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The map label for this gene is rfbA [H]

Identifier: 159897563

GI number: 159897563

Start: 1180167

End: 1181015

Strand: Reverse

Name: rfbA [H]

Synonym: Haur_1034

Alternate gene names: 159897563

Gene position: 1181015-1180167 (Counterclockwise)

Preceding gene: 159897564

Following gene: 159897562

Centisome position: 18.61

GC content: 47.35

Gene sequence:

>849_bases
GTGCAAAGAGCCTCCACGACGTTACAAACAACCCCCATCACGCGGATAGAACCATCCAAAGGCTGGGTTTCGCTGCAATT
ACGCGAACTCTGGGCCTACCGTGAATTACTGTTTTTTCTGATTTGGCGCGATGTTAAAGTTCGCTACAAACAGACCGTGC
TTGGCGCAGCTTGGGCCATCATCCAACCAGTTTTTTCGATGATTGTCTTTACGCTGATTTTTGGCAGGTTGGCCAAATTG
CCTTCCGATGGCATTGCCTACGAAGCTTTTTCGATTACGGCGCTTGTACCATGGGCGTTGTTTGCCAACGCACTCAGCCA
AGGCTCAAATAGCTTGGTTGGTAACGCCAACTTAATCAAAAAAGTCTATTTTCCACGATTAACTGTGCCAATTTCAACTG
TGCTTGGCGGCTTAGTCGATTTTGCGATTGCCTTTGTAGTGATGTTTGGCATGCTGCTGTGGTTTGGCATCACGCCAAGC
ATCCGTATGTTGGCGTTGCCATTATTCATTATGCTGGTGCTAATTACTGGTTTAGGCGTGAGTTTATGGCTAGCAGCATT
AAATGTGCAGTTTCGCGATATTCGTTATGTCATTCCGTTTATGGCCCAGCTTTGGCAATATGGCAGCCCGGTAGCCTACT
CCAGCAGCTTGATTCCTCAAGAATGGCGCTGGTTGTATGGCTTGAACCCCATGGTTGGGGTGATTGATGGCTTTCGTTGG
TCGATGCTTGGTACAGGCCAAATTAGTTGGTCAAGTATGCTGCCATCGGTGGGCATTGCCTTATTCCTGCTGTTTACCGG
AGCTTTATACTTCCGCCGAATTGAAAAACAATTTGCAGATATGGTGTAA

Upstream 100 bases:

>100_bases
TAGAGCCTAGAGCCGTATCCTCTTCGTGCACTTCGTAAATCAAAACCCAATATGCTATAATGGCTTGGTCTGTTAACAAA
CATTGTGTGGTGAGAAAACA

Downstream 100 bases:

>100_bases
CAATGAGCGAGATTGCGATTCAGGTTGAGCATTTAAGTAAGCAATTTCGCATTGGGGCGAATGCATTTCAAAAAACCTTT
CGCGAAACAGTGTCGGATAT

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MQRASTTLQTTPITRIEPSKGWVSLQLRELWAYRELLFFLIWRDVKVRYKQTVLGAAWAIIQPVFSMIVFTLIFGRLAKL
PSDGIAYEAFSITALVPWALFANALSQGSNSLVGNANLIKKVYFPRLTVPISTVLGGLVDFAIAFVVMFGMLLWFGITPS
IRMLALPLFIMLVLITGLGVSLWLAALNVQFRDIRYVIPFMAQLWQYGSPVAYSSSLIPQEWRWLYGLNPMVGVIDGFRW
SMLGTGQISWSSMLPSVGIALFLLFTGALYFRRIEKQFADMV

Sequences:

>Translated_282_residues
MQRASTTLQTTPITRIEPSKGWVSLQLRELWAYRELLFFLIWRDVKVRYKQTVLGAAWAIIQPVFSMIVFTLIFGRLAKL
PSDGIAYEAFSITALVPWALFANALSQGSNSLVGNANLIKKVYFPRLTVPISTVLGGLVDFAIAFVVMFGMLLWFGITPS
IRMLALPLFIMLVLITGLGVSLWLAALNVQFRDIRYVIPFMAQLWQYGSPVAYSSSLIPQEWRWLYGLNPMVGVIDGFRW
SMLGTGQISWSSMLPSVGIALFLLFTGALYFRRIEKQFADMV
>Mature_282_residues
MQRASTTLQTTPITRIEPSKGWVSLQLRELWAYRELLFFLIWRDVKVRYKQTVLGAAWAIIQPVFSMIVFTLIFGRLAKL
PSDGIAYEAFSITALVPWALFANALSQGSNSLVGNANLIKKVYFPRLTVPISTVLGGLVDFAIAFVVMFGMLLWFGITPS
IRMLALPLFIMLVLITGLGVSLWLAALNVQFRDIRYVIPFMAQLWQYGSPVAYSSSLIPQEWRWLYGLNPMVGVIDGFRW
SMLGTGQISWSSMLPSVGIALFLLFTGALYFRRIEKQFADMV

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 31824; Mature: 31824

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRASTTLQTTPITRIEPSKGWVSLQLRELWAYRELLFFLIWRDVKVRYKQTVLGAAWAI
CCCCCCCEEECCCCEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IQPVFSMIVFTLIFGRLAKLPSDGIAYEAFSITALVPWALFANALSQGSNSLVGNANLIK
HHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
KVYFPRLTVPISTVLGGLVDFAIAFVVMFGMLLWFGITPSIRMLALPLFIMLVLITGLGV
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
SLWLAALNVQFRDIRYVIPFMAQLWQYGSPVAYSSSLIPQEWRWLYGLNPMVGVIDGFRW
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHHCCCHH
SMLGTGQISWSSMLPSVGIALFLLFTGALYFRRIEKQFADMV
HEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQRASTTLQTTPITRIEPSKGWVSLQLRELWAYRELLFFLIWRDVKVRYKQTVLGAAWAI
CCCCCCCEEECCCCEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IQPVFSMIVFTLIFGRLAKLPSDGIAYEAFSITALVPWALFANALSQGSNSLVGNANLIK
HHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
KVYFPRLTVPISTVLGGLVDFAIAFVVMFGMLLWFGITPSIRMLALPLFIMLVLITGLGV
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
SLWLAALNVQFRDIRYVIPFMAQLWQYGSPVAYSSSLIPQEWRWLYGLNPMVGVIDGFRW
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHHCCCHH
SMLGTGQISWSSMLPSVGIALFLLFTGALYFRRIEKQFADMV
HEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7533882 [H]