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The map label for this gene is ccl2 [H]

Identifier: 159046591

GI number: 159046591

Start: 112875

End: 113348

Strand: Direct

Name: ccl2 [H]

Synonym: Dshi_4053

Alternate gene names: 159046591

Gene position: 112875-113348 (Clockwise)

Preceding gene: 159046590

Following gene: 159046592

Centisome position: 89.37

GC content: 58.02

Gene sequence:

>474_bases
ATGAGACAGTTGATTTTCGCGTTTTGCATCGGGCTCCTTCCCTTTGCCGCCAATGCGGTGGAACCGGACGAAATGCTGAC
CGACCCGGTATTGGAACAGCGTGCGCGGGAGATTTCCAAGGATCTACGATGCGTCGTCTGTCAGAACCAGGACATCGACA
GTTCGAACGCGGGTGTGGCGCGGGACTTGCGTCTGCTCGTACGCGAGCGCCTGGTCGTTGGAGACAGCGACGCGGAGGTG
ATCGAATACATACGGGCGCGGTACGGGGATTACGTGCTGCTGAAACCGCCTCTGGAGCCTGCGACCTACGCGCTTTGGTT
CGCTCCGATCGCTTTCGTTCTGATCGGGGTTTTCGTTGGTGGCGGGCTACTGATGAGTCGGCGAAAGCAAGAGGCATTTG
AAGACTTGGGCTCGGAGGATGAGAACACCGTGTCCGAAATTCTCAGGCAAAACGAAGCGGGGGATGCGTCATGA

Upstream 100 bases:

>100_bases
TTTTGTTTCGCTATGTCGGGCCGGTCGTGGGTCCGGACGCCGTCGAACGGTTCACGCAAGCCCTGAAGCAGGCAGGCGCA
CTGCCAAATGGAGCAGGTTC

Downstream 100 bases:

>100_bases
TCTGGGGTATTTTCGTTCTTTTGACGCTGGTCGCAATCGGAATTGTCCTCTACCCGCTGCTGCTGTCCAAATCGAACACT
CTCACCAGAGGGGATGCGGT

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MRQLIFAFCIGLLPFAANAVEPDEMLTDPVLEQRAREISKDLRCVVCQNQDIDSSNAGVARDLRLLVRERLVVGDSDAEV
IEYIRARYGDYVLLKPPLEPATYALWFAPIAFVLIGVFVGGGLLMSRRKQEAFEDLGSEDENTVSEILRQNEAGDAS

Sequences:

>Translated_157_residues
MRQLIFAFCIGLLPFAANAVEPDEMLTDPVLEQRAREISKDLRCVVCQNQDIDSSNAGVARDLRLLVRERLVVGDSDAEV
IEYIRARYGDYVLLKPPLEPATYALWFAPIAFVLIGVFVGGGLLMSRRKQEAFEDLGSEDENTVSEILRQNEAGDAS
>Mature_157_residues
MRQLIFAFCIGLLPFAANAVEPDEMLTDPVLEQRAREISKDLRCVVCQNQDIDSSNAGVARDLRLLVRERLVVGDSDAEV
IEYIRARYGDYVLLKPPLEPATYALWFAPIAFVLIGVFVGGGLLMSRRKQEAFEDLGSEDENTVSEILRQNEAGDAS

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=94, Percent_Identity=41.4893617021277, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI1790512, Length=88, Percent_Identity=37.5, Blast_Score=61, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 17477; Mature: 17477

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQLIFAFCIGLLPFAANAVEPDEMLTDPVLEQRAREISKDLRCVVCQNQDIDSSNAGVA
CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHH
RDLRLLVRERLVVGDSDAEVIEYIRARYGDYVLLKPPLEPATYALWFAPIAFVLIGVFVG
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
GGLLMSRRKQEAFEDLGSEDENTVSEILRQNEAGDAS
CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRQLIFAFCIGLLPFAANAVEPDEMLTDPVLEQRAREISKDLRCVVCQNQDIDSSNAGVA
CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHH
RDLRLLVRERLVVGDSDAEVIEYIRARYGDYVLLKPPLEPATYALWFAPIAFVLIGVFVG
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
GGLLMSRRKQEAFEDLGSEDENTVSEILRQNEAGDAS
CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1310666 [H]