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The map label for this gene is ydcN [H]

Identifier: 158423451

GI number: 158423451

Start: 2090208

End: 2090903

Strand: Direct

Name: ydcN [H]

Synonym: AZC_1827

Alternate gene names: 158423451

Gene position: 2090208-2090903 (Clockwise)

Preceding gene: 158423450

Following gene: 158423460

Centisome position: 38.93

GC content: 65.52

Gene sequence:

>696_bases
TTGCTTGCTCCGTGCCGCTCCTTGCCGCTATCGTCCGAGGAAACGGACAAGTGTTCGGTAAAAGGGAGCGTCATGGCGCA
GCGCGAGAAACCCCCGGAGCGGGGCAGCGGATTGGAACCGGGCGCCCATGCGATCACGGGCCAGCTTGGCAAGACCATCC
AGCGGCTGCGGAAGGCCTATAATCTCTCGCTGTCGGACCTCGCCGAACAGTCGGGCGTGGCCAAGTCCATCATCAGCCAG
ATCGAGCGCAACGAGACCAATCCGACGCTCGCCACCGTCTGGCGCCTGTCGCAGGCGCTGGATGTGACGGTGGAGCGGGT
TTTGGCCTCCTCCGACGAGGCGCCCTTCGTCGAGAAGCTGACCCGCGCCGACACGCCCATGCTCCAGTCGGAGGACGGCC
TGTGCCGCCTCGCCATCATCGGCTGGATCAAGACGGTGGAGTGGCTGCAATATTACGACTTCCACGCAGAGCCTGGCGGC
GTCCTCGATTCCGAGGGGCATCAGCTCGGGTCCATCGAGTGCCTCTCCGTGCTGGAGGGCGAGCTTGAGGTGGAAGTGGG
CGGCGTGATCGAGACCGCCAAGGCCGGTGAGACGCTGCGCTATCGCTGCGACCGCCAGCACGTCATCCGCAATGTCGGCG
GCGGGCACGCCCATGCGCTGATGGTCTGCCTGCTCAAGGCAGCTGTGCTCGACTGA

Upstream 100 bases:

>100_bases
TGCCATTGCCGCCGCCGATCAACTGGAGGTGGGGCAGGGGCATGGTCCCGTCCACCACTTCCATGCCCTGTGGGGGCAGG
CGGGGCTCTGAGGGCCGCTT

Downstream 100 bases:

>100_bases
GCGGCCCGATGGCGGCGCGGGCGCCGCCATCGCGTTCTTCCGGGTCCATTCGGATCAGTACACGTCCCGCCGGTAACGGC
CGTCCTGCGCGATGGCTTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MLAPCRSLPLSSEETDKCSVKGSVMAQREKPPERGSGLEPGAHAITGQLGKTIQRLRKAYNLSLSDLAEQSGVAKSIISQ
IERNETNPTLATVWRLSQALDVTVERVLASSDEAPFVEKLTRADTPMLQSEDGLCRLAIIGWIKTVEWLQYYDFHAEPGG
VLDSEGHQLGSIECLSVLEGELEVEVGGVIETAKAGETLRYRCDRQHVIRNVGGGHAHALMVCLLKAAVLD

Sequences:

>Translated_231_residues
MLAPCRSLPLSSEETDKCSVKGSVMAQREKPPERGSGLEPGAHAITGQLGKTIQRLRKAYNLSLSDLAEQSGVAKSIISQ
IERNETNPTLATVWRLSQALDVTVERVLASSDEAPFVEKLTRADTPMLQSEDGLCRLAIIGWIKTVEWLQYYDFHAEPGG
VLDSEGHQLGSIECLSVLEGELEVEVGGVIETAKAGETLRYRCDRQHVIRNVGGGHAHALMVCLLKAAVLD
>Mature_231_residues
MLAPCRSLPLSSEETDKCSVKGSVMAQREKPPERGSGLEPGAHAITGQLGKTIQRLRKAYNLSLSDLAEQSGVAKSIISQ
IERNETNPTLATVWRLSQALDVTVERVLASSDEAPFVEKLTRADTPMLQSEDGLCRLAIIGWIKTVEWLQYYDFHAEPGG
VLDSEGHQLGSIECLSVLEGELEVEVGGVIETAKAGETLRYRCDRQHVIRNVGGGHAHALMVCLLKAAVLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=179, Percent_Identity=30.7262569832402, Blast_Score=90, Evalue=1e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 25103; Mature: 25103

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAPCRSLPLSSEETDKCSVKGSVMAQREKPPERGSGLEPGAHAITGQLGKTIQRLRKAY
CCCCCCCCCCCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
NLSLSDLAEQSGVAKSIISQIERNETNPTLATVWRLSQALDVTVERVLASSDEAPFVEKL
CCCHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
TRADTPMLQSEDGLCRLAIIGWIKTVEWLQYYDFHAEPGGVLDSEGHQLGSIECLSVLEG
HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCC
ELEVEVGGVIETAKAGETLRYRCDRQHVIRNVGGGHAHALMVCLLKAAVLD
CCEEEECCCHHHHHCCCHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLAPCRSLPLSSEETDKCSVKGSVMAQREKPPERGSGLEPGAHAITGQLGKTIQRLRKAY
CCCCCCCCCCCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
NLSLSDLAEQSGVAKSIISQIERNETNPTLATVWRLSQALDVTVERVLASSDEAPFVEKL
CCCHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
TRADTPMLQSEDGLCRLAIIGWIKTVEWLQYYDFHAEPGGVLDSEGHQLGSIECLSVLEG
HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCC
ELEVEVGGVIETAKAGETLRYRCDRQHVIRNVGGGHAHALMVCLLKAAVLD
CCEEEECCCHHHHHCCCHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]