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The map label for this gene is yciR [C]

Identifier: 159897514

GI number: 159897514

Start: 1128387

End: 1130501

Strand: Reverse

Name: yciR [C]

Synonym: Haur_0985

Alternate gene names: 159897514

Gene position: 1130501-1128387 (Counterclockwise)

Preceding gene: 159897515

Following gene: 159897507

Centisome position: 17.81

GC content: 45.72

Gene sequence:

>2115_bases
ATGAGTAAAGCAAGCATTGTCATTGTTGAAGATGAAGTAATTGTGGCCTTGGATATGGCGCAAGCACTCAAGGCGGCGGG
CTATAACGTGATTGGCAGTTTTAGTTGCGGTGAGGCCGCGCTCGAATTTATTGCCGAACAATGCCCCGATTTGATCGTGA
TGGACATTCACTTGCAAGGCCAACTTGATGGCATCAGCACTGCCGAACAGATTCAAAAACGTTATGGCTTGCCGATTATT
TATCTTACCGCCTACTCTGACTCGGAAACCTTGAGTCGCGCCAAGGCAACCGAACCGTATGCCTACTTGGTCAAACCATT
TGAAGATCGTGATTTGCTGAGTGCCATCGAAATGGGTTTGTATCGCCATCGCGTGGATCAGCGCTTGCGGCGCATGGAAC
GTTTATATTCAAGCACCTTAAACAGCGTTGATGATGCAATTATTACAACAGATATCTATGGCTTGATTAAATTTGCCAAT
CCGACCGCCAGTAGCTTGTTAAATCGACCGAATGATGCATTAATTGGCCAATTTATAGGCGATGTAGTTCAGCTCCTTGA
TCGCGAAACCAAAATAACCTATCAATTTGATTTGCCCTATTTAATCCAACAAGCTAATCATCATATGTTATTACCACGCC
AGATTCTGGTGAACGATCAAGCTAAATTTGTGGTTGCGCCAAGTATTTCGCAAATTCGCGAAGAAGATGAAGCGATTGCT
GGAATTGTCTTAGTGCTGCGTGATATGCGCGATCTTGATGCAGCTGAGGAGCATATTCGCCATCAAGCCTTGCACGATGC
CCTAACTGGCTTGGCCAATCGGAATGTTTTTATCAATCGTTTGCAATATATTCTTGATCATTATCATTTACACCATCATC
ATGCCGTACTATTTATCGATCTTGATCGATTCAAGATTATCAATGATAGTTTAGGCCATATTGTTGGCGACAAATTATTA
ATTCAAGTTGGTCAACGCTTAGAGCGTTGTATTCGCTCCCATGATTTAGTAGCACGGCTGGGCGGCGATGAATTTACCAT
TTTGCTTGATGGCGTTAATGATATCCATGATGTTCTACGAGTTACCGATCGTTTATTAAGTGTGGTTGCCGAGCCATATC
ATATTGATGGCTATAAAGTGTTTACCGCAGCCAGCATTGGAATTGTGGTGATTGACGATCATTACAAGCATTATCACGAA
GTGTTGCGCGATGTGGATAGCGCGATGTATCGGGCTAAATCGCAAGGTCGTGGTTGTCGCGCCGTCTTTGACGAAGAGAT
GCATGTTGAGGCCTTGCGTACATTGCAACTTGAGGTCGAATTACGCCGCGCAGTTGAGCGTGACGAATTGTGCTTGCACT
ATCAGCCAATTATCAAACTAGCCACGGGCGAGTTATCGGGCTTTGAGGCGTTGTTGCGTTGGAATCACCCAACTCAAGGC
GTGATTGGCCCAGCCTCGTTTTTTGCCATTGCCGAAGAAACTGGGATTTTAGCCCAAATTGGCTGGAAGTTGTTACGCGA
ATCGTGCCAACAAATTTGTGCTTGGCAAAACGAATTTCAGTTTCATCCACCCTTGGAATTGAGCGTTAATTTTACCCATC
GCCAATTTTTCCAAGCCAATCTGATTCAGCAAGTTCAAAGCATTTTAGCTGAAACTGGCATGCCTGCACGGCATTTGTGC
GCCGAAATTACAGAAGGCGTGATGATGCAAAGTAATCGTGCGGTCGAAGTGATGCACGAATTGCATGATTTGGGCGTGCA
AGTGCATATCGATGATTTTGGCACTGGTTATGCCTCGCTCAGTTTGTTGCATAGTGCCCCAATCGATGTTTTAAAGATTG
ATCGGACGTTTATTCAGCCCGAAAGCGGAGCCAGCAAGCACTCAATCGCCCAGTTAATTAGCTTGATGGCACGATCGTTG
GGTTGTGCCGTGGTCGCTGAGGGCGTGGAAGATGCCCAAACTGCCCAGATGTTGATCGAAATGGGTTGCGATTTTGGTCA
AGGCTGGTGGTATTCCAAAGCATTACCACCAGAAGAGGCGCGGGTATTAATTCGCAACTTTGCCCAAGGCACAGTAATGG
TCCCGGTTCCACTGAATGCCAAAGTTGCTCACTAG

Upstream 100 bases:

>100_bases
TGCATGCCCTGATTCGCCAACTTGGTGCCTCGATTCAGCAGCTTTCAACGGATGGCACTGTGTTTAAGTTAACAATTCCA
CGTAAATAAAGGACCAGCAT

Downstream 100 bases:

>100_bases
GGAGACTTGCAGTATCAACCCTTCTCCCACTTGGTGGGAGAAGGGCGTTCGATCGAGTGATTGCCCGTTGGAAATGGGCA
TGCGAAAGAGAAAAAGCTAT

Product: response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 704; Mature: 703

Protein sequence:

>704_residues
MSKASIVIVEDEVIVALDMAQALKAAGYNVIGSFSCGEAALEFIAEQCPDLIVMDIHLQGQLDGISTAEQIQKRYGLPII
YLTAYSDSETLSRAKATEPYAYLVKPFEDRDLLSAIEMGLYRHRVDQRLRRMERLYSSTLNSVDDAIITTDIYGLIKFAN
PTASSLLNRPNDALIGQFIGDVVQLLDRETKITYQFDLPYLIQQANHHMLLPRQILVNDQAKFVVAPSISQIREEDEAIA
GIVLVLRDMRDLDAAEEHIRHQALHDALTGLANRNVFINRLQYILDHYHLHHHHAVLFIDLDRFKIINDSLGHIVGDKLL
IQVGQRLERCIRSHDLVARLGGDEFTILLDGVNDIHDVLRVTDRLLSVVAEPYHIDGYKVFTAASIGIVVIDDHYKHYHE
VLRDVDSAMYRAKSQGRGCRAVFDEEMHVEALRTLQLEVELRRAVERDELCLHYQPIIKLATGELSGFEALLRWNHPTQG
VIGPASFFAIAEETGILAQIGWKLLRESCQQICAWQNEFQFHPPLELSVNFTHRQFFQANLIQQVQSILAETGMPARHLC
AEITEGVMMQSNRAVEVMHELHDLGVQVHIDDFGTGYASLSLLHSAPIDVLKIDRTFIQPESGASKHSIAQLISLMARSL
GCAVVAEGVEDAQTAQMLIEMGCDFGQGWWYSKALPPEEARVLIRNFAQGTVMVPVPLNAKVAH

Sequences:

>Translated_704_residues
MSKASIVIVEDEVIVALDMAQALKAAGYNVIGSFSCGEAALEFIAEQCPDLIVMDIHLQGQLDGISTAEQIQKRYGLPII
YLTAYSDSETLSRAKATEPYAYLVKPFEDRDLLSAIEMGLYRHRVDQRLRRMERLYSSTLNSVDDAIITTDIYGLIKFAN
PTASSLLNRPNDALIGQFIGDVVQLLDRETKITYQFDLPYLIQQANHHMLLPRQILVNDQAKFVVAPSISQIREEDEAIA
GIVLVLRDMRDLDAAEEHIRHQALHDALTGLANRNVFINRLQYILDHYHLHHHHAVLFIDLDRFKIINDSLGHIVGDKLL
IQVGQRLERCIRSHDLVARLGGDEFTILLDGVNDIHDVLRVTDRLLSVVAEPYHIDGYKVFTAASIGIVVIDDHYKHYHE
VLRDVDSAMYRAKSQGRGCRAVFDEEMHVEALRTLQLEVELRRAVERDELCLHYQPIIKLATGELSGFEALLRWNHPTQG
VIGPASFFAIAEETGILAQIGWKLLRESCQQICAWQNEFQFHPPLELSVNFTHRQFFQANLIQQVQSILAETGMPARHLC
AEITEGVMMQSNRAVEVMHELHDLGVQVHIDDFGTGYASLSLLHSAPIDVLKIDRTFIQPESGASKHSIAQLISLMARSL
GCAVVAEGVEDAQTAQMLIEMGCDFGQGWWYSKALPPEEARVLIRNFAQGTVMVPVPLNAKVAH
>Mature_703_residues
SKASIVIVEDEVIVALDMAQALKAAGYNVIGSFSCGEAALEFIAEQCPDLIVMDIHLQGQLDGISTAEQIQKRYGLPIIY
LTAYSDSETLSRAKATEPYAYLVKPFEDRDLLSAIEMGLYRHRVDQRLRRMERLYSSTLNSVDDAIITTDIYGLIKFANP
TASSLLNRPNDALIGQFIGDVVQLLDRETKITYQFDLPYLIQQANHHMLLPRQILVNDQAKFVVAPSISQIREEDEAIAG
IVLVLRDMRDLDAAEEHIRHQALHDALTGLANRNVFINRLQYILDHYHLHHHHAVLFIDLDRFKIINDSLGHIVGDKLLI
QVGQRLERCIRSHDLVARLGGDEFTILLDGVNDIHDVLRVTDRLLSVVAEPYHIDGYKVFTAASIGIVVIDDHYKHYHEV
LRDVDSAMYRAKSQGRGCRAVFDEEMHVEALRTLQLEVELRRAVERDELCLHYQPIIKLATGELSGFEALLRWNHPTQGV
IGPASFFAIAEETGILAQIGWKLLRESCQQICAWQNEFQFHPPLELSVNFTHRQFFQANLIQQVQSILAETGMPARHLCA
EITEGVMMQSNRAVEVMHELHDLGVQVHIDDFGTGYASLSLLHSAPIDVLKIDRTFIQPESGASKHSIAQLISLMARSLG
CAVVAEGVEDAQTAQMLIEMGCDFGQGWWYSKALPPEEARVLIRNFAQGTVMVPVPLNAKVAH

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=436, Percent_Identity=34.1743119266055, Blast_Score=257, Evalue=1e-69,
Organism=Escherichia coli, GI87081921, Length=430, Percent_Identity=33.0232558139535, Blast_Score=212, Evalue=7e-56,
Organism=Escherichia coli, GI226510982, Length=426, Percent_Identity=25.8215962441315, Blast_Score=149, Evalue=8e-37,
Organism=Escherichia coli, GI87081743, Length=239, Percent_Identity=31.7991631799163, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1790496, Length=240, Percent_Identity=32.0833333333333, Blast_Score=143, Evalue=5e-35,
Organism=Escherichia coli, GI1787055, Length=237, Percent_Identity=32.4894514767932, Blast_Score=137, Evalue=3e-33,
Organism=Escherichia coli, GI1788381, Length=302, Percent_Identity=33.4437086092715, Blast_Score=134, Evalue=3e-32,
Organism=Escherichia coli, GI1788502, Length=244, Percent_Identity=32.3770491803279, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI87081845, Length=338, Percent_Identity=27.2189349112426, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI1786507, Length=238, Percent_Identity=31.0924369747899, Blast_Score=120, Evalue=4e-28,
Organism=Escherichia coli, GI87081980, Length=238, Percent_Identity=31.5126050420168, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI87081977, Length=154, Percent_Identity=37.012987012987, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI1788849, Length=239, Percent_Identity=30.5439330543933, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI87081881, Length=183, Percent_Identity=35.5191256830601, Blast_Score=96, Evalue=8e-21,
Organism=Escherichia coli, GI1786584, Length=171, Percent_Identity=33.9181286549708, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI1788956, Length=166, Percent_Identity=34.3373493975904, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI145693134, Length=191, Percent_Identity=33.5078534031414, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI1787262, Length=217, Percent_Identity=30.4147465437788, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI87082007, Length=179, Percent_Identity=27.3743016759777, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1787802, Length=183, Percent_Identity=25.1366120218579, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1788085, Length=159, Percent_Identity=30.8176100628931, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1790299, Length=170, Percent_Identity=27.0588235294118, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI87082096, Length=243, Percent_Identity=24.6913580246914, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI87081974, Length=95, Percent_Identity=37.8947368421053, Blast_Score=66, Evalue=9e-12,
Organism=Escherichia coli, GI1787816, Length=170, Percent_Identity=30.5882352941176, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1790437, Length=123, Percent_Identity=33.3333333333333, Blast_Score=63, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 79144; Mature: 79013

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: PS50112 PAS ; PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKASIVIVEDEVIVALDMAQALKAAGYNVIGSFSCGEAALEFIAEQCPDLIVMDIHLQG
CCCCEEEEEECCEEEEHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCEEEEEEEECC
QLDGISTAEQIQKRYGLPIIYLTAYSDSETLSRAKATEPYAYLVKPFEDRDLLSAIEMGL
CCCCCCHHHHHHHHCCCCEEEEEEECCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHH
YRHRVDQRLRRMERLYSSTLNSVDDAIITTDIYGLIKFANPTASSLLNRPNDALIGQFIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHCCCCHHHHHHHHH
DVVQLLDRETKITYQFDLPYLIQQANHHMLLPRQILVNDQAKFVVAPSISQIREEDEAIA
HHHHHHCCCCEEEEEECCHHHHHHCCCCEECCHHHHCCCCCCEEECCCHHHHHHHHHHHH
GIVLVLRDMRDLDAAEEHIRHQALHDALTGLANRNVFINRLQYILDHYHLHHHHAVLFID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
LDRFKIINDSLGHIVGDKLLIQVGQRLERCIRSHDLVARLGGDEFTILLDGVNDIHDVLR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCEEEEEECCHHHHHHHHH
VTDRLLSVVAEPYHIDGYKVFTAASIGIVVIDDHYKHYHEVLRDVDSAMYRAKSQGRGCR
HHHHHHHHHCCCEECCCEEEEEECCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCH
AVFDEEMHVEALRTLQLEVELRRAVERDELCLHYQPIIKLATGELSGFEALLRWNHPTQG
HHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHEEHHHHHHHHCCCCHHHHHHHHCCCCCCC
VIGPASFFAIAEETGILAQIGWKLLRESCQQICAWQNEFQFHPPLELSVNFTHRQFFQAN
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECHHHHHHHHH
LIQQVQSILAETGMPARHLCAEITEGVMMQSNRAVEVMHELHDLGVQVHIDDFGTGYASL
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEEECCCCCHHHH
SLLHSAPIDVLKIDRTFIQPESGASKHSIAQLISLMARSLGCAVVAEGVEDAQTAQMLIE
HHHHCCCCCEEEECHHEECCCCCCCHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHH
MGCDFGQGWWYSKALPPEEARVLIRNFAQGTVMVPVPLNAKVAH
HCCCCCCCCEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCC
>Mature Secondary Structure 
SKASIVIVEDEVIVALDMAQALKAAGYNVIGSFSCGEAALEFIAEQCPDLIVMDIHLQG
CCCEEEEEECCEEEEHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCEEEEEEEECC
QLDGISTAEQIQKRYGLPIIYLTAYSDSETLSRAKATEPYAYLVKPFEDRDLLSAIEMGL
CCCCCCHHHHHHHHCCCCEEEEEEECCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHH
YRHRVDQRLRRMERLYSSTLNSVDDAIITTDIYGLIKFANPTASSLLNRPNDALIGQFIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHCCCCHHHHHHHHH
DVVQLLDRETKITYQFDLPYLIQQANHHMLLPRQILVNDQAKFVVAPSISQIREEDEAIA
HHHHHHCCCCEEEEEECCHHHHHHCCCCEECCHHHHCCCCCCEEECCCHHHHHHHHHHHH
GIVLVLRDMRDLDAAEEHIRHQALHDALTGLANRNVFINRLQYILDHYHLHHHHAVLFID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
LDRFKIINDSLGHIVGDKLLIQVGQRLERCIRSHDLVARLGGDEFTILLDGVNDIHDVLR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCEEEEEECCHHHHHHHHH
VTDRLLSVVAEPYHIDGYKVFTAASIGIVVIDDHYKHYHEVLRDVDSAMYRAKSQGRGCR
HHHHHHHHHCCCEECCCEEEEEECCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCH
AVFDEEMHVEALRTLQLEVELRRAVERDELCLHYQPIIKLATGELSGFEALLRWNHPTQG
HHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHEEHHHHHHHHCCCCHHHHHHHHCCCCCCC
VIGPASFFAIAEETGILAQIGWKLLRESCQQICAWQNEFQFHPPLELSVNFTHRQFFQAN
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECHHHHHHHHH
LIQQVQSILAETGMPARHLCAEITEGVMMQSNRAVEVMHELHDLGVQVHIDDFGTGYASL
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEEECCCCCHHHH
SLLHSAPIDVLKIDRTFIQPESGASKHSIAQLISLMARSLGCAVVAEGVEDAQTAQMLIE
HHHHCCCCCEEEECHHEECCCCCCCHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHH
MGCDFGQGWWYSKALPPEEARVLIRNFAQGTVMVPVPLNAKVAH
HCCCCCCCCEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]