Click here to switch to the map view.

The map label for this gene is surF1

Identifier: 158423726

GI number: 158423726

Start: 2418785

End: 2419555

Strand: Direct

Name: surF1

Synonym: AZC_2102

Alternate gene names: NA

Gene position: 2418785-2419555 (Clockwise)

Preceding gene: 158423725

Following gene: 158423727

Centisome position: 45.04

GC content: 67.19

Gene sequence:

>771_bases
GTGAGTGAGGACCGGCCGGAGGCTGCGGGCTCTGCCCGCGGCACCGACAATCAGACGGACGGGGCCAAAAGCCCCGTCCG
TGCTGTTTGGGCCATCGGTTTCCTGCTGGTCCTTGCGGTCGTCTTTTTCTCGCTCGGCACGTGGCAGGTCTATCGGCGGG
CCTGGAAGCTCGATCTGATCCAGCGGGTGGAGACCCGCATCCATGCCGCCCCTTCGGCGCCACCAGGCCCCAACGCCTGG
CCGGGTGTGACGGCAGCTTCCGATGAATATCGCCATGTGACTGTGACCGGCCGCTTCATTCCGGACCGGGAAGCCCTGTC
GCTGGCCGTGACGGAGCTCGGCGGCGGGTTCTGGGTGATGGCGCCGTTCCGGACCGATGCGGGTTATGTGGTGCTTGTGA
ACCGGGGCTATGTCCCGCCGGAAAAGAGGGACCCCGCCAGCCGCGGCGCGGCGCTGACCGACGCGGAAACCCGTGTCACC
GGGCTTCTGCGCATCAGCGAGCCCAAGGGCGGCTTCCTGCGCTCGAATGATCCTGCCGCCGGCCGCTGGTATTCCCGCGA
TGTGGCTGAGATGGCGGAGACCTTTGGCCTGTCCGACGTCGCGCCCTATTTCATCGACGCCGAAGCGGGCGCGCCGAACA
CCTATCCCGTCGGCGGCCTCACCGTGGTGCGCTTCCCGAACAGCCATCTGGTCTATGCGCTGACGTGGTTTTCCCTTTGC
GCTATGGCTCTGGGTGCGGCGGTTCTGGTGTGGAGGCGCCGCGTCCGATAG

Upstream 100 bases:

>100_bases
TCACCGTCATCGTGGTGGTGATCGCGCTGAGCGGCTCTCTGTGGGTCATGTACCATCTGAACGCCAACATGATGCCGTCC
CACGACATGCGGATCGCTCC

Downstream 100 bases:

>100_bases
GAGCGCGCCGCCATGCCCGTCGCCCAGCAAGACACCAGCGGGAACAAGAACCTCTTCCTGCTGATCCAGCTCCGCTGGCT
GGCCGTGGCGGGGCAGGTCT

Product: SurF1 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MSEDRPEAAGSARGTDNQTDGAKSPVRAVWAIGFLLVLAVVFFSLGTWQVYRRAWKLDLIQRVETRIHAAPSAPPGPNAW
PGVTAASDEYRHVTVTGRFIPDREALSLAVTELGGGFWVMAPFRTDAGYVVLVNRGYVPPEKRDPASRGAALTDAETRVT
GLLRISEPKGGFLRSNDPAAGRWYSRDVAEMAETFGLSDVAPYFIDAEAGAPNTYPVGGLTVVRFPNSHLVYALTWFSLC
AMALGAAVLVWRRRVR

Sequences:

>Translated_256_residues
MSEDRPEAAGSARGTDNQTDGAKSPVRAVWAIGFLLVLAVVFFSLGTWQVYRRAWKLDLIQRVETRIHAAPSAPPGPNAW
PGVTAASDEYRHVTVTGRFIPDREALSLAVTELGGGFWVMAPFRTDAGYVVLVNRGYVPPEKRDPASRGAALTDAETRVT
GLLRISEPKGGFLRSNDPAAGRWYSRDVAEMAETFGLSDVAPYFIDAEAGAPNTYPVGGLTVVRFPNSHLVYALTWFSLC
AMALGAAVLVWRRRVR
>Mature_255_residues
SEDRPEAAGSARGTDNQTDGAKSPVRAVWAIGFLLVLAVVFFSLGTWQVYRRAWKLDLIQRVETRIHAAPSAPPGPNAWP
GVTAASDEYRHVTVTGRFIPDREALSLAVTELGGGFWVMAPFRTDAGYVVLVNRGYVPPEKRDPASRGAALTDAETRVTG
LLRISEPKGGFLRSNDPAAGRWYSRDVAEMAETFGLSDVAPYFIDAEAGAPNTYPVGGLTVVRFPNSHLVYALTWFSLCA
MALGAAVLVWRRRVR

Specific function: Unknown

COG id: COG3346

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SURF1 family [H]

Homologues:

Organism=Homo sapiens, GI4507319, Length=226, Percent_Identity=36.7256637168142, Blast_Score=125, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI17553856, Length=246, Percent_Identity=30.4878048780488, Blast_Score=113, Evalue=8e-26,
Organism=Saccharomyces cerevisiae, GI6321550, Length=177, Percent_Identity=29.9435028248588, Blast_Score=81, Evalue=2e-16,
Organism=Drosophila melanogaster, GI17864366, Length=243, Percent_Identity=32.5102880658436, Blast_Score=108, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002994 [H]

Pfam domain/function: PF02104 SURF1 [H]

EC number: NA

Molecular weight: Translated: 27865; Mature: 27734

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: PS50895 SURF1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEDRPEAAGSARGTDNQTDGAKSPVRAVWAIGFLLVLAVVFFSLGTWQVYRRAWKLDLI
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
QRVETRIHAAPSAPPGPNAWPGVTAASDEYRHVTVTGRFIPDREALSLAVTELGGGFWVM
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHCCCCEEEE
APFRTDAGYVVLVNRGYVPPEKRDPASRGAALTDAETRVTGLLRISEPKGGFLRSNDPAA
EEEECCCCEEEEEECCCCCCCCCCCHHCCCCCCCCHHHEEEEEEEECCCCCCEECCCCCC
GRWYSRDVAEMAETFGLSDVAPYFIDAEAGAPNTYPVGGLTVVRFPNSHLVYALTWFSLC
CCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCEEHHHHHHHHH
AMALGAAVLVWRRRVR
HHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SEDRPEAAGSARGTDNQTDGAKSPVRAVWAIGFLLVLAVVFFSLGTWQVYRRAWKLDLI
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
QRVETRIHAAPSAPPGPNAWPGVTAASDEYRHVTVTGRFIPDREALSLAVTELGGGFWVM
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHCCCCEEEE
APFRTDAGYVVLVNRGYVPPEKRDPASRGAALTDAETRVTGLLRISEPKGGFLRSNDPAA
EEEECCCCEEEEEECCCCCCCCCCCHHCCCCCCCCHHHEEEEEEEECCCCCCEECCCCCC
GRWYSRDVAEMAETFGLSDVAPYFIDAEAGAPNTYPVGGLTVVRFPNSHLVYALTWFSLC
CCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCEEHHHHHHHHH
AMALGAAVLVWRRRVR
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA