| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is yigI [C]
Identifier: 159897433
GI number: 159897433
Start: 1036366
End: 1036791
Strand: Reverse
Name: yigI [C]
Synonym: Haur_0904
Alternate gene names: 159897433
Gene position: 1036791-1036366 (Counterclockwise)
Preceding gene: 159897459
Following gene: 159897432
Centisome position: 16.34
GC content: 47.89
Gene sequence:
>426_bases ATGAGTGATGATCTAACCGCTATCGGTCAGCAGATTTTAGCTAGTCAGCCTTTCAGCCAGTTGCTCAAAGCCCAAATTAG CGAATTTCGCCAAGGCTACGCCGAATTACGCTTGAAGATTAACCCTGAGCTAACCCAACAATTTGGCTTTGTCCATGGTG GCGTGCTCAGCTATGCCGCCGATAACGCCATTACCTTTGCTGGTGGCTCGGTTTTGGGCTTGGAAGTCGTCACTGCTGAA TACAAAATCAATTATGTCAAACCAGCTCAAGACCAAGAACTGATTGCTCGTGCCAGTGTTTTGAGCAGCGGCAGTCGTCA GGCCGTTTGCCAATGTTTGGTTTATTGCCAAGACGAGCAAAATGAAACCTTGGTTGCAGTTGCCCAAGGCACGATTATGA CCCTCAGCAGCAAACGCTCATTATAA
Upstream 100 bases:
>100_bases CGCGCACCAACACTTCGGCCAAATCGACAGCATCTTCAACCACCAAAATTGTCGGCACATGCTCAGCCATCGCCAAATCC TTATTCTGTGTGAGGTTCAA
Downstream 100 bases:
>100_bases TTAGCTTATCGCCTGTAGTTCCCTCACCCCCAACCCCTCTCCCACTGCGGCGGGCGAGGGGAGTTCTAAGCCTCATGCCG GAGGTTTCCCCATTGCCTGC
Product: thioesterase superfamily protein
Products: NA
Alternate protein names: Phenylacetic Acid Degradation Protein; Phenylacetic Acid Degradation-Related Protein; Thioesterase; Thioesterase Family Protein; Phenylacetic Acid Degradation Protein PaaI; Thioesterase/Thiol Ester Dehydrase-Isomerase; Thioesterase Superfamily; Conserved Domain Protein; Domain 1 Protein; Phenylacetic Acid Degradation Protein PaaD
Number of amino acids: Translated: 141; Mature: 140
Protein sequence:
>141_residues MSDDLTAIGQQILASQPFSQLLKAQISEFRQGYAELRLKINPELTQQFGFVHGGVLSYAADNAITFAGGSVLGLEVVTAE YKINYVKPAQDQELIARASVLSSGSRQAVCQCLVYCQDEQNETLVAVAQGTIMTLSSKRSL
Sequences:
>Translated_141_residues MSDDLTAIGQQILASQPFSQLLKAQISEFRQGYAELRLKINPELTQQFGFVHGGVLSYAADNAITFAGGSVLGLEVVTAE YKINYVKPAQDQELIARASVLSSGSRQAVCQCLVYCQDEQNETLVAVAQGTIMTLSSKRSL >Mature_140_residues SDDLTAIGQQILASQPFSQLLKAQISEFRQGYAELRLKINPELTQQFGFVHGGVLSYAADNAITFAGGSVLGLEVVTAEY KINYVKPAQDQELIARASVLSSGSRQAVCQCLVYCQDEQNETLVAVAQGTIMTLSSKRSL
Specific function: Unknown
COG id: COG2050
COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15262; Mature: 15130
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDDLTAIGQQILASQPFSQLLKAQISEFRQGYAELRLKINPELTQQFGFVHGGVLSYAA CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHCCCCCHHHHHHC DNAITFAGGSVLGLEVVTAEYKINYVKPAQDQELIARASVLSSGSRQAVCQCLVYCQDEQ CCEEEECCCCEEEEEEEEEEEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC NETLVAVAQGTIMTLSSKRSL CCEEEEEECCEEEEECCCCCC >Mature Secondary Structure SDDLTAIGQQILASQPFSQLLKAQISEFRQGYAELRLKINPELTQQFGFVHGGVLSYAA CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHCCCCCHHHHHHC DNAITFAGGSVLGLEVVTAEYKINYVKPAQDQELIARASVLSSGSRQAVCQCLVYCQDEQ CCEEEECCCCEEEEEEEEEEEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC NETLVAVAQGTIMTLSSKRSL CCEEEEEECCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA