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The map label for this gene is yabD [H]

Identifier: 159897492

GI number: 159897492

Start: 1103413

End: 1104183

Strand: Direct

Name: yabD [H]

Synonym: Haur_0963

Alternate gene names: 159897492

Gene position: 1103413-1104183 (Clockwise)

Preceding gene: 159897483

Following gene: 159897493

Centisome position: 17.39

GC content: 51.62

Gene sequence:

>771_bases
ATGTTAATTGATACCCACACTCATGTTCATAGCGATCAGTTTGATGATGATCGAGCGGCAGTGTTTGAGCGTGCCCAAGC
CGCTGACGTAACTCGCATGATCAACATTGGCTACGATTTGCCCTCGTCACGCGCCAGTGTTGCCTTAGCTCAATGCCAGC
CCATGGTCTGGGCTAGCGTGGGCATTCAGCCGCATTATGCCTTGAATACTGGCGAGGCTGAATTAGCCCAAATTCGCCAG
TTATTGGCTGAGCCGCGAGTGGTGGCCTTGGGCGAAATTGGGCTTGATTATTACCATGATCGTGCGCCCCACGATATTCA
AGAGCAGTTGTTTCGCCAACAACTAGCGATGGCCCGCGAACTGGATTTTCCGGTCGTCATCCATAGCCGCGATGCTGTTA
CCGATACAGTACGGATTTTGGATTCGGCGGCACGCGGCCAAGCTGGGGTGATGCACTCATTTAGTGGTGATTGGACTTAC
GCCGAAGCTTGTTTGGATGTTGGGTTTTATCTTTCATTCTCTGGTCCTGTGACCTTCAAAAAAGCTGTTGAGTTGCAGGA
TGTGGTTCAGCGTGTGCCGCTTGATCGCATATTAATTGAAACTGATGCCCCGTATCTAACACCTCACCCATATCGTGGCA
AACGCAATGAGCCAAGCTATGTGGCGTATGTGGCCGAAGCAATTGCGCGGTTGCGTGATTTGAGCCTTGCTGAAGTTGCG
ACGATCACCACGGCCAATGCTGAACGCTTATTTCGGCGGTTGCTCGCCTAA

Upstream 100 bases:

>100_bases
GCTCCCCTCTCCCGCCGTCGTGGGAGAGGGGTCGGGGGTGAGGGCACCCAATCGATTAATAATTTGATAAACCATGACCC
ATAGCACCGTAGGGAAATCC

Downstream 100 bases:

>100_bases
ACCAATGCTCATCAACTGCTAACCCAGCAGCGCCGAGAGCCATTTTAAAATAGAAGTAGCCTGCCTGCTAGATTGAGGAA
TCCCCTATGCTGCAACGAAT

Product: TatD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MLIDTHTHVHSDQFDDDRAAVFERAQAADVTRMINIGYDLPSSRASVALAQCQPMVWASVGIQPHYALNTGEAELAQIRQ
LLAEPRVVALGEIGLDYYHDRAPHDIQEQLFRQQLAMARELDFPVVIHSRDAVTDTVRILDSAARGQAGVMHSFSGDWTY
AEACLDVGFYLSFSGPVTFKKAVELQDVVQRVPLDRILIETDAPYLTPHPYRGKRNEPSYVAYVAEAIARLRDLSLAEVA
TITTANAERLFRRLLA

Sequences:

>Translated_256_residues
MLIDTHTHVHSDQFDDDRAAVFERAQAADVTRMINIGYDLPSSRASVALAQCQPMVWASVGIQPHYALNTGEAELAQIRQ
LLAEPRVVALGEIGLDYYHDRAPHDIQEQLFRQQLAMARELDFPVVIHSRDAVTDTVRILDSAARGQAGVMHSFSGDWTY
AEACLDVGFYLSFSGPVTFKKAVELQDVVQRVPLDRILIETDAPYLTPHPYRGKRNEPSYVAYVAEAIARLRDLSLAEVA
TITTANAERLFRRLLA
>Mature_256_residues
MLIDTHTHVHSDQFDDDRAAVFERAQAADVTRMINIGYDLPSSRASVALAQCQPMVWASVGIQPHYALNTGEAELAQIRQ
LLAEPRVVALGEIGLDYYHDRAPHDIQEQLFRQQLAMARELDFPVVIHSRDAVTDTVRILDSAARGQAGVMHSFSGDWTY
AEACLDVGFYLSFSGPVTFKKAVELQDVVQRVPLDRILIETDAPYLTPHPYRGKRNEPSYVAYVAEAIARLRDLSLAEVA
TITTANAERLFRRLLA

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI14042943, Length=268, Percent_Identity=27.9850746268657, Blast_Score=105, Evalue=3e-23,
Organism=Homo sapiens, GI110349730, Length=266, Percent_Identity=29.3233082706767, Blast_Score=104, Evalue=8e-23,
Organism=Homo sapiens, GI225903424, Length=204, Percent_Identity=30.8823529411765, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI110349734, Length=266, Percent_Identity=29.3233082706767, Blast_Score=100, Evalue=9e-22,
Organism=Homo sapiens, GI226061853, Length=273, Percent_Identity=28.9377289377289, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI225903439, Length=247, Percent_Identity=27.9352226720648, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI226061614, Length=255, Percent_Identity=28.2352941176471, Blast_Score=95, Evalue=6e-20,
Organism=Homo sapiens, GI226061595, Length=228, Percent_Identity=26.7543859649123, Blast_Score=72, Evalue=6e-13,
Organism=Escherichia coli, GI1787342, Length=256, Percent_Identity=40.234375, Blast_Score=175, Evalue=3e-45,
Organism=Escherichia coli, GI48994985, Length=257, Percent_Identity=33.4630350194552, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI87082439, Length=252, Percent_Identity=31.3492063492063, Blast_Score=129, Evalue=2e-31,
Organism=Caenorhabditis elegans, GI17559024, Length=279, Percent_Identity=28.3154121863799, Blast_Score=128, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI71980746, Length=262, Percent_Identity=27.4809160305344, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17543026, Length=214, Percent_Identity=28.0373831775701, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17565396, Length=217, Percent_Identity=26.7281105990783, Blast_Score=77, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24648690, Length=283, Percent_Identity=29.6819787985866, Blast_Score=113, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24586117, Length=279, Percent_Identity=26.8817204301075, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI221330018, Length=279, Percent_Identity=26.8817204301075, Blast_Score=81, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28605; Mature: 28605

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIDTHTHVHSDQFDDDRAAVFERAQAADVTRMINIGYDLPSSRASVALAQCQPMVWASV
CEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHC
GIQPHYALNTGEAELAQIRQLLAEPRVVALGEIGLDYYHDRAPHDIQEQLFRQQLAMARE
CCCCCEEECCCHHHHHHHHHHHCCCCEEEEEHHCHHHHCCCCCCHHHHHHHHHHHHHHHH
LDFPVVIHSRDAVTDTVRILDSAARGQAGVMHSFSGDWTYAEACLDVGFYLSFSGPVTFK
CCCCEEEECCHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHEEEECCCCHHH
KAVELQDVVQRVPLDRILIETDAPYLTPHPYRGKRNEPSYVAYVAEAIARLRDLSLAEVA
HHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHH
TITTANAERLFRRLLA
HHCCCCHHHHHHHHCC
>Mature Secondary Structure
MLIDTHTHVHSDQFDDDRAAVFERAQAADVTRMINIGYDLPSSRASVALAQCQPMVWASV
CEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHC
GIQPHYALNTGEAELAQIRQLLAEPRVVALGEIGLDYYHDRAPHDIQEQLFRQQLAMARE
CCCCCEEECCCHHHHHHHHHHHCCCCEEEEEHHCHHHHCCCCCCHHHHHHHHHHHHHHHH
LDFPVVIHSRDAVTDTVRILDSAARGQAGVMHSFSGDWTYAEACLDVGFYLSFSGPVTFK
CCCCEEEECCHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHEEEECCCCHHH
KAVELQDVVQRVPLDRILIETDAPYLTPHPYRGKRNEPSYVAYVAEAIARLRDLSLAEVA
HHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHH
TITTANAERLFRRLLA
HHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]