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The map label for this gene is cycK [H]

Identifier: 159046589

GI number: 159046589

Start: 110303

End: 112303

Strand: Direct

Name: cycK [H]

Synonym: Dshi_4051

Alternate gene names: 159046589

Gene position: 110303-112303 (Clockwise)

Preceding gene: 159046588

Following gene: 159046590

Centisome position: 87.33

GC content: 61.57

Gene sequence:

>2001_bases
ATGGTCCCGGAAATTGGTCACTTCGCACTGGCCCTCGCACTGGCGCTTGCGCTTGTTCAGAGTGTTCTACCGATTGCAGG
TGCGTCGCGTAGAAATGCCGTCTGGATGAAATCCGCCCAGGCGACGGCAATAGGACAAGTGCTGTTTGTGGCCATCGCCT
TCGCAGCGCTGATGCAGGCTTTCATCGTCAGCGATTTTACCGTCAGGAACGTCGTCGAGAACTCCCATTCGCTCAAGCCA
ATGCTCTACAAGGTGGCCGGGACCTGGGGCAGCCATGAGGGTTCGCTGCTGCTCTGGATCCTGATACTCGCGGTGTTCGG
CGCGGGCGTCGCCTGGTTCGGATCGAACATCCCCGCCGAGACCAAGGCGCGCACCTTGTCGGTGCAGGCGTGGATCAGCG
TCGGCTTCCTGTCCTTCCTGCTGCTGACGTCGAACCCCTTCGAGCGGGTGTTTCCGCCGCCGCTCGACGGCAATGACCTC
AACCCGTTGCTTCAGGACATGGGTCTCGCCATGCACCCGCCGCTCTTGTATTTCGGGTATGTCGGCTTCTCCATCGTGTT
TTCCTTTGCCGTTGCGGCTCTTCTGGAAGGGCGCGTCGATCCGGCCTGGGCCAGATGGGTCCGCCCGTGGACATTGGCCG
CGTGGGTCAGCCTTACGGCAGGTATCGCTCTTGGATCGTGGTGGGCCTATTATGAACTGGGCTGGGGCGGCTGGTGGTTC
TGGGACCCGGTCGAGAACGTGAGCTTCATGCCCTGGCTTCTGGGCACGGCGCTGCTGCATTCCGCCATCGTCACCGAAAA
GCGCGACGCGTTCAAAAGCTGGACCATCCTACTTGCCATCCTGACTTTCTCGCTTTCGCTGCTCGGGACGTTCATCGTCC
GGTCAGGCCTGCTTACATCCGTGCATGCCTTCGCCGTCGATCCAGAGCGCGGGCTTTACATTCTGGGTCTGCTGGCCGTG
TCCATCGGTGGGTCGCTGGCGCTCTACGCCTGGCGGGCGCCCGAAATGGAGCCGGGTGGTCTGTTTCGCCCGATCAGCCG
CGAGGCCGGGCTGCTCGTGAACAACCTCATTCTGGCCGCCGCTACGGGAACGGTCCTGTTCGGGACGCTTTATCCACTGA
TCCTGGAGGCTGTCACCGGGGACAAGATCTCGGTCGGTCCACCTTTCTTCAACGCGGCCTTCATTCCGATGATGCTGGCA
CTGGTCGTGTTCATGGGTCTTGGTCCATTCCTGTCGTGGAAGCGGGCTGATATCGCCGGTTTGCTCGATCGCATCCAATT
CGTGGCCGTGCTGGCGGTCATTGCAGCCTTGGCCGCATGGTATCTTCTGAACGGTGGGCCGATCATGGCCTATCTTGCCA
TCCTCGGCGCAGCGTGGCTGCTTTTTGCGACCCTGCGGGAATGGGCGCTACGCATCCGTCTGTTCGAGGTTTCCCTTGCA
GAGAGCGCGAGACGCGTGCGCAACCTGCCACGCGCCTCTCACGGTATGACGCTTGCCCATGCCGGCGTCGCTGTGTTGAT
GATGGGGATGATCGGCTCGACCGGATGGAAGAGTGAGGAGATCGTCTTTGCCGCCCCCGGGACCGAAGTCACGATCGCCG
GGTTCGACATCACCTTCGAAGGGGCCGCAAAGGTTCAAGGGCCGAACTACATCGCGGATCGCGGCACCCTTGTGGTGCGT
CGGGATGGCGAATTGGTCACGACACTTTTCCCGGAACGGCGGTATTACCCGGTCGCGGAAAGCCAGACGACGGAGTCGGC
CATCCGCTCCACATTGGCGGGTGATCTCTATACGTCGATTGCAACGCCAGCCTCCGATCAAGTGAACAACGCCGGAGCAT
GGACCCTTCGGATCCTTTATGAACCGCTCGTCAACCTGATCTGGATCGGCTCGATCCTGCTGGTGATCGGTGGCTGTTTG
TCCTTGTCGGATCGCCGTTTGAGGGTCGGGGCGCCGCGCCGTGCCAAACAGCCAGCCACCGATGCCGTTCCTGCCGAGTA
G

Upstream 100 bases:

>100_bases
AGTTCCGTCGCCGCAAAGCAACGCTCGACGAATAGACCCCGCCGCGGACGCCAAAGCCGTCCGACGCGACGCCCACCGAC
GCTGAATAGGAAAGAACGCC

Downstream 100 bases:

>100_bases
GAGAGAAGATGAAACGTCTCATTGCCGGGCTGCCGTTTATTGCGGCGGTCATATTCGGTGGGTTTTTTCTCTGGGGGCTC
AATCCCGACCGGGATCCCAA

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 666; Mature: 666

Protein sequence:

>666_residues
MVPEIGHFALALALALALVQSVLPIAGASRRNAVWMKSAQATAIGQVLFVAIAFAALMQAFIVSDFTVRNVVENSHSLKP
MLYKVAGTWGSHEGSLLLWILILAVFGAGVAWFGSNIPAETKARTLSVQAWISVGFLSFLLLTSNPFERVFPPPLDGNDL
NPLLQDMGLAMHPPLLYFGYVGFSIVFSFAVAALLEGRVDPAWARWVRPWTLAAWVSLTAGIALGSWWAYYELGWGGWWF
WDPVENVSFMPWLLGTALLHSAIVTEKRDAFKSWTILLAILTFSLSLLGTFIVRSGLLTSVHAFAVDPERGLYILGLLAV
SIGGSLALYAWRAPEMEPGGLFRPISREAGLLVNNLILAAATGTVLFGTLYPLILEAVTGDKISVGPPFFNAAFIPMMLA
LVVFMGLGPFLSWKRADIAGLLDRIQFVAVLAVIAALAAWYLLNGGPIMAYLAILGAAWLLFATLREWALRIRLFEVSLA
ESARRVRNLPRASHGMTLAHAGVAVLMMGMIGSTGWKSEEIVFAAPGTEVTIAGFDITFEGAAKVQGPNYIADRGTLVVR
RDGELVTTLFPERRYYPVAESQTTESAIRSTLAGDLYTSIATPASDQVNNAGAWTLRILYEPLVNLIWIGSILLVIGGCL
SLSDRRLRVGAPRRAKQPATDAVPAE

Sequences:

>Translated_666_residues
MVPEIGHFALALALALALVQSVLPIAGASRRNAVWMKSAQATAIGQVLFVAIAFAALMQAFIVSDFTVRNVVENSHSLKP
MLYKVAGTWGSHEGSLLLWILILAVFGAGVAWFGSNIPAETKARTLSVQAWISVGFLSFLLLTSNPFERVFPPPLDGNDL
NPLLQDMGLAMHPPLLYFGYVGFSIVFSFAVAALLEGRVDPAWARWVRPWTLAAWVSLTAGIALGSWWAYYELGWGGWWF
WDPVENVSFMPWLLGTALLHSAIVTEKRDAFKSWTILLAILTFSLSLLGTFIVRSGLLTSVHAFAVDPERGLYILGLLAV
SIGGSLALYAWRAPEMEPGGLFRPISREAGLLVNNLILAAATGTVLFGTLYPLILEAVTGDKISVGPPFFNAAFIPMMLA
LVVFMGLGPFLSWKRADIAGLLDRIQFVAVLAVIAALAAWYLLNGGPIMAYLAILGAAWLLFATLREWALRIRLFEVSLA
ESARRVRNLPRASHGMTLAHAGVAVLMMGMIGSTGWKSEEIVFAAPGTEVTIAGFDITFEGAAKVQGPNYIADRGTLVVR
RDGELVTTLFPERRYYPVAESQTTESAIRSTLAGDLYTSIATPASDQVNNAGAWTLRILYEPLVNLIWIGSILLVIGGCL
SLSDRRLRVGAPRRAKQPATDAVPAE
>Mature_666_residues
MVPEIGHFALALALALALVQSVLPIAGASRRNAVWMKSAQATAIGQVLFVAIAFAALMQAFIVSDFTVRNVVENSHSLKP
MLYKVAGTWGSHEGSLLLWILILAVFGAGVAWFGSNIPAETKARTLSVQAWISVGFLSFLLLTSNPFERVFPPPLDGNDL
NPLLQDMGLAMHPPLLYFGYVGFSIVFSFAVAALLEGRVDPAWARWVRPWTLAAWVSLTAGIALGSWWAYYELGWGGWWF
WDPVENVSFMPWLLGTALLHSAIVTEKRDAFKSWTILLAILTFSLSLLGTFIVRSGLLTSVHAFAVDPERGLYILGLLAV
SIGGSLALYAWRAPEMEPGGLFRPISREAGLLVNNLILAAATGTVLFGTLYPLILEAVTGDKISVGPPFFNAAFIPMMLA
LVVFMGLGPFLSWKRADIAGLLDRIQFVAVLAVIAALAAWYLLNGGPIMAYLAILGAAWLLFATLREWALRIRLFEVSLA
ESARRVRNLPRASHGMTLAHAGVAVLMMGMIGSTGWKSEEIVFAAPGTEVTIAGFDITFEGAAKVQGPNYIADRGTLVVR
RDGELVTTLFPERRYYPVAESQTTESAIRSTLAGDLYTSIATPASDQVNNAGAWTLRILYEPLVNLIWIGSILLVIGGCL
SLSDRRLRVGAPRRAKQPATDAVPAE

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=667, Percent_Identity=45.8770614692654, Blast_Score=515, Evalue=1e-147,
Organism=Escherichia coli, GI1790511, Length=366, Percent_Identity=48.9071038251366, Blast_Score=296, Evalue=3e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 72128; Mature: 72128

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPEIGHFALALALALALVQSVLPIAGASRRNAVWMKSAQATAIGQVLFVAIAFAALMQA
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
FIVSDFTVRNVVENSHSLKPMLYKVAGTWGSHEGSLLLWILILAVFGAGVAWFGSNIPAE
HHHCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCC
TKARTLSVQAWISVGFLSFLLLTSNPFERVFPPPLDGNDLNPLLQDMGLAMHPPLLYFGY
CHHHEEEHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHH
VGFSIVFSFAVAALLEGRVDPAWARWVRPWTLAAWVSLTAGIALGSWWAYYELGWGGWWF
HHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEE
WDPVENVSFMPWLLGTALLHSAIVTEKRDAFKSWTILLAILTFSLSLLGTFIVRSGLLTS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHAFAVDPERGLYILGLLAVSIGGSLALYAWRAPEMEPGGLFRPISREAGLLVNNLILAA
HHHEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHCCHHHHHHHHHH
ATGTVLFGTLYPLILEAVTGDKISVGPPFFNAAFIPMMLALVVFMGLGPFLSWKRADIAG
HHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LLDRIQFVAVLAVIAALAAWYLLNGGPIMAYLAILGAAWLLFATLREWALRIRLFEVSLA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESARRVRNLPRASHGMTLAHAGVAVLMMGMIGSTGWKSEEIVFAAPGTEVTIAGFDITFE
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEEEEEEC
GAAKVQGPNYIADRGTLVVRRDGELVTTLFPERRYYPVAESQTTESAIRSTLAGDLYTSI
CCCEECCCCEEECCCEEEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
ATPASDQVNNAGAWTLRILYEPLVNLIWIGSILLVIGGCLSLSDRRLRVGAPRRAKQPAT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCC
DAVPAE
CCCCCC
>Mature Secondary Structure
MVPEIGHFALALALALALVQSVLPIAGASRRNAVWMKSAQATAIGQVLFVAIAFAALMQA
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
FIVSDFTVRNVVENSHSLKPMLYKVAGTWGSHEGSLLLWILILAVFGAGVAWFGSNIPAE
HHHCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCC
TKARTLSVQAWISVGFLSFLLLTSNPFERVFPPPLDGNDLNPLLQDMGLAMHPPLLYFGY
CHHHEEEHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHH
VGFSIVFSFAVAALLEGRVDPAWARWVRPWTLAAWVSLTAGIALGSWWAYYELGWGGWWF
HHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEE
WDPVENVSFMPWLLGTALLHSAIVTEKRDAFKSWTILLAILTFSLSLLGTFIVRSGLLTS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHAFAVDPERGLYILGLLAVSIGGSLALYAWRAPEMEPGGLFRPISREAGLLVNNLILAA
HHHEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHCCHHHHHHHHHH
ATGTVLFGTLYPLILEAVTGDKISVGPPFFNAAFIPMMLALVVFMGLGPFLSWKRADIAG
HHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LLDRIQFVAVLAVIAALAAWYLLNGGPIMAYLAILGAAWLLFATLREWALRIRLFEVSLA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESARRVRNLPRASHGMTLAHAGVAVLMMGMIGSTGWKSEEIVFAAPGTEVTIAGFDITFE
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEEEEEEC
GAAKVQGPNYIADRGTLVVRRDGELVTTLFPERRYYPVAESQTTESAIRSTLAGDLYTSI
CCCEECCCCEEECCCEEEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
ATPASDQVNNAGAWTLRILYEPLVNLIWIGSILLVIGGCLSLSDRRLRVGAPRRAKQPAT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCC
DAVPAE
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]