNELLHNPWMVIHPPILFLG HHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHEEECCCCCHHHHHHCCEEEEECCHHHHH YGLLAIPFAYAIAGLWRRDYDGWVKAALPWTITAWVILTTALTLGGYWAYETLGWGGYWA HHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHCCEEHHHHCCCCCEEE WDPVENSSLLPWLTVTALLHGMLVQRAHGGLRRANFSLAIVTYGLVMYASFLTRSGVLGD CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC FSVHSFTEDGLGTTMAAVLVVGLVVSLGIFFQRWRDVPINKLSESLFSRDSLFVLGMFCL CCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHH VIITLIVGLGTSMPLFSKTPILRDGLRTTFAKAFDIAASQDGRFSLQPSFFRTVTPPFGL HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHCCCCCHHH VVIGLMTIAPLLGWRGGNMRKFIFALRMPAILAVVATVVGLLLGVRKPLSLAYLGLGSLG HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCCCCC LGVNILMIVRTVRGGWMRIGGYAAHIGAALLVIGFVGSSAYSSPDINMTIPLNTTQTAFG HHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHCC HKITFEGYATRTNNQGAEKGVIDLAVQRGDGEIQDAAPQLYLNPRDGQWISNPAIIREWW CEEEECCEEECCCCCCCCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHC GDLYISPGKYLAASNPNLLTLAQGQKGSVGPYSFVFQNFDYSLPEGHSGAEAQTDEITIK CCEEECCCCEEECCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEE ARLTFYDEAGNATTIEPGLRAVANVGNQPEPYTLADGNQVLISALSLENRQVELQIVGLD EEEEEEECCCCCEEECHHHHHHHHCCCCCCCEEECCCCEEEEEEEECCCCEEEEEEEECC LPVLPERADIFVSTKPAVGLVWVGTVVMTLGGSLAATRRFIEHATKRRAQASVPEAATQA CCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHCC A C >Mature Secondary Structure MNLFMFGTLLLVVALVAAFTATTSYTLLIAGQRTALSWGRWSVRIAAVSILVASLLLLAL CCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCHHHHHHHHHHHHHHHHHHHH FYFGRYEFDYVYNYSSNDLELRYKLSALWAGQQGSFMIWALVGLLAAPLLLRRSREFEPF HHHCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC VLMPLMAVQVAIISFMLINNPFALRFDVAKQIIYAEDGRGLNELLHNPWMVIHPPILFLG HHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHEEECCCCCHHHHHHCCEEEEECCHHHHH YGLLAIPFAYAIAGLWRRDYDGWVKAALPWTITAWVILTTALTLGGYWAYETLGWGGYWA HHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHCCEEHHHHCCCCCEEE WDPVENSSLLPWLTVTALLHGMLVQRAHGGLRRANFSLAIVTYGLVMYASFLTRSGVLGD CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC FSVHSFTEDGLGTTMAAVLVVGLVVSLGIFFQRWRDVPINKLSESLFSRDSLFVLGMFCL CCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHH VIITLIVGLGTSMPLFSKTPILRDGLRTTFAKAFDIAASQDGRFSLQPSFFRTVTPPFGL HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHCCCCCHHH VVIGLMTIAPLLGWRGGNMRKFIFALRMPAILAVVATVVGLLLGVRKPLSLAYLGLGSLG HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCCCCC LGVNILMIVRTVRGGWMRIGGYAAHIGAALLVIGFVGSSAYSSPDINMTIPLNTTQTAFG HHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHCC HKITFEGYATRTNNQGAEKGVIDLAVQRGDGEIQDAAPQLYLNPRDGQWISNPAIIREWW CEEEECCEEECCCCCCCCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHC GDLYISPGKYLAASNPNLLTLAQGQKGSVGPYSFVFQNFDYSLPEGHSGAEAQTDEITIK CCEEECCCCEEECCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEE ARLTFYDEAGNATTIEPGLRAVANVGNQPEPYTLADGNQVLISALSLENRQVELQIVGLD EEEEEEECCCCCEEECHHHHHHHHCCCCCCCEEECCCCEEEEEEEECCCCEEEEEEEECC LPVLPERADIFVSTKPAVGLVWVGTVVMTLGGSLAATRRFIEHATKRRAQASVPEAATQA CCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHCC A C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]