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The map label for this gene is rbsR [H]

Identifier: 159898004

GI number: 159898004

Start: 1728072

End: 1729160

Strand: Reverse

Name: rbsR [H]

Synonym: Haur_1479

Alternate gene names: 159898004

Gene position: 1729160-1728072 (Counterclockwise)

Preceding gene: 159898007

Following gene: 159898001

Centisome position: 27.25

GC content: 54.73

Gene sequence:

>1089_bases
GTGGCACATGATCACGAACCCGCAAAGCCCCATCGGATCACCATTAGCACCGTTGCCGCTGCTTTAGGGGTCGCTGTCTC
GACCGTTTCTAACGCCTACAATCGACCCGACCAACTTTCAGCAGAGCTGCGTGAACGAGTGCTGGCAGTCGCTACCGAGC
TTGGTTACCCTGGGCCAAACCCAGTTGCTCGCAGTTTACGCCAACAACGGGCTGGCGCGGTCGGGGTGCTGTTTGCCGAG
CGCCTGCCCTATGCCTTTCGCGATCCGGCGGTGTTGATGGTGCTTGAAGGGATTGCTACCACGCTCGAACAGGCTGGTCT
CGGCTTATTACTCGTGCCAGGTCGCGACGACGACACCACCACCGTTCAACAAGCCTTGGTCGATGGCTTTATTGTCTATT
CGATGATGGAAACTGATCCCTTGGTTCAGGCTGCTCTGAAACGTCGGCTACCGACAGTGCTGCTTGACCAACCGCCCCGC
CCTGATGTACCGTCGATTATCGTTGATGATGAGGCTGGCGCACGTATGGCCACCGAGCATCTATTAAGCCTCGGCCATCG
CCAATTTGCAATTATCACCGATCGCTTGGTCGAAACCAATCTACGACCATCGAGTGCGCCAATAAACGTTCATGATCAGA
GCAAACCAACCTTTTTCGTCACCCAATTACGCTTGCAAGGCTATCGCCAGCCACTTGAAGCAGCAGGCATCGATTGGCGC
AGCGTGCCAATTTACGATTGCAACGATAACAACGAAGCCGATGGTGCAGCAGCCATCCAAATTTTACTCGCCCACAACCC
ACGTCCAACTGCCATTCTCTGTTTAACCGATCGTTTGGCGTTGGGGGCAATCGCTGGAGCGCAACAAGCGGGCTATCAGG
TTCCGCAACAGCTTTCAATCGTGGGCTTTGATGATATTCCTCAAGCCAGTCAAAGCGTGCCGAGCTTAACCACCATTCGC
CAAGATCATCGCCAAAAAGGCTTATCAGCAGGCCAAGCCTTGATTGAACTGCTGGCTGGCCAAAGCCCAACCAGCTATCA
ACGGCTGGCAGTCGAGTTGGTAGTCCGCGATTCGACCGCAGCAATTTAA

Upstream 100 bases:

>100_bases
ACGATTCAACCCATTACCTTTCTGAAACGTTTTTTCTGTAACGATTCAGAAGTATAGCATGTATAATAAAGGCTGACAAT
CAGTCCAAAGGAGCAGATCT

Downstream 100 bases:

>100_bases
ACAGAAAACCCTGATCCTAAAGCAATTAGGATCAGGGTTTTCTGCACTATGTCAAATTTATTCGAGCGGTAAACCGGTCA
TTGGGTCGAACAAGCCACGG

Product: LacI family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 361

Protein sequence:

>362_residues
MAHDHEPAKPHRITISTVAAALGVAVSTVSNAYNRPDQLSAELRERVLAVATELGYPGPNPVARSLRQQRAGAVGVLFAE
RLPYAFRDPAVLMVLEGIATTLEQAGLGLLLVPGRDDDTTTVQQALVDGFIVYSMMETDPLVQAALKRRLPTVLLDQPPR
PDVPSIIVDDEAGARMATEHLLSLGHRQFAIITDRLVETNLRPSSAPINVHDQSKPTFFVTQLRLQGYRQPLEAAGIDWR
SVPIYDCNDNNEADGAAAIQILLAHNPRPTAILCLTDRLALGAIAGAQQAGYQVPQQLSIVGFDDIPQASQSVPSLTTIR
QDHRQKGLSAGQALIELLAGQSPTSYQRLAVELVVRDSTAAI

Sequences:

>Translated_362_residues
MAHDHEPAKPHRITISTVAAALGVAVSTVSNAYNRPDQLSAELRERVLAVATELGYPGPNPVARSLRQQRAGAVGVLFAE
RLPYAFRDPAVLMVLEGIATTLEQAGLGLLLVPGRDDDTTTVQQALVDGFIVYSMMETDPLVQAALKRRLPTVLLDQPPR
PDVPSIIVDDEAGARMATEHLLSLGHRQFAIITDRLVETNLRPSSAPINVHDQSKPTFFVTQLRLQGYRQPLEAAGIDWR
SVPIYDCNDNNEADGAAAIQILLAHNPRPTAILCLTDRLALGAIAGAQQAGYQVPQQLSIVGFDDIPQASQSVPSLTTIR
QDHRQKGLSAGQALIELLAGQSPTSYQRLAVELVVRDSTAAI
>Mature_361_residues
AHDHEPAKPHRITISTVAAALGVAVSTVSNAYNRPDQLSAELRERVLAVATELGYPGPNPVARSLRQQRAGAVGVLFAER
LPYAFRDPAVLMVLEGIATTLEQAGLGLLLVPGRDDDTTTVQQALVDGFIVYSMMETDPLVQAALKRRLPTVLLDQPPRP
DVPSIIVDDEAGARMATEHLLSLGHRQFAIITDRLVETNLRPSSAPINVHDQSKPTFFVTQLRLQGYRQPLEAAGIDWRS
VPIYDCNDNNEADGAAAIQILLAHNPRPTAILCLTDRLALGAIAGAQQAGYQVPQQLSIVGFDDIPQASQSVPSLTTIRQ
DHRQKGLSAGQALIELLAGQSPTSYQRLAVELVVRDSTAAI

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786540, Length=358, Percent_Identity=29.8882681564246, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1790369, Length=360, Percent_Identity=29.4444444444444, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1790194, Length=359, Percent_Identity=29.5264623955432, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1787948, Length=338, Percent_Identity=28.1065088757396, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1789068, Length=318, Percent_Identity=25.7861635220126, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787906, Length=333, Percent_Identity=26.7267267267267, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1789202, Length=315, Percent_Identity=26.984126984127, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787580, Length=337, Percent_Identity=27.299703264095, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1788474, Length=318, Percent_Identity=28.3018867924528, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI48994940, Length=346, Percent_Identity=25.1445086705202, Blast_Score=73, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 39035; Mature: 38904

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHDHEPAKPHRITISTVAAALGVAVSTVSNAYNRPDQLSAELRERVLAVATELGYPGPN
CCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCC
PVARSLRQQRAGAVGVLFAERLPYAFRDPAVLMVLEGIATTLEQAGLGLLLVPGRDDDTT
HHHHHHHHHHCCCCEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHH
TVQQALVDGFIVYSMMETDPLVQAALKRRLPTVLLDQPPRPDVPSIIVDDEAGARMATEH
HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEECCCCCCCCCEEEEECCCCHHHHHHH
LLSLGHRQFAIITDRLVETNLRPSSAPINVHDQSKPTFFVTQLRLQGYRQPLEAAGIDWR
HHHCCCCEEEHHHHHHHHCCCCCCCCCEEECCCCCCEEEEEHHHHHHHCCCHHHCCCCCC
SVPIYDCNDNNEADGAAAIQILLAHNPRPTAILCLTDRLALGAIAGAQQAGYQVPQQLSI
CCEEEECCCCCCCCCHHHEEEEEECCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCEEE
VGFDDIPQASQSVPSLTTIRQDHRQKGLSAGQALIELLAGQSPTSYQRLAVELVVRDSTA
ECCCCCCCHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHEEEEEEEECCCC
AI
CC
>Mature Secondary Structure 
AHDHEPAKPHRITISTVAAALGVAVSTVSNAYNRPDQLSAELRERVLAVATELGYPGPN
CCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCC
PVARSLRQQRAGAVGVLFAERLPYAFRDPAVLMVLEGIATTLEQAGLGLLLVPGRDDDTT
HHHHHHHHHHCCCCEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHH
TVQQALVDGFIVYSMMETDPLVQAALKRRLPTVLLDQPPRPDVPSIIVDDEAGARMATEH
HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEECCCCCCCCCEEEEECCCCHHHHHHH
LLSLGHRQFAIITDRLVETNLRPSSAPINVHDQSKPTFFVTQLRLQGYRQPLEAAGIDWR
HHHCCCCEEEHHHHHHHHCCCCCCCCCEEECCCCCCEEEEEHHHHHHHCCCHHHCCCCCC
SVPIYDCNDNNEADGAAAIQILLAHNPRPTAILCLTDRLALGAIAGAQQAGYQVPQQLSI
CCEEEECCCCCCCCCHHHEEEEEECCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCEEE
VGFDDIPQASQSVPSLTTIRQDHRQKGLSAGQALIELLAGQSPTSYQRLAVELVVRDSTA
ECCCCCCCHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHEEEEEEEECCCC
AI
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]