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The map label for this gene is xerC [C]

Identifier: 159046543

GI number: 159046543

Start: 69364

End: 70275

Strand: Direct

Name: xerC [C]

Synonym: Dshi_4005

Alternate gene names: 159046543

Gene position: 69364-70275 (Clockwise)

Preceding gene: 159046542

Following gene: 159046544

Centisome position: 54.92

GC content: 61.07

Gene sequence:

>912_bases
ATGATACATCACCATGTAGACCGCTTCGTCCAACTCAACCGCACACTCGGAAAGAAGTTCGCCGCACAGGAGACATCCTT
GCGCGCCTTCGCGGATTTCGCTGCGGAGCGATCCATCACGCATCTGACGGCAGCGCTGATACTGGAATGGGCCGGCGGCG
CCGCGACGCCTTATGCTGCGCAGGCGCGGTTTGATCGCGCCCGCGCATTTGCGGTGTTCCTGCACGCGGAAGATTCACGG
CACGAGATACCTGCGATGGGGCTGCTGGGTCGGTCACGACGGAGGCGGCCCGCTCCCCATATTCTGACGCGGGACCAAAT
CAGTCGGATCATGCATGAAGCGCTTCTGGTGCCCGGCCTGACACCGATCAGCCCGCTGACTTATCATAACCTGTTCGGGC
TGCTCGCTTCGACGGGCTTGCGGATTTCGGAGGCATTGTCCCTTCAGTGCGACGATCTTACGGCGGAGGGCCTCATGGTC
CGGAGCGGCAAGTTTGGCAAGAGTCGTCTCGTGCCAATACATTTTTCGACCCGTGCCGCGCTGGAACGATATCTCGAAGC
CCGCGCGGCCGTGCGTAACGCGAACGACGATCTCTTCGTTCTTGGTCATGGTCATGCCCCGACAAAAACACGGGCCCATG
TGGTCTTCGTTCGGATCGTCCGGAAGCTTGGGTACCGCAATCCGACAGGGCCCGGCCCCCGGCTTCACGATCTGCGCCAC
ACCTTCGCCGTGCGATCCCTTGAGGCCTGTGGGAACAACCCGCAGGCAGTGTTGCGGCACATGAAGGCTCTGAGCACCTA
CCTCGGCCATGTCGATATTGCCAACACCTACTGGTACCTTGAGGCTACGCCGGTTCTTCTGAAGATGATTGCGGCAACCG
CCGAGGAGACCTGGATCGGAGGTGCGGCATGA

Upstream 100 bases:

>100_bases
CAGCGCTGCGCCACACCTCGCGCGATACGACCGCGATCTACGCTAAGGTCGATGTTGGGATGCTGGAAGAAGTGGCTCAG
CCGTGGCCGGGAGACGCGTC

Downstream 100 bases:

>100_bases
CCCCGCTCGCCCCCGACCTTTCAGCCTTCCTGCAAACCCATCTTCCCCATGAATGCGGCGCAAGCCGACATACCATCGCA
GCCTATGCCTGTGCGTTCAC

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MIHHHVDRFVQLNRTLGKKFAAQETSLRAFADFAAERSITHLTAALILEWAGGAATPYAAQARFDRARAFAVFLHAEDSR
HEIPAMGLLGRSRRRRPAPHILTRDQISRIMHEALLVPGLTPISPLTYHNLFGLLASTGLRISEALSLQCDDLTAEGLMV
RSGKFGKSRLVPIHFSTRAALERYLEARAAVRNANDDLFVLGHGHAPTKTRAHVVFVRIVRKLGYRNPTGPGPRLHDLRH
TFAVRSLEACGNNPQAVLRHMKALSTYLGHVDIANTYWYLEATPVLLKMIAATAEETWIGGAA

Sequences:

>Translated_303_residues
MIHHHVDRFVQLNRTLGKKFAAQETSLRAFADFAAERSITHLTAALILEWAGGAATPYAAQARFDRARAFAVFLHAEDSR
HEIPAMGLLGRSRRRRPAPHILTRDQISRIMHEALLVPGLTPISPLTYHNLFGLLASTGLRISEALSLQCDDLTAEGLMV
RSGKFGKSRLVPIHFSTRAALERYLEARAAVRNANDDLFVLGHGHAPTKTRAHVVFVRIVRKLGYRNPTGPGPRLHDLRH
TFAVRSLEACGNNPQAVLRHMKALSTYLGHVDIANTYWYLEATPVLLKMIAATAEETWIGGAA
>Mature_303_residues
MIHHHVDRFVQLNRTLGKKFAAQETSLRAFADFAAERSITHLTAALILEWAGGAATPYAAQARFDRARAFAVFLHAEDSR
HEIPAMGLLGRSRRRRPAPHILTRDQISRIMHEALLVPGLTPISPLTYHNLFGLLASTGLRISEALSLQCDDLTAEGLMV
RSGKFGKSRLVPIHFSTRAALERYLEARAAVRNANDDLFVLGHGHAPTKTRAHVVFVRIVRKLGYRNPTGPGPRLHDLRH
TFAVRSLEACGNNPQAVLRHMKALSTYLGHVDIANTYWYLEATPVLLKMIAATAEETWIGGAA

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerd Binding Sites By A Short Central Region, Forming

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33579; Mature: 33579

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHHHVDRFVQLNRTLGKKFAAQETSLRAFADFAAERSITHLTAALILEWAGGAATPYAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
QARFDRARAFAVFLHAEDSRHEIPAMGLLGRSRRRRPAPHILTRDQISRIMHEALLVPGL
HHHHHHHEEEEEEEECCCCCCCCCHHHHHCCHHCCCCCCCCCCHHHHHHHHHHHHHCCCC
TPISPLTYHNLFGLLASTGLRISEALSLQCDDLTAEGLMVRSGKFGKSRLVPIHFSTRAA
CCCCHHHHHHHHHHHHHCCCCHHHHHCCEECCCCCCCEEEECCCCCCCCEEEEECCHHHH
LERYLEARAAVRNANDDLFVLGHGHAPTKTRAHVVFVRIVRKLGYRNPTGPGPRLHDLRH
HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
TFAVRSLEACGNNPQAVLRHMKALSTYLGHVDIANTYWYLEATPVLLKMIAATAEETWIG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEECCEEEEEEHHHHHHHHHHHHHHHCCCC
GAA
CCC
>Mature Secondary Structure
MIHHHVDRFVQLNRTLGKKFAAQETSLRAFADFAAERSITHLTAALILEWAGGAATPYAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
QARFDRARAFAVFLHAEDSRHEIPAMGLLGRSRRRRPAPHILTRDQISRIMHEALLVPGL
HHHHHHHEEEEEEEECCCCCCCCCHHHHHCCHHCCCCCCCCCCHHHHHHHHHHHHHCCCC
TPISPLTYHNLFGLLASTGLRISEALSLQCDDLTAEGLMVRSGKFGKSRLVPIHFSTRAA
CCCCHHHHHHHHHHHHHCCCCHHHHHCCEECCCCCCCEEEECCCCCCCCEEEEECCHHHH
LERYLEARAAVRNANDDLFVLGHGHAPTKTRAHVVFVRIVRKLGYRNPTGPGPRLHDLRH
HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
TFAVRSLEACGNNPQAVLRHMKALSTYLGHVDIANTYWYLEATPVLLKMIAATAEETWIG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEECCEEEEEEHHHHHHHHHHHHHHHCCCC
GAA
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]