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The map label for this gene is uspF [C]

Identifier: 159897612

GI number: 159897612

Start: 1239451

End: 1240800

Strand: Reverse

Name: uspF [C]

Synonym: Haur_1083

Alternate gene names: 159897612

Gene position: 1240800-1239451 (Counterclockwise)

Preceding gene: 159897613

Following gene: 159897611

Centisome position: 19.55

GC content: 52.81

Gene sequence:

>1350_bases
ATGAGCTACTCAATCGTGATCATTGACCCAGATCAAGGTTCAGCCCAAACAACTGCCGCGCGATTTCAGCGGCGTTGGGG
CCAGAACGTCCAAGTCAATATTGTTAAACAAGCTGATTGGGCTAGTGTTCAGGCTCATAGCCCCAACCTAGTCGTGATTG
ACCCCGCGCCATATCGGCTGCATGGGTTGCGCTTACTCGAACAACTTTGCGAAGAGCAACCATCAACAGCCATTGCCGTG
GTCGCTTCGGGTAGCTCCCCAAGCATGCGGCAACGCCTACGCAACTTGCCAATCACTTCATATTTGGAAAAACCTAGCTC
GTTAGCCCCCCTACTCGGTGAACTTGATCACCTTGTTGAGAGCAATGTCGCTCTCCAATCCAAAGGAGGATTGGTTATGG
AACGCCAAATGTTGATTCCACTTGATGGTTCACTGTTAGCGGAACAAGCTTTGGATTATGCGGTGGTTTTAGCTCGCCGC
AACAGCAGTGTTTTGCATTTAGTTCGGGTGATTGGCTATCCACCGCTGGTTCCGGCTTACGAATGGCCAGTGCCAAGCGC
CGTTGATAGCCGTCAATGGTTAGCCGACGAACGTCAAGCCGCCCAAACCTACCTTGATGAACTTAAAGCTCGTTATGAGC
AACAAGGCTTAGCGGTACGAACAACCGTGCTTGATGGCGAGCCAGCTCATGCAATTGTCCAATTTGCGACCGAACAAAAT
AGCGTGCGCGAAATTGTGCTCGCCAGTCATGGTCGCAGTGGGCTTGGGCGTTGGGTACTCGGTAGCATCGCGGAAAAATT
AGTCCAAGCTACGCCAGTGCCAATTTTGGTCATCCATGGCGATGAACGCAAAGTCGAAACCTTTAAAATTCCGCCAGAAT
TGCGCACGATTGTTGTGCCACTCGACGGCTCAGCCATTGCTGAACAAGCTTTGCCCTTGGCCAGCCAACTAGCCGAGGCC
CATAGTGCTGAACTAGTCTTGCTGAGTGTCACCCCGGGCATCGACGATCCTGGTTTGATCGAATCGGGACTTGTGCCAAT
GTGGAGTGCTGGCGAAAAAGCTCAAGCCCGTGATCAAGCCCAGAAATATTTGCAACAGCTTGAACAATCGTTGCAAACGC
CACGGCTACGTCTCCGCCATCTCGTCGTGAGCGGCACACCCGCCGAAATGATCGACGAAATTGCCCAAGAAGCAGTTGCC
AGCATGATCGTTATGGCAACCCATGGACGCAGTGGCTTCAGTCGCATGTGGATGGGCAGCGTAGCAACCAAGCTCATTCG
CAGCAGCCAACGGCCAATCTTCTTGGTACGGGCGGTCGAACAAGCTGCCGAACGCGGCCAACCACTCTAA

Upstream 100 bases:

>100_bases
TATTGGTAAGGATTTTAACACCATTTGGTTATCCTCTCTTAACCCGATTGACAGGCTATCCGTTCTACACTATCTACAGT
GATAACAAGGATAGCAGGCC

Downstream 100 bases:

>100_bases
ACTTTTCCTCTTGAGAAGGAATCATGCCCCAGCATCACCTAATTTTGGGTGGTGTTGGGGCATTTTCTTTAACCACAAAG
GACACGAAGAGCACGAATTA

Product: UspA domain-containing protein

Products: NA

Alternate protein names: USP Rv2005c [H]

Number of amino acids: Translated: 449; Mature: 448

Protein sequence:

>449_residues
MSYSIVIIDPDQGSAQTTAARFQRRWGQNVQVNIVKQADWASVQAHSPNLVVIDPAPYRLHGLRLLEQLCEEQPSTAIAV
VASGSSPSMRQRLRNLPITSYLEKPSSLAPLLGELDHLVESNVALQSKGGLVMERQMLIPLDGSLLAEQALDYAVVLARR
NSSVLHLVRVIGYPPLVPAYEWPVPSAVDSRQWLADERQAAQTYLDELKARYEQQGLAVRTTVLDGEPAHAIVQFATEQN
SVREIVLASHGRSGLGRWVLGSIAEKLVQATPVPILVIHGDERKVETFKIPPELRTIVVPLDGSAIAEQALPLASQLAEA
HSAELVLLSVTPGIDDPGLIESGLVPMWSAGEKAQARDQAQKYLQQLEQSLQTPRLRLRHLVVSGTPAEMIDEIAQEAVA
SMIVMATHGRSGFSRMWMGSVATKLIRSSQRPIFLVRAVEQAAERGQPL

Sequences:

>Translated_449_residues
MSYSIVIIDPDQGSAQTTAARFQRRWGQNVQVNIVKQADWASVQAHSPNLVVIDPAPYRLHGLRLLEQLCEEQPSTAIAV
VASGSSPSMRQRLRNLPITSYLEKPSSLAPLLGELDHLVESNVALQSKGGLVMERQMLIPLDGSLLAEQALDYAVVLARR
NSSVLHLVRVIGYPPLVPAYEWPVPSAVDSRQWLADERQAAQTYLDELKARYEQQGLAVRTTVLDGEPAHAIVQFATEQN
SVREIVLASHGRSGLGRWVLGSIAEKLVQATPVPILVIHGDERKVETFKIPPELRTIVVPLDGSAIAEQALPLASQLAEA
HSAELVLLSVTPGIDDPGLIESGLVPMWSAGEKAQARDQAQKYLQQLEQSLQTPRLRLRHLVVSGTPAEMIDEIAQEAVA
SMIVMATHGRSGFSRMWMGSVATKLIRSSQRPIFLVRAVEQAAERGQPL
>Mature_448_residues
SYSIVIIDPDQGSAQTTAARFQRRWGQNVQVNIVKQADWASVQAHSPNLVVIDPAPYRLHGLRLLEQLCEEQPSTAIAVV
ASGSSPSMRQRLRNLPITSYLEKPSSLAPLLGELDHLVESNVALQSKGGLVMERQMLIPLDGSLLAEQALDYAVVLARRN
SSVLHLVRVIGYPPLVPAYEWPVPSAVDSRQWLADERQAAQTYLDELKARYEQQGLAVRTTVLDGEPAHAIVQFATEQNS
VREIVLASHGRSGLGRWVLGSIAEKLVQATPVPILVIHGDERKVETFKIPPELRTIVVPLDGSAIAEQALPLASQLAEAH
SAELVLLSVTPGIDDPGLIESGLVPMWSAGEKAQARDQAQKYLQQLEQSLQTPRLRLRHLVVSGTPAEMIDEIAQEAVAS
MIVMATHGRSGFSRMWMGSVATKLIRSSQRPIFLVRAVEQAAERGQPL

Specific function: Unknown

COG id: COG0589

COG function: function code T; Universal stress protein UspA and related nucleotide-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the universal stress protein A family [H]

Homologues:

None

Paralogues:

None

Copy number: 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014729
- InterPro:   IPR006015
- InterPro:   IPR006016 [H]

Pfam domain/function: PF00582 Usp [H]

EC number: NA

Molecular weight: Translated: 49121; Mature: 48990

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYSIVIIDPDQGSAQTTAARFQRRWGQNVQVNIVKQADWASVQAHSPNLVVIDPAPYRL
CCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEEECCCCEEEECCCCCHH
HGLRLLEQLCEEQPSTAIAVVASGSSPSMRQRLRNLPITSYLEKPSSLAPLLGELDHLVE
HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHH
SNVALQSKGGLVMERQMLIPLDGSLLAEQALDYAVVLARRNSSVLHLVRVIGYPPLVPAY
CCCEEECCCCEEEEEEEEECCCCHHHHHHHHCEEEEEEECCCHHHHHHHHHCCCCCCCCC
EWPVPSAVDSRQWLADERQAAQTYLDELKARYEQQGLAVRTTVLDGEPAHAIVQFATEQN
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCC
SVREIVLASHGRSGLGRWVLGSIAEKLVQATPVPILVIHGDERKVETFKIPPELRTIVVP
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECCCCCEEEEEE
LDGSAIAEQALPLASQLAEAHSAELVLLSVTPGIDDPGLIESGLVPMWSAGEKAQARDQA
CCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHCCCCCCCCCCCHHHHHHHH
QKYLQQLEQSLQTPRLRLRHLVVSGTPAEMIDEIAQEAVASMIVMATHGRSGFSRMWMGS
HHHHHHHHHHHHCHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHH
VATKLIRSSQRPIFLVRAVEQAAERGQPL
HHHHHHHCCCCCEEEHHHHHHHHHCCCCC
>Mature Secondary Structure 
SYSIVIIDPDQGSAQTTAARFQRRWGQNVQVNIVKQADWASVQAHSPNLVVIDPAPYRL
CEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEEECCCCEEEECCCCCHH
HGLRLLEQLCEEQPSTAIAVVASGSSPSMRQRLRNLPITSYLEKPSSLAPLLGELDHLVE
HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHH
SNVALQSKGGLVMERQMLIPLDGSLLAEQALDYAVVLARRNSSVLHLVRVIGYPPLVPAY
CCCEEECCCCEEEEEEEEECCCCHHHHHHHHCEEEEEEECCCHHHHHHHHHCCCCCCCCC
EWPVPSAVDSRQWLADERQAAQTYLDELKARYEQQGLAVRTTVLDGEPAHAIVQFATEQN
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCC
SVREIVLASHGRSGLGRWVLGSIAEKLVQATPVPILVIHGDERKVETFKIPPELRTIVVP
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECCCCCEEEEEE
LDGSAIAEQALPLASQLAEAHSAELVLLSVTPGIDDPGLIESGLVPMWSAGEKAQARDQA
CCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHCCCCCCCCCCCHHHHHHHH
QKYLQQLEQSLQTPRLRLRHLVVSGTPAEMIDEIAQEAVASMIVMATHGRSGFSRMWMGS
HHHHHHHHHHHHCHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHH
VATKLIRSSQRPIFLVRAVEQAAERGQPL
HHHHHHHCCCCCEEEHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]