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The map label for this gene is cycH [H]

Identifier: 159046592

GI number: 159046592

Start: 113345

End: 114496

Strand: Direct

Name: cycH [H]

Synonym: Dshi_4054

Alternate gene names: 159046592

Gene position: 113345-114496 (Clockwise)

Preceding gene: 159046591

Following gene: 159046595

Centisome position: 89.74

GC content: 59.64

Gene sequence:

>1152_bases
ATGATCTGGGGTATTTTCGTTCTTTTGACGCTGGTCGCAATCGGAATTGTCCTCTACCCGCTGCTGCTGTCCAAATCGAA
CACTCTCACCAGAGGGGATGCGGTACCGGCGATCCTCGCCGATCAGATGCGGGAAATCCAACGAGACATGGACCGCGGTT
TGATTTCTGAACAGGAAGCTCAAGCGGCCAGACTCGAGATCAAGAAACGGATCCTCGCGACGACCCGCAATTCGGAAGAA
AAAGCCGGATCATCCCGTAATGGTGGCAGAGTCACTCTCGTTGTCGCGGCGGTCCTCGCGCCGGTTATTGCCGCGGGCTA
CTATCTGACGATGGGATCGCCGGAGGTTCCTTCAATGGCCTTCGCTGCCCGTGCAGAGGAGCGGGCACAGACTGATGAAG
TGACGGCGCTGGCAATACAACTTCGCGAAAGGCTTGTATCCGATCCGACCGGCGGCCCTAGCGAAGGGTGGATGCTGTTG
GGCCAGACCTATCAGCGCATGGGCAGAGCAGCCGATGCCGTCGAAGCCTTCGAAGTCGTTGCCGAACGGGAGGATGCCAC
CTCCGCGACATTCTCCATGCTGGCAGAGGCTGTCGCGGTTGCCAATGACGGCGTTGTTATTCCACGGGCGAAATTGGCCA
TTGATCGCGCTTTGGACCTTGACCCATCCAATCCTGCGGCAACCTACTTCGAGTCTCTGTATTACTTTCAGCAAGAAGAG
ACGCGTAAGGCCTACGATCTGCTTGTTTCACGACTGAATCAGGAAGAGGCTTACGTTCCCTGGATGGAGACCTATGCAGC
GCAGATCAACCGGATTGCAGCGGCAGCTGACCTTCCGGTCGTCAATCTACCCAGCGGGCCGACGTCGCAACCAGGCCCGA
GTGCCGCAGATGTCGCGGCGGCGTCGGAGATGAATGACGCGGATCGCGCGGAGTTCATCCGATCGATGGTCTCGCGGCTG
GCCGAGCGTCTTGAGGATGAACCGGACGATCTGGATGGTTGGATGCGGCTGGCAAATGCCTATACCGTCCTTCAGGAGCC
CGATCGCGCCGTTGAGGCCTACCGCAAGGCTGAAGCGCTGTTGGAGCAGCAGCCCGCCAGTGATCCTCGGCGTGCGGCGG
TCCGTGCCGCGCTTGAGCGGCTCGGCGGCTGA

Upstream 100 bases:

>100_bases
TGATGAGTCGGCGAAAGCAAGAGGCATTTGAAGACTTGGGCTCGGAGGATGAGAACACCGTGTCCGAAATTCTCAGGCAA
AACGAAGCGGGGGATGCGTC

Downstream 100 bases:

>100_bases
CTACTGCTCGGTGTCCCGGTCGAGCAGGTCACTCCTGTCCGGCAACCTTTGCGGAAACATCCCGACCACTGGCTTGCGCC
AAGGCGTTCATCACGTCCTC

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MIWGIFVLLTLVAIGIVLYPLLLSKSNTLTRGDAVPAILADQMREIQRDMDRGLISEQEAQAARLEIKKRILATTRNSEE
KAGSSRNGGRVTLVVAAVLAPVIAAGYYLTMGSPEVPSMAFAARAEERAQTDEVTALAIQLRERLVSDPTGGPSEGWMLL
GQTYQRMGRAADAVEAFEVVAEREDATSATFSMLAEAVAVANDGVVIPRAKLAIDRALDLDPSNPAATYFESLYYFQQEE
TRKAYDLLVSRLNQEEAYVPWMETYAAQINRIAAAADLPVVNLPSGPTSQPGPSAADVAAASEMNDADRAEFIRSMVSRL
AERLEDEPDDLDGWMRLANAYTVLQEPDRAVEAYRKAEALLEQQPASDPRRAAVRAALERLGG

Sequences:

>Translated_383_residues
MIWGIFVLLTLVAIGIVLYPLLLSKSNTLTRGDAVPAILADQMREIQRDMDRGLISEQEAQAARLEIKKRILATTRNSEE
KAGSSRNGGRVTLVVAAVLAPVIAAGYYLTMGSPEVPSMAFAARAEERAQTDEVTALAIQLRERLVSDPTGGPSEGWMLL
GQTYQRMGRAADAVEAFEVVAEREDATSATFSMLAEAVAVANDGVVIPRAKLAIDRALDLDPSNPAATYFESLYYFQQEE
TRKAYDLLVSRLNQEEAYVPWMETYAAQINRIAAAADLPVVNLPSGPTSQPGPSAADVAAASEMNDADRAEFIRSMVSRL
AERLEDEPDDLDGWMRLANAYTVLQEPDRAVEAYRKAEALLEQQPASDPRRAAVRAALERLGG
>Mature_383_residues
MIWGIFVLLTLVAIGIVLYPLLLSKSNTLTRGDAVPAILADQMREIQRDMDRGLISEQEAQAARLEIKKRILATTRNSEE
KAGSSRNGGRVTLVVAAVLAPVIAAGYYLTMGSPEVPSMAFAARAEERAQTDEVTALAIQLRERLVSDPTGGPSEGWMLL
GQTYQRMGRAADAVEAFEVVAEREDATSATFSMLAEAVAVANDGVVIPRAKLAIDRALDLDPSNPAATYFESLYYFQQEE
TRKAYDLLVSRLNQEEAYVPWMETYAAQINRIAAAADLPVVNLPSGPTSQPGPSAADVAAASEMNDADRAEFIRSMVSRL
AERLEDEPDDLDGWMRLANAYTVLQEPDRAVEAYRKAEALLEQQPASDPRRAAVRAALERLGG

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41688; Mature: 41688

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIWGIFVLLTLVAIGIVLYPLLLSKSNTLTRGDAVPAILADQMREIQRDMDRGLISEQEA
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHH
QAARLEIKKRILATTRNSEEKAGSSRNGGRVTLVVAAVLAPVIAAGYYLTMGSPEVPSMA
HHHHHHHHHHHHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCCCCHHH
FAARAEERAQTDEVTALAIQLRERLVSDPTGGPSEGWMLLGQTYQRMGRAADAVEAFEVV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AEREDATSATFSMLAEAVAVANDGVVIPRAKLAIDRALDLDPSNPAATYFESLYYFQQEE
HHHCCHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
TRKAYDLLVSRLNQEEAYVPWMETYAAQINRIAAAADLPVVNLPSGPTSQPGPSAADVAA
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHH
ASEMNDADRAEFIRSMVSRLAERLEDEPDDLDGWMRLANAYTVLQEPDRAVEAYRKAEAL
HHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
LEQQPASDPRRAAVRAALERLGG
HHHCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIWGIFVLLTLVAIGIVLYPLLLSKSNTLTRGDAVPAILADQMREIQRDMDRGLISEQEA
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHH
QAARLEIKKRILATTRNSEEKAGSSRNGGRVTLVVAAVLAPVIAAGYYLTMGSPEVPSMA
HHHHHHHHHHHHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCCCCHHH
FAARAEERAQTDEVTALAIQLRERLVSDPTGGPSEGWMLLGQTYQRMGRAADAVEAFEVV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AEREDATSATFSMLAEAVAVANDGVVIPRAKLAIDRALDLDPSNPAATYFESLYYFQQEE
HHHCCHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
TRKAYDLLVSRLNQEEAYVPWMETYAAQINRIAAAADLPVVNLPSGPTSQPGPSAADVAA
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHH
ASEMNDADRAEFIRSMVSRLAERLEDEPDDLDGWMRLANAYTVLQEPDRAVEAYRKAEAL
HHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
LEQQPASDPRRAAVRAALERLGG
HHHCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8231805; 12597275 [H]