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The map label for this gene is rfbB [H]

Identifier: 159897562

GI number: 159897562

Start: 1178881

End: 1180164

Strand: Reverse

Name: rfbB [H]

Synonym: Haur_1033

Alternate gene names: 159897562

Gene position: 1180164-1178881 (Counterclockwise)

Preceding gene: 159897563

Following gene: 159897561

Centisome position: 18.6

GC content: 51.71

Gene sequence:

>1284_bases
ATGAGCGAGATTGCGATTCAGGTTGAGCATTTAAGTAAGCAATTTCGCATTGGGGCGAATGCATTTCAAAAAACCTTTCG
CGAAACAGTGTCGGATATGATGTTAGCGCCAGCCCGCCGCTTGCGTTCAGCCATGCGTGGTCAAGGCAGCCAAGCTGCGA
CCAAGGAATTTTGGGCGCTGCGCGATGTTTCATTCGATGTTAAGCAGGGCGAAGTCGTTGGGATTATCGGCCACAACGGC
GCGGGCAAAAGTACCTTATTGAAAGTGCTTTCGCGGATTACCGAGCCAACCACTGGCTCAGCCTTGATTCGTGGGCGGGT
TGGCACGCTGCTTGAAGTTGGCACGGGTTTTCATCCCGACCTCACAGGTCGCGAAAATATGTATCTCAACGGAGCGATTT
TGGGCATGAGCCGCGCCGAAATTAACCGTAAGTTCGATGAAATTGTGGCCTTTGCTGAGGTCGAGCAATTTATCGACACC
ATGGTTAAACATTATTCCAGCGGCATGTATTTGCGCTTAGCCTTTGCGGTGGCCGCCCACCTTGAGCCAGAAATTCTGAT
TGTCGATGAGGTTCTGGCGGTTGGCGATGCTCAATTTCAAAAGAAATGCTTGGGCAAAATGGGCGAAGTTGCCCAGAATG
GCCGGACTGTGCTCTTTGTAAGCCACAATATGGCGGCAATTCGCAGCTTATGTCAACGAGTGGTTTGGCTCAACCAAGGC
ACTGTGCTCAAAGATGGCCCTTCGGCAGCAATTGTCAACGAATATTTGATGCAAACCGTCACTTCAAGCAGCTCTCGCGT
CGATCTGCGCGAGGCAACTCGCCATTATGATTATGGTAAGCGCTTTAAGATTAATGACCTGACCTTTAACCACGGCGAGC
CAATTTTGCATGGCGAGGTGCTCAACGTCAGCTTCAACTACGAAGCCTATGCCGATGTCTATGGCGTGTCGTTTGGCTAT
GGGTTTTCCTCACTCGAAGGCACGCGCCTAATGACGGTCGATAGCGATTTGAATGCACCACGCTACCTTATTAAGCGCGG
CCAGCACGGCCAACTCACCAGTACCCTCGATACGCTCAACTTGCAACCTGGCATCTATTTGCTTGATGTTGGGGTGCGTT
CAGGTGATGGTAGTGCGTTGGATTACCTGCCTGGATGTGCTCAGGTTGAAATTTTGCCTGGCCCGACTACCCCAGCTTCA
ATGAGCCGCTTGGATTATGCCGGTAATGTACGGCTTGGCGGGCAGTGGCAATGGCCTGAGACGGCCCAAGAGGATCGCGA
TTAA

Upstream 100 bases:

>100_bases
CAAGTATGCTGCCATCGGTGGGCATTGCCTTATTCCTGCTGTTTACCGGAGCTTTATACTTCCGCCGAATTGAAAAACAA
TTTGCAGATATGGTGTAACA

Downstream 100 bases:

>100_bases
TGCAACCATTAAAGATTCTGGTGTTGACCAGCTTATTTCCACCGCACTATATCGGTGGCTACGAGGTTGGTTGTGGCGAT
GTGGTTGCTGGTTTACGCGC

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 426

Protein sequence:

>427_residues
MSEIAIQVEHLSKQFRIGANAFQKTFRETVSDMMLAPARRLRSAMRGQGSQAATKEFWALRDVSFDVKQGEVVGIIGHNG
AGKSTLLKVLSRITEPTTGSALIRGRVGTLLEVGTGFHPDLTGRENMYLNGAILGMSRAEINRKFDEIVAFAEVEQFIDT
MVKHYSSGMYLRLAFAVAAHLEPEILIVDEVLAVGDAQFQKKCLGKMGEVAQNGRTVLFVSHNMAAIRSLCQRVVWLNQG
TVLKDGPSAAIVNEYLMQTVTSSSSRVDLREATRHYDYGKRFKINDLTFNHGEPILHGEVLNVSFNYEAYADVYGVSFGY
GFSSLEGTRLMTVDSDLNAPRYLIKRGQHGQLTSTLDTLNLQPGIYLLDVGVRSGDGSALDYLPGCAQVEILPGPTTPAS
MSRLDYAGNVRLGGQWQWPETAQEDRD

Sequences:

>Translated_427_residues
MSEIAIQVEHLSKQFRIGANAFQKTFRETVSDMMLAPARRLRSAMRGQGSQAATKEFWALRDVSFDVKQGEVVGIIGHNG
AGKSTLLKVLSRITEPTTGSALIRGRVGTLLEVGTGFHPDLTGRENMYLNGAILGMSRAEINRKFDEIVAFAEVEQFIDT
MVKHYSSGMYLRLAFAVAAHLEPEILIVDEVLAVGDAQFQKKCLGKMGEVAQNGRTVLFVSHNMAAIRSLCQRVVWLNQG
TVLKDGPSAAIVNEYLMQTVTSSSSRVDLREATRHYDYGKRFKINDLTFNHGEPILHGEVLNVSFNYEAYADVYGVSFGY
GFSSLEGTRLMTVDSDLNAPRYLIKRGQHGQLTSTLDTLNLQPGIYLLDVGVRSGDGSALDYLPGCAQVEILPGPTTPAS
MSRLDYAGNVRLGGQWQWPETAQEDRD
>Mature_426_residues
SEIAIQVEHLSKQFRIGANAFQKTFRETVSDMMLAPARRLRSAMRGQGSQAATKEFWALRDVSFDVKQGEVVGIIGHNGA
GKSTLLKVLSRITEPTTGSALIRGRVGTLLEVGTGFHPDLTGRENMYLNGAILGMSRAEINRKFDEIVAFAEVEQFIDTM
VKHYSSGMYLRLAFAVAAHLEPEILIVDEVLAVGDAQFQKKCLGKMGEVAQNGRTVLFVSHNMAAIRSLCQRVVWLNQGT
VLKDGPSAAIVNEYLMQTVTSSSSRVDLREATRHYDYGKRFKINDLTFNHGEPILHGEVLNVSFNYEAYADVYGVSFGYG
FSSLEGTRLMTVDSDLNAPRYLIKRGQHGQLTSTLDTLNLQPGIYLLDVGVRSGDGSALDYLPGCAQVEILPGPTTPASM
SRLDYAGNVRLGGQWQWPETAQEDRD

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbA [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI6005701, Length=231, Percent_Identity=29.8701298701299, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI153792144, Length=228, Percent_Identity=26.3157894736842, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI27436953, Length=221, Percent_Identity=27.6018099547511, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI27477115, Length=225, Percent_Identity=28.4444444444444, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI30795238, Length=257, Percent_Identity=26.0700389105058, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI27881501, Length=257, Percent_Identity=26.0700389105058, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI105990541, Length=185, Percent_Identity=29.1891891891892, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI31657092, Length=212, Percent_Identity=27.3584905660377, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI45446740, Length=195, Percent_Identity=27.6923076923077, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI47078218, Length=195, Percent_Identity=27.6923076923077, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI27262624, Length=196, Percent_Identity=26.0204081632653, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI27262626, Length=196, Percent_Identity=26.0204081632653, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI116734710, Length=261, Percent_Identity=22.9885057471264, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI150417984, Length=213, Percent_Identity=25.3521126760563, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI9961252, Length=197, Percent_Identity=26.9035532994924, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI4505771, Length=197, Percent_Identity=26.9035532994924, Blast_Score=67, Evalue=4e-11,
Organism=Escherichia coli, GI1786398, Length=313, Percent_Identity=24.6006389776358, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87081709, Length=208, Percent_Identity=26.9230769230769, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787089, Length=211, Percent_Identity=27.0142180094787, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1787029, Length=210, Percent_Identity=28.0952380952381, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1789032, Length=241, Percent_Identity=24.4813278008299, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788225, Length=214, Percent_Identity=25.7009345794392, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI48994943, Length=210, Percent_Identity=26.1904761904762, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1790467, Length=217, Percent_Identity=25.3456221198157, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788210, Length=206, Percent_Identity=31.0679611650485, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI87081791, Length=204, Percent_Identity=22.5490196078431, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788761, Length=204, Percent_Identity=25.9803921568627, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87082267, Length=222, Percent_Identity=24.7747747747748, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1790525, Length=212, Percent_Identity=28.3018867924528, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081782, Length=205, Percent_Identity=25.8536585365854, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788450, Length=242, Percent_Identity=24.3801652892562, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790190, Length=282, Percent_Identity=25.886524822695, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1789672, Length=208, Percent_Identity=25, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI48994997, Length=214, Percent_Identity=29.9065420560748, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1788897, Length=228, Percent_Identity=25.8771929824561, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1786872, Length=214, Percent_Identity=27.5700934579439, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI48995001, Length=199, Percent_Identity=24.6231155778894, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1786319, Length=205, Percent_Identity=23.4146341463415, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87081834, Length=201, Percent_Identity=26.3681592039801, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI145693107, Length=299, Percent_Identity=22.742474916388, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1787370, Length=203, Percent_Identity=23.6453201970443, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787105, Length=218, Percent_Identity=22.0183486238532, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=207, Percent_Identity=26.5700483091787, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71983516, Length=211, Percent_Identity=27.9620853080569, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71983523, Length=211, Percent_Identity=27.9620853080569, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71983510, Length=211, Percent_Identity=27.9620853080569, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI193209708, Length=213, Percent_Identity=27.2300469483568, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193202349, Length=221, Percent_Identity=25.3393665158371, Blast_Score=72, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17565586, Length=210, Percent_Identity=23.8095238095238, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17510237, Length=208, Percent_Identity=24.0384615384615, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193208177, Length=211, Percent_Identity=27.9620853080569, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI116007184, Length=191, Percent_Identity=27.7486910994764, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI221500365, Length=191, Percent_Identity=27.7486910994764, Blast_Score=80, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24666092, Length=207, Percent_Identity=28.0193236714976, Blast_Score=79, Evalue=6e-15,
Organism=Drosophila melanogaster, GI221512771, Length=206, Percent_Identity=26.2135922330097, Blast_Score=79, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24643674, Length=212, Percent_Identity=23.5849056603774, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28573571, Length=201, Percent_Identity=25.8706467661692, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28573573, Length=201, Percent_Identity=25.8706467661692, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI17136662, Length=206, Percent_Identity=28.6407766990291, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 47022; Mature: 46891

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEIAIQVEHLSKQFRIGANAFQKTFRETVSDMMLAPARRLRSAMRGQGSQAATKEFWAL
CCCCEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RDVSFDVKQGEVVGIIGHNGAGKSTLLKVLSRITEPTTGSALIRGRVGTLLEVGTGFHPD
HCCCEECCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCCC
LTGRENMYLNGAILGMSRAEINRKFDEIVAFAEVEQFIDTMVKHYSSGMYLRLAFAVAAH
CCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHH
LEPEILIVDEVLAVGDAQFQKKCLGKMGEVAQNGRTVLFVSHNMAAIRSLCQRVVWLNQG
CCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCC
TVLKDGPSAAIVNEYLMQTVTSSSSRVDLREATRHYDYGKRFKINDLTFNHGEPILHGEV
EEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEECEEECCCCCEEECEE
LNVSFNYEAYADVYGVSFGYGFSSLEGTRLMTVDSDLNAPRYLIKRGQHGQLTSTLDTLN
EEEEECCEEHHHEEECEECCCCCCCCCCEEEEECCCCCCCHHHHHCCCCCCHHHHHHHCC
LQPGIYLLDVGVRSGDGSALDYLPGCAQVEILPGPTTPASMSRLDYAGNVRLGGQWQWPE
CCCCEEEEEEEEECCCCCCHHCCCCCCEEEEECCCCCCHHHHHCCCCCCEEECCEECCCC
TAQEDRD
CCCCCCC
>Mature Secondary Structure 
SEIAIQVEHLSKQFRIGANAFQKTFRETVSDMMLAPARRLRSAMRGQGSQAATKEFWAL
CCCEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RDVSFDVKQGEVVGIIGHNGAGKSTLLKVLSRITEPTTGSALIRGRVGTLLEVGTGFHPD
HCCCEECCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCCC
LTGRENMYLNGAILGMSRAEINRKFDEIVAFAEVEQFIDTMVKHYSSGMYLRLAFAVAAH
CCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHH
LEPEILIVDEVLAVGDAQFQKKCLGKMGEVAQNGRTVLFVSHNMAAIRSLCQRVVWLNQG
CCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCC
TVLKDGPSAAIVNEYLMQTVTSSSSRVDLREATRHYDYGKRFKINDLTFNHGEPILHGEV
EEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEECEEECCCCCEEECEE
LNVSFNYEAYADVYGVSFGYGFSSLEGTRLMTVDSDLNAPRYLIKRGQHGQLTSTLDTLN
EEEEECCEEHHHEEECEECCCCCCCCCCEEEEECCCCCCCHHHHHCCCCCCHHHHHHHCC
LQPGIYLLDVGVRSGDGSALDYLPGCAQVEILPGPTTPASMSRLDYAGNVRLGGQWQWPE
CCCCEEEEEEEEECCCCCCHHCCCCCCEEEEECCCCCCHHHHHCCCCCCEEECCEECCCC
TAQEDRD
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]