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The map label for this gene is cobD [H]

Identifier: 159897586

GI number: 159897586

Start: 1206147

End: 1207076

Strand: Reverse

Name: cobD [H]

Synonym: Haur_1057

Alternate gene names: 159897586

Gene position: 1207076-1206147 (Counterclockwise)

Preceding gene: 159897587

Following gene: 159897585

Centisome position: 19.02

GC content: 57.1

Gene sequence:

>930_bases
ATGGCTAAACGAGTGCTGGGTGGCTTATTGGCATTGGCCTGCGATGCGCTCTTGCCCGAATTGCCCAACCAGTTGCATCC
AGTGGTGTGGATGGGCAAGTGGATCAAGCGGGGCGAGCAGTTCGCGCCAAGCAACGAGGCTGATCGTTTGGTTTGGGGCG
CAATTTGGCTCGGCGCGGGCATGGGCTTGAGCGCAGGTTTAGCTGCCCGAATTCCCAAACATCCATTGGCGCAAGCCTTG
GCTGCCCAAAGTTTGCTGGCCTATCGGGCGCTTGATCGAGCGGTTGGTGAGGTGCAAACCGCATTGGTAGCCGATGATTT
GGCCGAAGCACGACGTTTGTTGAGCTGGCATTTGGTCAGCCGCGATACGGCGGAGCTAAGCCCAAGCGAGGTTGCCGCCG
CCGCAATTGAATCGCTGGCCGAAAATCTCTCAGATAGCGTGATTGCCCCGTTGTTTTGGTATTTGGCGGCAGGCTTGCCA
GGCTTGGCGGCCTATCGTATGAGCAATACCTTCGATGCGATGTGGGGCTATCGAAATCAACGCTTTGAATATCTTGGCAA
AGTCGCCGCCCGTTGCGATGATGCACTTAATTTAGTTCCCGCACGTTTGACCGCTGGCCTGCTTTGGCTGGTTGCCCATG
GCCAACGCCAACGAACATGGCAGGTAGTTTGGCGTGATCATGGCAAAACAGCCTCGCCCAATGCTGGTTGGCCAATGGCG
GCCATGGCTGGGGCGTTAGATACTCAGTTGATCAAAATTGGGCATTATGCCCTTGGCGATGGCTTAACCCAGCCCGACCC
AGCCTTGATGCAAACTGCTCGCCAGCTCGCCCGCCGCGTGATGTTTCTGGTTGTGGTGGGCTTGGCGATGGGCGCTTGGG
GAGCAGAACAGGTCAACGCAGAGGCGCAGAGATTTAAGGCTATTGGCTGA

Upstream 100 bases:

>100_bases
GCAGGCTTAAGGTTGGTCAGCGCCTGGCATCGCTTGGATATCCAACGACCATATGGTGATGGTAGTAATGGTTTATTTAT
CGTTGCTCAGCGAGCAAGCA

Downstream 100 bases:

>100_bases
AGGCTATTGACTATAGACGATTGATTGCAAATTCCAATAATTGTTCCGATAGCCTATAGCCCATAGCCTCGACCCTTCGT
GCCCTTCGTGTCCTTCGTGG

Product: cobalamin biosynthesis protein CobD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MAKRVLGGLLALACDALLPELPNQLHPVVWMGKWIKRGEQFAPSNEADRLVWGAIWLGAGMGLSAGLAARIPKHPLAQAL
AAQSLLAYRALDRAVGEVQTALVADDLAEARRLLSWHLVSRDTAELSPSEVAAAAIESLAENLSDSVIAPLFWYLAAGLP
GLAAYRMSNTFDAMWGYRNQRFEYLGKVAARCDDALNLVPARLTAGLLWLVAHGQRQRTWQVVWRDHGKTASPNAGWPMA
AMAGALDTQLIKIGHYALGDGLTQPDPALMQTARQLARRVMFLVVVGLAMGAWGAEQVNAEAQRFKAIG

Sequences:

>Translated_309_residues
MAKRVLGGLLALACDALLPELPNQLHPVVWMGKWIKRGEQFAPSNEADRLVWGAIWLGAGMGLSAGLAARIPKHPLAQAL
AAQSLLAYRALDRAVGEVQTALVADDLAEARRLLSWHLVSRDTAELSPSEVAAAAIESLAENLSDSVIAPLFWYLAAGLP
GLAAYRMSNTFDAMWGYRNQRFEYLGKVAARCDDALNLVPARLTAGLLWLVAHGQRQRTWQVVWRDHGKTASPNAGWPMA
AMAGALDTQLIKIGHYALGDGLTQPDPALMQTARQLARRVMFLVVVGLAMGAWGAEQVNAEAQRFKAIG
>Mature_308_residues
AKRVLGGLLALACDALLPELPNQLHPVVWMGKWIKRGEQFAPSNEADRLVWGAIWLGAGMGLSAGLAARIPKHPLAQALA
AQSLLAYRALDRAVGEVQTALVADDLAEARRLLSWHLVSRDTAELSPSEVAAAAIESLAENLSDSVIAPLFWYLAAGLPG
LAAYRMSNTFDAMWGYRNQRFEYLGKVAARCDDALNLVPARLTAGLLWLVAHGQRQRTWQVVWRDHGKTASPNAGWPMAA
MAGALDTQLIKIGHYALGDGLTQPDPALMQTARQLARRVMFLVVVGLAMGAWGAEQVNAEAQRFKAIG

Specific function: Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group [H]

COG id: COG1270

COG function: function code H; Cobalamin biosynthesis protein CobD/CbiB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CobD/CbiB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004485 [H]

Pfam domain/function: PF03186 CobD_Cbib [H]

EC number: NA

Molecular weight: Translated: 33402; Mature: 33271

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKRVLGGLLALACDALLPELPNQLHPVVWMGKWIKRGEQFAPSNEADRLVWGAIWLGAG
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC
MGLSAGLAARIPKHPLAQALAAQSLLAYRALDRAVGEVQTALVADDLAEARRLLSWHLVS
CCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RDTAELSPSEVAAAAIESLAENLSDSVIAPLFWYLAAGLPGLAAYRMSNTFDAMWGYRNQ
CCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHCCHHH
RFEYLGKVAARCDDALNLVPARLTAGLLWLVAHGQRQRTWQVVWRDHGKTASPNAGWPMA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCHH
AMAGALDTQLIKIGHYALGDGLTQPDPALMQTARQLARRVMFLVVVGLAMGAWGAEQVNA
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
EAQRFKAIG
HHHHHHCCC
>Mature Secondary Structure 
AKRVLGGLLALACDALLPELPNQLHPVVWMGKWIKRGEQFAPSNEADRLVWGAIWLGAG
CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC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HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA