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The map label for this gene is abfB [H]

Identifier: 159897388

GI number: 159897388

Start: 972259

End: 973710

Strand: Reverse

Name: abfB [H]

Synonym: Haur_0859

Alternate gene names: 159897388

Gene position: 973710-972259 (Counterclockwise)

Preceding gene: 159897392

Following gene: 159897385

Centisome position: 15.34

GC content: 51.72

Gene sequence:

>1452_bases
ATGAAACCCTCACGGTTTATGTGGATTTTTGCGTTACTTGTTCTTTTTGGTAGTTCTCTTCCCTCAACCCAAGCTCAATC
GCGCAAAGACGGCGCGGTTGAACAGGCTGACGATACCCTGCCCGTCAACGACCCCGAACGCGGCATGATCTACGATGGCT
TGACTCCAGCGAAAACTGGTCCGTGTGCTGGCATGTATGAAGTTAAAGTTGGCGACCAAATCTTCTGTAGCCACGGCCCC
GACCCAATCGCCAAAGGCAAATCGGTTAAAGACGAAACCTTGCCGCTCGAAAAGGCCGCAATCAACCCAATGATCGTCTG
TAACGGCGATGGCCACGCTGGTAACCGCACCCAAGTGATGTATGTGCGGGCTTCCGACCGACCTGATCGTTTCAACCAAT
TTGTTGGTTCGATTCGCCAATGGTCATCGGATATGGATCGGATCTATCAAACTAGTGCCCAAGAAACTGGCGGCTTCCGC
GCGGTCAACTTCGTCACCAACAATTGTGAAATTTACGTGATGAATGTGGTCGTGCCAGCCGATGGCGACGATTCAATCGA
CAAAACTGCCAATGCTTTGAAAGCCCTCGGCCACAATCGCGCCGACCGCAAATATTTGACCTTCGTCGATAACAACATTT
TGTGTGGCGTAGCCTTCTACATGCTCGATGATCGCCCCGACCAAAATAACGCCAATAACTTCGGCCCTGGCTTTGCACGT
ATGGATAACGGCTGCTGGAACGGCGCAACCGCTGCTCACGAACATATGCACACGATGGGTGCAGTCCAACGCTCGGCTCC
CAATAGCACCGCCTATGGTCACTGTATCGATGATGAAGATATTATGTGCTACGTTGACGGCCCAGGCACGCCACCAATGC
AAAATCGCTGTGGTGCCAGCCAATATGGCCGCTTCGATTGTAACCACGACGATTATTTCCACACCAATCCGCCAGCAGGC
AGCTACTTGGCAACCAAATGGAACTCGGCCAACAATAAGTTCTTGTTGAAGCAAGCACCTGGCGCAACCTACTATCGGGT
GCGCAACCGAGCAACCAACAAGTGTATCGATGTTGCCGAGGGTGGCAACCCCGCTAATGGCACGGTCATTCTGCAATGGG
ATTGCCACAACGGCTACAATCAACAATGGCAATTGATTTCGACCGACAATGGTTTTGTGCGCTTCGTCTCACGCGCCACC
GGCAAGGTAATGGATGTAAGTGCCGCCTCGACCAGCGATGGAGCCAAAATCCATCAATGGGAATGGGTCGGCGGTGCCAA
CCAACAATGGCGCATCAATAATCTTGGCAATGGCTATTCAACCATTACAGCTCGCCACAGTGGGTTAGCGGTTGATATTC
CATGGTGCGATGCAGCCAGCGGCGTGCAATTGCAGCAAGTCAATCCAACCAACAACGATTGTCAATCATTTGTATTTGAG
CCAATGCAATAA

Upstream 100 bases:

>100_bases
TAAGTTTCAGCAAGGAGGCCAAGCGCAAAACCTAGGAATCTCAGCGGCGAGATTATCGAAGATTAGCCAGACTTGTAGTT
ACAGTTCATGGAGGAATTGT

Downstream 100 bases:

>100_bases
GTTCAGCGCTATCACTCCTTAGCACACATACCACAGCAGCAAGGCCACTGGAGTTTCCAGTGGCCTTGCTGTTTTTTAGA
ACATATCGCTCATCCATGGG

Product: Ricin B lectin

Products: NA

Alternate protein names: Arabinosidase [H]

Number of amino acids: Translated: 483; Mature: 483

Protein sequence:

>483_residues
MKPSRFMWIFALLVLFGSSLPSTQAQSRKDGAVEQADDTLPVNDPERGMIYDGLTPAKTGPCAGMYEVKVGDQIFCSHGP
DPIAKGKSVKDETLPLEKAAINPMIVCNGDGHAGNRTQVMYVRASDRPDRFNQFVGSIRQWSSDMDRIYQTSAQETGGFR
AVNFVTNNCEIYVMNVVVPADGDDSIDKTANALKALGHNRADRKYLTFVDNNILCGVAFYMLDDRPDQNNANNFGPGFAR
MDNGCWNGATAAHEHMHTMGAVQRSAPNSTAYGHCIDDEDIMCYVDGPGTPPMQNRCGASQYGRFDCNHDDYFHTNPPAG
SYLATKWNSANNKFLLKQAPGATYYRVRNRATNKCIDVAEGGNPANGTVILQWDCHNGYNQQWQLISTDNGFVRFVSRAT
GKVMDVSAASTSDGAKIHQWEWVGGANQQWRINNLGNGYSTITARHSGLAVDIPWCDAASGVQLQQVNPTNNDCQSFVFE
PMQ

Sequences:

>Translated_483_residues
MKPSRFMWIFALLVLFGSSLPSTQAQSRKDGAVEQADDTLPVNDPERGMIYDGLTPAKTGPCAGMYEVKVGDQIFCSHGP
DPIAKGKSVKDETLPLEKAAINPMIVCNGDGHAGNRTQVMYVRASDRPDRFNQFVGSIRQWSSDMDRIYQTSAQETGGFR
AVNFVTNNCEIYVMNVVVPADGDDSIDKTANALKALGHNRADRKYLTFVDNNILCGVAFYMLDDRPDQNNANNFGPGFAR
MDNGCWNGATAAHEHMHTMGAVQRSAPNSTAYGHCIDDEDIMCYVDGPGTPPMQNRCGASQYGRFDCNHDDYFHTNPPAG
SYLATKWNSANNKFLLKQAPGATYYRVRNRATNKCIDVAEGGNPANGTVILQWDCHNGYNQQWQLISTDNGFVRFVSRAT
GKVMDVSAASTSDGAKIHQWEWVGGANQQWRINNLGNGYSTITARHSGLAVDIPWCDAASGVQLQQVNPTNNDCQSFVFE
PMQ
>Mature_483_residues
MKPSRFMWIFALLVLFGSSLPSTQAQSRKDGAVEQADDTLPVNDPERGMIYDGLTPAKTGPCAGMYEVKVGDQIFCSHGP
DPIAKGKSVKDETLPLEKAAINPMIVCNGDGHAGNRTQVMYVRASDRPDRFNQFVGSIRQWSSDMDRIYQTSAQETGGFR
AVNFVTNNCEIYVMNVVVPADGDDSIDKTANALKALGHNRADRKYLTFVDNNILCGVAFYMLDDRPDQNNANNFGPGFAR
MDNGCWNGATAAHEHMHTMGAVQRSAPNSTAYGHCIDDEDIMCYVDGPGTPPMQNRCGASQYGRFDCNHDDYFHTNPPAG
SYLATKWNSANNKFLLKQAPGATYYRVRNRATNKCIDVAEGGNPANGTVILQWDCHNGYNQQWQLISTDNGFVRFVSRAT
GKVMDVSAASTSDGAKIHQWEWVGGANQQWRINNLGNGYSTITARHSGLAVDIPWCDAASGVQLQQVNPTNNDCQSFVFE
PMQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ricin B-type lectin domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005193
- InterPro:   IPR008997
- InterPro:   IPR000772 [H]

Pfam domain/function: PF03664 Glyco_hydro_62; PF00652 Ricin_B_lectin [H]

EC number: =3.2.1.55 [H]

Molecular weight: Translated: 53094; Mature: 53094

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: PS50231 RICIN_B_LECTIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPSRFMWIFALLVLFGSSLPSTQAQSRKDGAVEQADDTLPVNDPERGMIYDGLTPAKTG
CCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
PCAGMYEVKVGDQIFCSHGPDPIAKGKSVKDETLPLEKAAINPMIVCNGDGHAGNRTQVM
CCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCCCCCEEEE
YVRASDRPDRFNQFVGSIRQWSSDMDRIYQTSAQETGGFRAVNFVTNNCEIYVMNVVVPA
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEEEEEEEEEEC
DGDDSIDKTANALKALGHNRADRKYLTFVDNNILCGVAFYMLDDRPDQNNANNFGPGFAR
CCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEEEEECCCCCCCCCCCCCCCHHH
MDNGCWNGATAAHEHMHTMGAVQRSAPNSTAYGHCIDDEDIMCYVDGPGTPPMQNRCGAS
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCCCCCHHHCCCCC
QYGRFDCNHDDYFHTNPPAGSYLATKWNSANNKFLLKQAPGATYYRVRNRATNKCIDVAE
CCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECC
GGNPANGTVILQWDCHNGYNQQWQLISTDNGFVRFVSRATGKVMDVSAASTSDGAKIHQW
CCCCCCCEEEEEEECCCCCCCEEEEEECCCCCEEEEHHHCCCEEEEECCCCCCCCEEEEE
EWVGGANQQWRINNLGNGYSTITARHSGLAVDIPWCDAASGVQLQQVNPTNNDCQSFVFE
EEECCCCCCEEECCCCCCEEEEEEECCCCEEECCCCCCCCCCEEEECCCCCCCHHHHHCC
PMQ
CCC
>Mature Secondary Structure
MKPSRFMWIFALLVLFGSSLPSTQAQSRKDGAVEQADDTLPVNDPERGMIYDGLTPAKTG
CCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
PCAGMYEVKVGDQIFCSHGPDPIAKGKSVKDETLPLEKAAINPMIVCNGDGHAGNRTQVM
CCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCCCCCEEEE
YVRASDRPDRFNQFVGSIRQWSSDMDRIYQTSAQETGGFRAVNFVTNNCEIYVMNVVVPA
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEEEEEEEEEEC
DGDDSIDKTANALKALGHNRADRKYLTFVDNNILCGVAFYMLDDRPDQNNANNFGPGFAR
CCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEEEEECCCCCCCCCCCCCCCHHH
MDNGCWNGATAAHEHMHTMGAVQRSAPNSTAYGHCIDDEDIMCYVDGPGTPPMQNRCGAS
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCCCCCHHHCCCCC
QYGRFDCNHDDYFHTNPPAGSYLATKWNSANNKFLLKQAPGATYYRVRNRATNKCIDVAE
CCCCCCCCCCCCEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECC
GGNPANGTVILQWDCHNGYNQQWQLISTDNGFVRFVSRATGKVMDVSAASTSDGAKIHQW
CCCCCCCEEEEEEECCCCCCCEEEEEECCCCCEEEEHHHCCCEEEEECCCCCCCCEEEEE
EWVGGANQQWRINNLGNGYSTITARHSGLAVDIPWCDAASGVQLQQVNPTNNDCQSFVFE
EEECCCCCCEEECCCCCCEEEEEEECCCCEEECCCCCCCCCCEEEECCCCCCCHHHHHCC
PMQ
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]