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The map label for this gene is yvrC [H]

Identifier: 159897585

GI number: 159897585

Start: 1204973

End: 1205998

Strand: Reverse

Name: yvrC [H]

Synonym: Haur_1056

Alternate gene names: 159897585

Gene position: 1205998-1204973 (Counterclockwise)

Preceding gene: 159897586

Following gene: 159897584

Centisome position: 19.0

GC content: 52.05

Gene sequence:

>1026_bases
ATGACCAAGGTTCGATTTAGCCGATTTTTGAGCGTTTTCTTGTTGTTGGGCAGCCTTGTAGCTTGTGACGCTGCCGAAAA
TGGCGTGACCCAATTACCAGCGACAACTGTGCCGCCAACCGCCACAACTGATAGTGCTGCCGTAGCACCAACCGCCGAAT
TGACTCCAACTGAAACTAGTAGCATCAGCTATCCTTTGACGATCAAGGATAGCCTCGGGCGCGAAGTAACTCTACAAGCA
GCACCCAGCCGGATCGTCTCGTTAGCGCCATCGAATACCGAAATTCTGTTTGCGGTTGGCGCGGGCGATGCGTTGGTCGG
CGTGACCAAATATTGCAATTATCCCGAAGCAGCCAAAAGCATCGATCAAATTGGCGGCTTCTCGGCCAAAACGATTAGCC
TTGAAACCATCGTTGCGCTCAAGCCCGATGTTGTGTTTTCGGGCGATGAAAGCCAACAAATCGTGATCGATGCCCTCACC
CAAGCCAATATTCCGGTGATCGCGATCAAAGCTGAAACCTTCGAGGCGGTCTATCAAAACATCAATTTGATTGGTCAAGC
GACGAATCATCCAACTGAGGCGGCCCAAGTTGTGGCCGAGATGCAAGCCCGCATCGATGCAGTAACCGCCAAAACCAGCA
CGCTGGCGGCTGCCGATAAATTAAGCGTGTTCTATGAAGTTTATGATGAGCCATTGATGACCGCTGGCCCGCAAACCTTT
ATCGGCCAAATGCTTGAACTCGCTGGCGCAACCAATATTTTTGCCGATGTGAGCGAAGAGTATCCCGAAATCAGCGCCGA
AGAAGTGGTCAATCGGCAGCCAGCGGTGATCATCGGGCCTGAATCGCATGGCGATAAACTGACGATTGATCTGATCGCCC
AACGCCCAGGCTGGGGTGCAATCAAGGCAGTCAAGGAGGGCAAGATCGTCGTTTTGAATGGTGATATGCTTTCGCGGCCA
GGCCCACGCTTGGCCGATGCCTTAGAAGCACTGAGCCAAGCCTTGTATCCAGAATTGTTTAACTAA

Upstream 100 bases:

>100_bases
ATAGCCTATAGCCCATAGCCTCGACCCTTCGTGCCCTTCGTGTCCTTCGTGGATCAATAGCTCTCTCTTTCATCCTTCTA
TAAAATGGGGTTCAATTCAC

Downstream 100 bases:

>100_bases
GCCTGATTGAGCTTAATCAGCGTTTGCCAAGCAGCGTCAGCAATGGCGCTGCTTGCTCCAGTTTTGAAGGGTTGGTTTTG
GCACGATTAATATCCAAGCC

Product: periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MTKVRFSRFLSVFLLLGSLVACDAAENGVTQLPATTVPPTATTDSAAVAPTAELTPTETSSISYPLTIKDSLGREVTLQA
APSRIVSLAPSNTEILFAVGAGDALVGVTKYCNYPEAAKSIDQIGGFSAKTISLETIVALKPDVVFSGDESQQIVIDALT
QANIPVIAIKAETFEAVYQNINLIGQATNHPTEAAQVVAEMQARIDAVTAKTSTLAAADKLSVFYEVYDEPLMTAGPQTF
IGQMLELAGATNIFADVSEEYPEISAEEVVNRQPAVIIGPESHGDKLTIDLIAQRPGWGAIKAVKEGKIVVLNGDMLSRP
GPRLADALEALSQALYPELFN

Sequences:

>Translated_341_residues
MTKVRFSRFLSVFLLLGSLVACDAAENGVTQLPATTVPPTATTDSAAVAPTAELTPTETSSISYPLTIKDSLGREVTLQA
APSRIVSLAPSNTEILFAVGAGDALVGVTKYCNYPEAAKSIDQIGGFSAKTISLETIVALKPDVVFSGDESQQIVIDALT
QANIPVIAIKAETFEAVYQNINLIGQATNHPTEAAQVVAEMQARIDAVTAKTSTLAAADKLSVFYEVYDEPLMTAGPQTF
IGQMLELAGATNIFADVSEEYPEISAEEVVNRQPAVIIGPESHGDKLTIDLIAQRPGWGAIKAVKEGKIVVLNGDMLSRP
GPRLADALEALSQALYPELFN
>Mature_340_residues
TKVRFSRFLSVFLLLGSLVACDAAENGVTQLPATTVPPTATTDSAAVAPTAELTPTETSSISYPLTIKDSLGREVTLQAA
PSRIVSLAPSNTEILFAVGAGDALVGVTKYCNYPEAAKSIDQIGGFSAKTISLETIVALKPDVVFSGDESQQIVIDALTQ
ANIPVIAIKAETFEAVYQNINLIGQATNHPTEAAQVVAEMQARIDAVTAKTSTLAAADKLSVFYEVYDEPLMTAGPQTFI
GQMLELAGATNIFADVSEEYPEISAEEVVNRQPAVIIGPESHGDKLTIDLIAQRPGWGAIKAVKEGKIVVLNGDMLSRPG
PRLADALEALSQALYPELFN

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786353, Length=266, Percent_Identity=31.5789473684211, Blast_Score=111, Evalue=8e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 36021; Mature: 35890

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKVRFSRFLSVFLLLGSLVACDAAENGVTQLPATTVPPTATTDSAAVAPTAELTPTETS
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SISYPLTIKDSLGREVTLQAAPSRIVSLAPSNTEILFAVGAGDALVGVTKYCNYPEAAKS
CEEEEEEECCCCCCEEEEEECCCEEEEECCCCCEEEEEECCCCHHHHHHHHCCCCHHHHH
IDQIGGFSAKTISLETIVALKPDVVFSGDESQQIVIDALTQANIPVIAIKAETFEAVYQN
HHHHCCCCEEEEEEEEEEEECCCEEECCCCCCEEEEEEHHCCCCCEEEEEHHHHHHHHHC
INLIGQATNHPTEAAQVVAEMQARIDAVTAKTSTLAAADKLSVFYEVYDEPLMTAGPQTF
CCEEEECCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHCCCCHHH
IGQMLELAGATNIFADVSEEYPEISAEEVVNRQPAVIIGPESHGDKLTIDLIAQRPGWGA
HHHHHHHHCCHHHHHHHHHHCCCCCHHHHHCCCCEEEECCCCCCCEEEEEEEECCCCCCH
IKAVKEGKIVVLNGDMLSRPGPRLADALEALSQALYPELFN
HHEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TKVRFSRFLSVFLLLGSLVACDAAENGVTQLPATTVPPTATTDSAAVAPTAELTPTETS
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SISYPLTIKDSLGREVTLQAAPSRIVSLAPSNTEILFAVGAGDALVGVTKYCNYPEAAKS
CEEEEEEECCCCCCEEEEEECCCEEEEECCCCCEEEEEECCCCHHHHHHHHCCCCHHHHH
IDQIGGFSAKTISLETIVALKPDVVFSGDESQQIVIDALTQANIPVIAIKAETFEAVYQN
HHHHCCCCEEEEEEEEEEEECCCEEECCCCCCEEEEEEHHCCCCCEEEEEHHHHHHHHHC
INLIGQATNHPTEAAQVVAEMQARIDAVTAKTSTLAAADKLSVFYEVYDEPLMTAGPQTF
CCEEEECCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHCCCCHHH
IGQMLELAGATNIFADVSEEYPEISAEEVVNRQPAVIIGPESHGDKLTIDLIAQRPGWGA
HHHHHHHHCCHHHHHHHHHHCCCCCHHHHHCCCCEEEECCCCCCCEEEEEEEECCCCCCH
IKAVKEGKIVVLNGDMLSRPGPRLADALEALSQALYPELFN
HHEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]