Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
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Accession | NC_009972 |
Length | 6,346,587 |
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The map label for this gene is 159899228
Identifier: 159899228
GI number: 159899228
Start: 3463268
End: 3463951
Strand: Direct
Name: 159899228
Synonym: Haur_2709
Alternate gene names: NA
Gene position: 3463268-3463951 (Clockwise)
Preceding gene: 159899227
Following gene: 159899229
Centisome position: 54.57
GC content: 40.35
Gene sequence:
>684_bases ATGAGCTATGTTGAGCAACTCTTGGCTGAAAACGAAGATATTAAATATGAAGCCCATCAGCACCCGTTCGTTTTCTTGGG ACGCATTAGTTTTGAAGTCGTTGTTATGGCAATTATGGTTGCAGCAATTGTGTTTATCACCAATTTGCCTGGCCAAAAAT GGCAAGAAATTCAACCATATGTGCAATTTATTTTAATTGCGATCATTCTGCTCATTCTCGCCAGCGCAGTGATTGACTTC CTACGCTGGCGGAACGAAAAGTTTCTGCTTACCGATCGTCGAGTCATTCATTTGCGGGGCATTATTAATAAATCGACGCT CGATTCATCGCTCGATAAAATTAACGATGTCCAAATGCGTCAAACCTTTATGGGGCGGATGTTCAATTATGGTGATCTTG AAGTCCAAACGGCTAACGAAAATAGTGATAATCTTTTTACCTTTATTCGTAACCCACTGGAATTTAAACGCGCCATGATG AATGCCAAAGAGGAACACGACCGCGAACCAGCAATGTATATGCAATCGGTCAACGCTTATCAAAACTTTGTACCACCATA TCAACGCCCCAACGATCAAGACGTTGAAGAATTGTTATTGCGCTTAAACGATCTACGTCAGAAAAATTTAATTACTGATG CTGATTTTGAGGCCAAAAAACGCGAAATTTTAAGTCGGATATAA
Upstream 100 bases:
>100_bases GTGAGCTAAAATCAACCCAATTTCTCAATTTAGTGCGTGGTTGACAAGCCTATAGCTTACCACTACACTAGCCGCGATTC CCCCTAAAGGAGCACAACCA
Downstream 100 bases:
>100_bases TGCCTGCGGCCATAGCAATGTGGCTATTGTTGCAAAGGATTTCAATTCATGACCACCAACCGAACTCAAGCAATCACTGG CGCAGTCGCTGCCATTCGTC
Product: membrane-flanked domain-containing protein
Products: NA
Alternate protein names: Membrane-Flanked Domain Protein
Number of amino acids: Translated: 227; Mature: 226
Protein sequence:
>227_residues MSYVEQLLAENEDIKYEAHQHPFVFLGRISFEVVVMAIMVAAIVFITNLPGQKWQEIQPYVQFILIAIILLILASAVIDF LRWRNEKFLLTDRRVIHLRGIINKSTLDSSLDKINDVQMRQTFMGRMFNYGDLEVQTANENSDNLFTFIRNPLEFKRAMM NAKEEHDREPAMYMQSVNAYQNFVPPYQRPNDQDVEELLLRLNDLRQKNLITDADFEAKKREILSRI
Sequences:
>Translated_227_residues MSYVEQLLAENEDIKYEAHQHPFVFLGRISFEVVVMAIMVAAIVFITNLPGQKWQEIQPYVQFILIAIILLILASAVIDF LRWRNEKFLLTDRRVIHLRGIINKSTLDSSLDKINDVQMRQTFMGRMFNYGDLEVQTANENSDNLFTFIRNPLEFKRAMM NAKEEHDREPAMYMQSVNAYQNFVPPYQRPNDQDVEELLLRLNDLRQKNLITDADFEAKKREILSRI >Mature_226_residues SYVEQLLAENEDIKYEAHQHPFVFLGRISFEVVVMAIMVAAIVFITNLPGQKWQEIQPYVQFILIAIILLILASAVIDFL RWRNEKFLLTDRRVIHLRGIINKSTLDSSLDKINDVQMRQTFMGRMFNYGDLEVQTANENSDNLFTFIRNPLEFKRAMMN AKEEHDREPAMYMQSVNAYQNFVPPYQRPNDQDVEELLLRLNDLRQKNLITDADFEAKKREILSRI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26746; Mature: 26615
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYVEQLLAENEDIKYEAHQHPFVFLGRISFEVVVMAIMVAAIVFITNLPGQKWQEIQPY CCHHHHHHHCCCCCCEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH VQFILIAIILLILASAVIDFLRWRNEKFLLTDRRVIHLRGIINKSTLDSSLDKINDVQMR HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH QTFMGRMFNYGDLEVQTANENSDNLFTFIRNPLEFKRAMMNAKEEHDREPAMYMQSVNAY HHHHHHHCCCCCEEEEECCCCCCHHHHHHHCHHHHHHHHHCCHHHHCCCHHHHHHHHHHH QNFVPPYQRPNDQDVEELLLRLNDLRQKNLITDADFEAKKREILSRI HHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC >Mature Secondary Structure SYVEQLLAENEDIKYEAHQHPFVFLGRISFEVVVMAIMVAAIVFITNLPGQKWQEIQPY CHHHHHHHCCCCCCEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH VQFILIAIILLILASAVIDFLRWRNEKFLLTDRRVIHLRGIINKSTLDSSLDKINDVQMR HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH QTFMGRMFNYGDLEVQTANENSDNLFTFIRNPLEFKRAMMNAKEEHDREPAMYMQSVNAY HHHHHHHCCCCCEEEEECCCCCCHHHHHHHCHHHHHHHHHCCHHHHCCCHHHHHHHHHHH QNFVPPYQRPNDQDVEELLLRLNDLRQKNLITDADFEAKKREILSRI HHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA