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The map label for this gene is ybbI [C]

Identifier: 159898009

GI number: 159898009

Start: 1732743

End: 1733255

Strand: Reverse

Name: ybbI [C]

Synonym: Haur_1484

Alternate gene names: 159898009

Gene position: 1733255-1732743 (Counterclockwise)

Preceding gene: 159898010

Following gene: 159898008

Centisome position: 27.31

GC content: 44.05

Gene sequence:

>513_bases
ATGTTTGGCCCAGTGGGTCGATTAGGACTTGTACATAAACATAATCAATTGCCACTTGCTTTAGAGCATACTCTAAGCTA
TATCATACAATCAGTAGATGTTGATATTTGTGCAGGAGTTGAATGTATGGTGATGCAACAGGTCGTTGAACAAAGCTTAA
CCATCCAACAGATGGCCGAAATTACTGGCCTCAGTGCCCACACCTTGCGATATTACGAACGTGCAGGCTTGCTGCACGAT
TTGGTTGATCGTAATCAGCAAAATGGCTATCGCTCCTATACCCAACGCCATATCAATTGGATTCATTTCATCAAATGCCT
ACGAGCCACGGGCATGCCAATTCGTGATATTCGGCGTTACACCGAATTGCTGCATCAAGGCGACCATACCGTGCGCGATC
GTTTGAACTTGTTAAAAGCACATCGACTACGGGTTGAGCAGCAACTAACCGAGGTGCAACAACATCTTGAGGCGGTTAAA
CGCAAAATTAGTTATTATGAAACGCTTGATTAA

Upstream 100 bases:

>100_bases
GCCAAGCTAGCCATCCCCTGAGCATTCGGCTTAGCCCATTGCACATTCAGGTGATCAACGACCCCGACACCACGCTTGAG
CAGTTTTGGCAGGAGCAAAA

Downstream 100 bases:

>100_bases
TGGGGATTAAACGTTCAATTAATCGCCTTAAAAATCAGCGCTTAACCTGATCTTTCATTCTCAAACTATGGTATGATCGG
CGTAAGTTGATCGATTTTAG

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MFGPVGRLGLVHKHNQLPLALEHTLSYIIQSVDVDICAGVECMVMQQVVEQSLTIQQMAEITGLSAHTLRYYERAGLLHD
LVDRNQQNGYRSYTQRHINWIHFIKCLRATGMPIRDIRRYTELLHQGDHTVRDRLNLLKAHRLRVEQQLTEVQQHLEAVK
RKISYYETLD

Sequences:

>Translated_170_residues
MFGPVGRLGLVHKHNQLPLALEHTLSYIIQSVDVDICAGVECMVMQQVVEQSLTIQQMAEITGLSAHTLRYYERAGLLHD
LVDRNQQNGYRSYTQRHINWIHFIKCLRATGMPIRDIRRYTELLHQGDHTVRDRLNLLKAHRLRVEQQLTEVQQHLEAVK
RKISYYETLD
>Mature_170_residues
MFGPVGRLGLVHKHNQLPLALEHTLSYIIQSVDVDICAGVECMVMQQVVEQSLTIQQMAEITGLSAHTLRYYERAGLLHD
LVDRNQQNGYRSYTQRHINWIHFIKCLRATGMPIRDIRRYTELLHQGDHTVRDRLNLLKAHRLRVEQQLTEVQQHLEAVK
RKISYYETLD

Specific function: Copper responsive transcription regulator [C]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 19896; Mature: 19896

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGPVGRLGLVHKHNQLPLALEHTLSYIIQSVDVDICAGVECMVMQQVVEQSLTIQQMAE
CCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHHHH
ITGLSAHTLRYYERAGLLHDLVDRNQQNGYRSYTQRHINWIHFIKCLRATGMPIRDIRRY
HHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
TELLHQGDHTVRDRLNLLKAHRLRVEQQLTEVQQHLEAVKRKISYYETLD
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFGPVGRLGLVHKHNQLPLALEHTLSYIIQSVDVDICAGVECMVMQQVVEQSLTIQQMAE
CCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHHHH
ITGLSAHTLRYYERAGLLHDLVDRNQQNGYRSYTQRHINWIHFIKCLRATGMPIRDIRRY
HHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
TELLHQGDHTVRDRLNLLKAHRLRVEQQLTEVQQHLEAVKRKISYYETLD
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]