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The map label for this gene is xerD [C]

Identifier: 159046542

GI number: 159046542

Start: 67841

End: 69367

Strand: Direct

Name: xerD [C]

Synonym: Dshi_4004

Alternate gene names: 159046542

Gene position: 67841-69367 (Clockwise)

Preceding gene: 159046536

Following gene: 159046543

Centisome position: 53.71

GC content: 61.17

Gene sequence:

>1527_bases
ATGAACTCCCCCTCGAACTCTCAACGCCGTGCGCGCGACCGCGCTGACAACCTCGCTCTGGTCGACACGTACCACGCCGA
CAATCCCGGGCTTTCCCAGGGTGCGCTGAGCGCAGCCCGCCATTTTCTGAAGTGGGCGCAGGCACGGAAAGTCTCTGTCC
GTGACCTCGACGCGTCGGTTGTAGACAGTTTTCTTCGTCACCACTGCCGCTGCGGTCGCTACAGCCCCAATCAGTTGCGG
AGCCCGATGTATGCCACCTATACTCGCCGGTTTTTTCGATATCTCGAAGACACCGGCATAGTTGCGATCCCAAATGACAC
TGCCCGGCTAAGACAGCACCTGGAGGCCTTTGCCAAGAAGCTCGAGAGCGCTGGCTACAGCGAGGTATCGCGCGCATCAT
TGCTCAGCCATGCCGCCCATTTTGCTGAATGGGTCCTACAACAGCGAGTCCCGTTGACCGCAATCGGTGAAGGAACCATC
GATCAGTTCGCGTGGCACGAATGCCGATGCGGGGAGATGACCAAGCATGGCAACAGGGTTCTGGCGTCTCACTATAAGAA
CCGTAAGCGAGGTGCCCATGCGCTTGTCCGGCACCTGATCGACGAAGGTCTGCTCCCGCCCCAAGCACCTGACGACGTCT
CCGCAGAAGACCCGCGTCTGATCAGCTTTTCGGAATGGTTGCGCCGCGAGCGCGGGGTGGCACCCGAGACCGTACGGCGC
TATTTGAACGAAGTGGGCCGCTGGCTGGACAGCCTGGGGGCAACGCCGGAGGATTACGATGCGGCGGCCATCCGTTCGAT
CATATTGGATCAAGGTGAAGAACGGTCCCAATCATCTGTGCGCAAGACGGTCACCGTGTTGCGAGCCTTCCTGCGCTTTA
CGATCGTCCAAGGCGCATGCGCCCCGTCGCTTCTGCATGCGGTGCCATCTGCTGTTCGGCGCAAGCTTTCTACAGTCCCC
CGCACGATCCCCACGGCGAAGATCGAAGAGATCCTTGCCTCCTGTCGCACCGATACGCCGGTTGAGATCCGAGACCGCGC
AATACTTCTCCTCCTCGCCCGGTTGGCCTTGCGCGCGGGAGACATCTGGCAGTTGCACCTGTCAGATATCGACTGGCGCA
CGAGTCGGTTGCGATTGCACGGCAAGGGCAGGCGTGGCGTTATGATGCCGCTGCCGCAGGATGTAGGCGATGCGCTGCTG
GTCTATATCGAAGATGCGCGTCCAGTGGTCGCGTCGAACAGGGTCTTTCTCCGAGTCCAGGCTCCTTTCACCCCGCTGCG
ATCCTCTGCCGAGATCGCCGGGATCGTTTCCCGCGTCCTGAGCCGGGGAGGTTTTACCGACTTGCCGACTGGTTCGCATG
TCTTTCGTCATTCACTGGCCTCCGCCTGGCTGCGTGGCGGTGCGGACCTTGACCTGATCGGTGCAGCGCTGCGCCACACC
TCGCGCGATACGACCGCGATCTACGCTAAGGTCGATGTTGGGATGCTGGAAGAAGTGGCTCAGCCGTGGCCGGGAGACGC
GTCATGA

Upstream 100 bases:

>100_bases
AGTTTTGGGTTTCAAGCTGTTGTTATGACGATTCATTTTTGGGTTTCCGCTTTGGATAATCATGATGCCTCTGCTCTCAA
CCGCAGAAGGACATCCCCTC

Downstream 100 bases:

>100_bases
TACATCACCATGTAGACCGCTTCGTCCAACTCAACCGCACACTCGGAAAGAAGTTCGCCGCACAGGAGACATCCTTGCGC
GCCTTCGCGGATTTCGCTGC

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 508; Mature: 508

Protein sequence:

>508_residues
MNSPSNSQRRARDRADNLALVDTYHADNPGLSQGALSAARHFLKWAQARKVSVRDLDASVVDSFLRHHCRCGRYSPNQLR
SPMYATYTRRFFRYLEDTGIVAIPNDTARLRQHLEAFAKKLESAGYSEVSRASLLSHAAHFAEWVLQQRVPLTAIGEGTI
DQFAWHECRCGEMTKHGNRVLASHYKNRKRGAHALVRHLIDEGLLPPQAPDDVSAEDPRLISFSEWLRRERGVAPETVRR
YLNEVGRWLDSLGATPEDYDAAAIRSIILDQGEERSQSSVRKTVTVLRAFLRFTIVQGACAPSLLHAVPSAVRRKLSTVP
RTIPTAKIEEILASCRTDTPVEIRDRAILLLLARLALRAGDIWQLHLSDIDWRTSRLRLHGKGRRGVMMPLPQDVGDALL
VYIEDARPVVASNRVFLRVQAPFTPLRSSAEIAGIVSRVLSRGGFTDLPTGSHVFRHSLASAWLRGGADLDLIGAALRHT
SRDTTAIYAKVDVGMLEEVAQPWPGDAS

Sequences:

>Translated_508_residues
MNSPSNSQRRARDRADNLALVDTYHADNPGLSQGALSAARHFLKWAQARKVSVRDLDASVVDSFLRHHCRCGRYSPNQLR
SPMYATYTRRFFRYLEDTGIVAIPNDTARLRQHLEAFAKKLESAGYSEVSRASLLSHAAHFAEWVLQQRVPLTAIGEGTI
DQFAWHECRCGEMTKHGNRVLASHYKNRKRGAHALVRHLIDEGLLPPQAPDDVSAEDPRLISFSEWLRRERGVAPETVRR
YLNEVGRWLDSLGATPEDYDAAAIRSIILDQGEERSQSSVRKTVTVLRAFLRFTIVQGACAPSLLHAVPSAVRRKLSTVP
RTIPTAKIEEILASCRTDTPVEIRDRAILLLLARLALRAGDIWQLHLSDIDWRTSRLRLHGKGRRGVMMPLPQDVGDALL
VYIEDARPVVASNRVFLRVQAPFTPLRSSAEIAGIVSRVLSRGGFTDLPTGSHVFRHSLASAWLRGGADLDLIGAALRHT
SRDTTAIYAKVDVGMLEEVAQPWPGDAS
>Mature_508_residues
MNSPSNSQRRARDRADNLALVDTYHADNPGLSQGALSAARHFLKWAQARKVSVRDLDASVVDSFLRHHCRCGRYSPNQLR
SPMYATYTRRFFRYLEDTGIVAIPNDTARLRQHLEAFAKKLESAGYSEVSRASLLSHAAHFAEWVLQQRVPLTAIGEGTI
DQFAWHECRCGEMTKHGNRVLASHYKNRKRGAHALVRHLIDEGLLPPQAPDDVSAEDPRLISFSEWLRRERGVAPETVRR
YLNEVGRWLDSLGATPEDYDAAAIRSIILDQGEERSQSSVRKTVTVLRAFLRFTIVQGACAPSLLHAVPSAVRRKLSTVP
RTIPTAKIEEILASCRTDTPVEIRDRAILLLLARLALRAGDIWQLHLSDIDWRTSRLRLHGKGRRGVMMPLPQDVGDALL
VYIEDARPVVASNRVFLRVQAPFTPLRSSAEIAGIVSRVLSRGGFTDLPTGSHVFRHSLASAWLRGGADLDLIGAALRHT
SRDTTAIYAKVDVGMLEEVAQPWPGDAS

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=301, Percent_Identity=28.2392026578073, Blast_Score=86, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 56662; Mature: 56662

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSPSNSQRRARDRADNLALVDTYHADNPGLSQGALSAARHFLKWAQARKVSVRDLDASV
CCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCHHH
VDSFLRHHCRCGRYSPNQLRSPMYATYTRRFFRYLEDTGIVAIPNDTARLRQHLEAFAKK
HHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHH
LESAGYSEVSRASLLSHAAHFAEWVLQQRVPLTAIGEGTIDQFAWHECRCGEMTKHGNRV
HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHCCCCCHHHCCCHH
LASHYKNRKRGAHALVRHLIDEGLLPPQAPDDVSAEDPRLISFSEWLRRERGVAPETVRR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECHHHHHHHHCCCCHHHHHH
YLNEVGRWLDSLGATPEDYDAAAIRSIILDQGEERSQSSVRKTVTVLRAFLRFTIVQGAC
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCH
APSLLHAVPSAVRRKLSTVPRTIPTAKIEEILASCRTDTPVEIRDRAILLLLARLALRAG
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC
DIWQLHLSDIDWRTSRLRLHGKGRRGVMMPLPQDVGDALLVYIEDARPVVASNRVFLRVQ
CEEEEECCCCCCCHHHEEEECCCCCCEECCCCCCCCCEEEEEECCCCCEEECCEEEEEEE
APFTPLRSSAEIAGIVSRVLSRGGFTDLPTGSHVFRHSLASAWLRGGADLDLIGAALRHT
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
SRDTTAIYAKVDVGMLEEVAQPWPGDAS
CCCCEEEEEECCHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNSPSNSQRRARDRADNLALVDTYHADNPGLSQGALSAARHFLKWAQARKVSVRDLDASV
CCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCHHH
VDSFLRHHCRCGRYSPNQLRSPMYATYTRRFFRYLEDTGIVAIPNDTARLRQHLEAFAKK
HHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHH
LESAGYSEVSRASLLSHAAHFAEWVLQQRVPLTAIGEGTIDQFAWHECRCGEMTKHGNRV
HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHCCCCCHHHCCCHH
LASHYKNRKRGAHALVRHLIDEGLLPPQAPDDVSAEDPRLISFSEWLRRERGVAPETVRR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECHHHHHHHHCCCCHHHHHH
YLNEVGRWLDSLGATPEDYDAAAIRSIILDQGEERSQSSVRKTVTVLRAFLRFTIVQGAC
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCH
APSLLHAVPSAVRRKLSTVPRTIPTAKIEEILASCRTDTPVEIRDRAILLLLARLALRAG
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC
DIWQLHLSDIDWRTSRLRLHGKGRRGVMMPLPQDVGDALLVYIEDARPVVASNRVFLRVQ
CEEEEECCCCCCCHHHEEEECCCCCCEECCCCCCCCCEEEEEECCCCCEEECCEEEEEEE
APFTPLRSSAEIAGIVSRVLSRGGFTDLPTGSHVFRHSLASAWLRGGADLDLIGAALRHT
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
SRDTTAIYAKVDVGMLEEVAQPWPGDAS
CCCCEEEEEECCHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]