| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is kefA [H]
Identifier: 157963205
GI number: 157963205
Start: 4143630
End: 4146215
Strand: Direct
Name: kefA [H]
Synonym: Spea_3390
Alternate gene names: 157963205
Gene position: 4143630-4146215 (Clockwise)
Preceding gene: 157963204
Following gene: 157963206
Centisome position: 80.08
GC content: 42.27
Gene sequence:
>2586_bases TTGATTGAATTACAAGATAAATTAACCCGAGTCGAGCAGGCCTCAGTTAAAACACTCATTGAACAAGCGAGGCAGGTTAG CGAGGAGGCGCTAGGAGATACGGAGGAGCAACACCAAGTAGAGCTAGTCAAAGCTTACACTTTAGAACTAGAAGAGGTAC TGGATAAGATAGATAAAACGCGAATTATGTATCAAAAAGTTGAGTCTGAGCAACGCAGTTTAGCGGATGACCAACGCTTG ATAAAAGATAACTTAGCTTGGTTACGCGATAGCACGGTTTTTGGTGCTTCCATCCGAGCACAGTTACAAAGGTTACCCTC CAAAATAGACACGCAATATATTCCCGATGAAATTGCCAAAGCCCACATTCGAAAATACGAAATAGGCCAATTAAAAGATG ATGCTGAGCAACCAAGTGCAACTTCTAGAGATAAAAAAAACGAAGAAGGTCCAGACAAGTTAGCCTCGTTATTAAATAAA TTATTAGACCAATTAACGAAAGATTATGACAAGCTAATTTCAGCACTGAGTCAGCTAAAGTTGGTCAAGGATCAATATGC TCAAACAGTGGAGAAGGCACGTAGTTTTTTAAAGCAGCAACAGCTATGGACACGCAGTAACGTGCCCATATGGCAACACC TAACTGACTTCAATACTGTGACCTGGTTCGGCTCCAAGACACCAATTAAAAATATGTTAGATGAGCTCCCACAAGGACTG TCTGTATCGCTGTTAACTGTATTTGCTTTGTACACGATTCTTTTTATCTATAGCACTAGTCGGCTGAATCAATATGCCGC TCAGCGTAAGGATGAGCTTCAAAAAGTATTTGGTCACCCGCTGAAAGATCGATTTCATAATACTGTTTTGTTATTTTTAA TCGCCATTATACGCGCGCTTATTCTGCCTATTTGGTATGTAATAACCGCTTGGGGACTGTATTGGTTTTGGCCAGTTACG ACCTCAAATGAGCTCAGTACACTGATCTTTGCCAGCGCATCTGGCGTGTTTGTCGTCGAACTCATCCACGCCTTAAGCTA TAAACAAGGTGTTCTCGCACTCCATCTAAACTGGCCAGAGCAAATTTGCTCATACCTACATAAAGGAAGTCAACGGATAC TCTGGCCATTTGTCATTTTGCTACTAAGTATTTTTGCTGCAGAACTGGTTTCAGGGATCCATGAAGCGGAAATATCTCGC GTATTATTCCTATTACTAATGGGAGTAATGATGGCTGTCTTTATTTCACTGCTGAAAGAAAAACATCTCCCCTCAACTTT ACCGTCCCCACTTAATAGAGGCTTCTCCCTCTATCTATTTCGTTTCATCGTTATCGGTTCGTTTATTACTATTATCGTTA TGGCCGTTATGGGGCTCTATATTGCTTCATGGATCTTACTTATCTATCAACAGTTAACCATTTACGTAGTGTTAGCAGTG CTGTTTACCTATCAAATGGGAGAACGCTGGCTAAAGATAGAGCATCGGCAGCTCAGCTATCAGCGGCTGCTAGCGCGGCG TGAAGAGCTCATTGCTCAACAACAAGAGCAAGCAGATGAGTCACCCGAAATTACTGAATTAAGGGAAACTATTCCTGATG TAGAAGAGCGCAGTTTAGCGAGTGAACAAGTTAGTGAACAGTCACTAACACTGTTGCGTGGCTTGTCCTTAATTGGCTTA GTGGCTGCAGTGTTAACCTTATGGTCAAGCGCCTTAGAAATGACCAGTTGGTTAGATGCCATTGTGGTGTGGCAAGTAAA TGAAATGACTCAAACCGGCGTAACCCTGGTGGATGTGACTCTGCAATCATTGATTTATGCAGTGGTCACATTAATCGTAA CCTTTGTTGGTGTACGAAACTTACCAGGTATTTTGGAACTGTTAATCCTGCGTCGTCTCGACTTAGCGCCTGGCGCCGGC TATGCGGTTACCACTCTATTGCGCTATGTAATTTTAATGGCAGGCTTAATGGGTGCGTTTTCCATATTAGGCTTTCAATG GTCTAAACTGCAATGGCTAGTTGCCGCATTCGGTGTAGGCTTAGGATTTGGCTTACAAGAAATTTTCGCCAACTTTATTT CCGGTTTAATTTTACTGTTTGAACGACCTATCCGTATTGGGGACATTGTTACGATTAATGATTTATCGGGAACGGTGAGC AAAATTCAAACACGCGCCACCACCATTATTGATTGGGACAACAAAGAAATCGTGGTGCCCAATAAAACCTTTATTACAGA AAAGCTCATTAACTGGTCGCTAACTAGCCCTATTACCAGAATCGTGATCCCTATTGGTGTCGCTTATGGTTCTGATATTG ATAAGGTGGAGAGCTTACTGTATCAAATCGCGGATGAGCACCCACTCGTACTACCTGATCCGCAACCTTCTGTGGTGTTC TTATCTTTTGGAGCTAGCAGTCTCGACTTTGAATTAAGAGCCCATATCACTGCGATTGAACTACGCCTATCAACGGTTCA TATCATCAACAAAAATATTAATCGCTTGTTTCGAGAACACGAGATTGAAATTGCCTTTCCGCAAATGGATGTGCATGTTC GTGATTTGCCGCCAAAAGATACATGA
Upstream 100 bases:
>100_bases AAGTGACCTCTGCTCAGTTACAGAGCTTAGATGAACGCACTGAATTACTGATTTAGAGCAGCAATTACTGAACCAAAAAA TTCAATTAGCCTCGCCAATT
Downstream 100 bases:
>100_bases GTTTAATGTTTAGTGATGAGCTATTAATTGGCGATATCGATTCTGCAGGGAGAAAGACTTAAACAAAAATAAGCCTGCTA CTTGCTGGTGATTTTACAAT
Product: mechanosensitive ion channel protein MscS
Products: NA
Alternate protein names: Protein AefA [H]
Number of amino acids: Translated: 861; Mature: 861
Protein sequence:
>861_residues MIELQDKLTRVEQASVKTLIEQARQVSEEALGDTEEQHQVELVKAYTLELEEVLDKIDKTRIMYQKVESEQRSLADDQRL IKDNLAWLRDSTVFGASIRAQLQRLPSKIDTQYIPDEIAKAHIRKYEIGQLKDDAEQPSATSRDKKNEEGPDKLASLLNK LLDQLTKDYDKLISALSQLKLVKDQYAQTVEKARSFLKQQQLWTRSNVPIWQHLTDFNTVTWFGSKTPIKNMLDELPQGL SVSLLTVFALYTILFIYSTSRLNQYAAQRKDELQKVFGHPLKDRFHNTVLLFLIAIIRALILPIWYVITAWGLYWFWPVT TSNELSTLIFASASGVFVVELIHALSYKQGVLALHLNWPEQICSYLHKGSQRILWPFVILLLSIFAAELVSGIHEAEISR VLFLLLMGVMMAVFISLLKEKHLPSTLPSPLNRGFSLYLFRFIVIGSFITIIVMAVMGLYIASWILLIYQQLTIYVVLAV LFTYQMGERWLKIEHRQLSYQRLLARREELIAQQQEQADESPEITELRETIPDVEERSLASEQVSEQSLTLLRGLSLIGL VAAVLTLWSSALEMTSWLDAIVVWQVNEMTQTGVTLVDVTLQSLIYAVVTLIVTFVGVRNLPGILELLILRRLDLAPGAG YAVTTLLRYVILMAGLMGAFSILGFQWSKLQWLVAAFGVGLGFGLQEIFANFISGLILLFERPIRIGDIVTINDLSGTVS KIQTRATTIIDWDNKEIVVPNKTFITEKLINWSLTSPITRIVIPIGVAYGSDIDKVESLLYQIADEHPLVLPDPQPSVVF LSFGASSLDFELRAHITAIELRLSTVHIINKNINRLFREHEIEIAFPQMDVHVRDLPPKDT
Sequences:
>Translated_861_residues MIELQDKLTRVEQASVKTLIEQARQVSEEALGDTEEQHQVELVKAYTLELEEVLDKIDKTRIMYQKVESEQRSLADDQRL IKDNLAWLRDSTVFGASIRAQLQRLPSKIDTQYIPDEIAKAHIRKYEIGQLKDDAEQPSATSRDKKNEEGPDKLASLLNK LLDQLTKDYDKLISALSQLKLVKDQYAQTVEKARSFLKQQQLWTRSNVPIWQHLTDFNTVTWFGSKTPIKNMLDELPQGL SVSLLTVFALYTILFIYSTSRLNQYAAQRKDELQKVFGHPLKDRFHNTVLLFLIAIIRALILPIWYVITAWGLYWFWPVT TSNELSTLIFASASGVFVVELIHALSYKQGVLALHLNWPEQICSYLHKGSQRILWPFVILLLSIFAAELVSGIHEAEISR VLFLLLMGVMMAVFISLLKEKHLPSTLPSPLNRGFSLYLFRFIVIGSFITIIVMAVMGLYIASWILLIYQQLTIYVVLAV LFTYQMGERWLKIEHRQLSYQRLLARREELIAQQQEQADESPEITELRETIPDVEERSLASEQVSEQSLTLLRGLSLIGL VAAVLTLWSSALEMTSWLDAIVVWQVNEMTQTGVTLVDVTLQSLIYAVVTLIVTFVGVRNLPGILELLILRRLDLAPGAG YAVTTLLRYVILMAGLMGAFSILGFQWSKLQWLVAAFGVGLGFGLQEIFANFISGLILLFERPIRIGDIVTINDLSGTVS KIQTRATTIIDWDNKEIVVPNKTFITEKLINWSLTSPITRIVIPIGVAYGSDIDKVESLLYQIADEHPLVLPDPQPSVVF LSFGASSLDFELRAHITAIELRLSTVHIINKNINRLFREHEIEIAFPQMDVHVRDLPPKDT >Mature_861_residues MIELQDKLTRVEQASVKTLIEQARQVSEEALGDTEEQHQVELVKAYTLELEEVLDKIDKTRIMYQKVESEQRSLADDQRL IKDNLAWLRDSTVFGASIRAQLQRLPSKIDTQYIPDEIAKAHIRKYEIGQLKDDAEQPSATSRDKKNEEGPDKLASLLNK LLDQLTKDYDKLISALSQLKLVKDQYAQTVEKARSFLKQQQLWTRSNVPIWQHLTDFNTVTWFGSKTPIKNMLDELPQGL SVSLLTVFALYTILFIYSTSRLNQYAAQRKDELQKVFGHPLKDRFHNTVLLFLIAIIRALILPIWYVITAWGLYWFWPVT TSNELSTLIFASASGVFVVELIHALSYKQGVLALHLNWPEQICSYLHKGSQRILWPFVILLLSIFAAELVSGIHEAEISR VLFLLLMGVMMAVFISLLKEKHLPSTLPSPLNRGFSLYLFRFIVIGSFITIIVMAVMGLYIASWILLIYQQLTIYVVLAV LFTYQMGERWLKIEHRQLSYQRLLARREELIAQQQEQADESPEITELRETIPDVEERSLASEQVSEQSLTLLRGLSLIGL VAAVLTLWSSALEMTSWLDAIVVWQVNEMTQTGVTLVDVTLQSLIYAVVTLIVTFVGVRNLPGILELLILRRLDLAPGAG YAVTTLLRYVILMAGLMGAFSILGFQWSKLQWLVAAFGVGLGFGLQEIFANFISGLILLFERPIRIGDIVTINDLSGTVS KIQTRATTIIDWDNKEIVVPNKTFITEKLINWSLTSPITRIVIPIGVAYGSDIDKVESLLYQIADEHPLVLPDPQPSVVF LSFGASSLDFELRAHITAIELRLSTVHIINKNINRLFREHEIEIAFPQMDVHVRDLPPKDT
Specific function: Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell, although it does not appear to have a major role in osmolarity regulation. Form
COG id: COG3264
COG function: function code M; Small-conductance mechanosensitive channel
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mscS (TC 1.A.23) family [H]
Homologues:
Organism=Escherichia coli, GI1786670, Length=826, Percent_Identity=34.6246973365617, Blast_Score=383, Evalue=1e-107, Organism=Escherichia coli, GI2367355, Length=837, Percent_Identity=30.8243727598566, Blast_Score=362, Evalue=1e-101, Organism=Escherichia coli, GI1789291, Length=253, Percent_Identity=31.6205533596838, Blast_Score=114, Evalue=2e-26, Organism=Escherichia coli, GI1787591, Length=204, Percent_Identity=25.9803921568627, Blast_Score=65, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010920 - InterPro: IPR011066 - InterPro: IPR006685 - InterPro: IPR006686 - InterPro: IPR011014 [H]
Pfam domain/function: PF00924 MS_channel [H]
EC number: NA
Molecular weight: Translated: 97866; Mature: 97866
Theoretical pI: Translated: 5.90; Mature: 5.90
Prosite motif: PS01246 UPF0003
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIELQDKLTRVEQASVKTLIEQARQVSEEALGDTEEQHQVELVKAYTLELEEVLDKIDKT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH RIMYQKVESEQRSLADDQRLIKDNLAWLRDSTVFGASIRAQLQRLPSKIDTQYIPDEIAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH AHIRKYEIGQLKDDAEQPSATSRDKKNEEGPDKLASLLNKLLDQLTKDYDKLISALSQLK HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVKDQYAQTVEKARSFLKQQQLWTRSNVPIWQHLTDFNTVTWFGSKTPIKNMLDELPQGL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEECCCCCCHHHHHHHCCCCC SVSLLTVFALYTILFIYSTSRLNQYAAQRKDELQKVFGHPLKDRFHNTVLLFLIAIIRAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH ILPIWYVITAWGLYWFWPVTTSNELSTLIFASASGVFVVELIHALSYKQGVLALHLNWPE HHHHHHHHHHHHHHHEEECCCCCCHHHHHEECCCCHHHHHHHHHHHHCCCEEEEEECCHH QICSYLHKGSQRILWPFVILLLSIFAAELVSGIHEAEISRVLFLLLMGVMMAVFISLLKE HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KHLPSTLPSPLNRGFSLYLFRFIVIGSFITIIVMAVMGLYIASWILLIYQQLTIYVVLAV HCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFTYQMGERWLKIEHRQLSYQRLLARREELIAQQQEQADESPEITELRETIPDVEERSLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHH SEQVSEQSLTLLRGLSLIGLVAAVLTLWSSALEMTSWLDAIVVWQVNEMTQTGVTLVDVT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHCCCHHHHHH LQSLIYAVVTLIVTFVGVRNLPGILELLILRRLDLAPGAGYAVTTLLRYVILMAGLMGAF HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH SILGFQWSKLQWLVAAFGVGLGFGLQEIFANFISGLILLFERPIRIGDIVTINDLSGTVS HHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHH KIQTRATTIIDWDNKEIVVPNKTFITEKLINWSLTSPITRIVIPIGVAYGSDIDKVESLL HHHHHHHEEEECCCCEEECCCHHHHHHHHHCCCHHCHHHHHHHHHHHHCCCCHHHHHHHH YQIADEHPLVLPDPQPSVVFLSFGASSLDFELRAHITAIELRLSTVHIINKNINRLFREH HHHHCCCCEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC EIEIAFPQMDVHVRDLPPKDT CCEEECCCCCEEEECCCCCCC >Mature Secondary Structure MIELQDKLTRVEQASVKTLIEQARQVSEEALGDTEEQHQVELVKAYTLELEEVLDKIDKT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH RIMYQKVESEQRSLADDQRLIKDNLAWLRDSTVFGASIRAQLQRLPSKIDTQYIPDEIAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH AHIRKYEIGQLKDDAEQPSATSRDKKNEEGPDKLASLLNKLLDQLTKDYDKLISALSQLK HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVKDQYAQTVEKARSFLKQQQLWTRSNVPIWQHLTDFNTVTWFGSKTPIKNMLDELPQGL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEECCCCCCHHHHHHHCCCCC SVSLLTVFALYTILFIYSTSRLNQYAAQRKDELQKVFGHPLKDRFHNTVLLFLIAIIRAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH ILPIWYVITAWGLYWFWPVTTSNELSTLIFASASGVFVVELIHALSYKQGVLALHLNWPE HHHHHHHHHHHHHHHEEECCCCCCHHHHHEECCCCHHHHHHHHHHHHCCCEEEEEECCHH QICSYLHKGSQRILWPFVILLLSIFAAELVSGIHEAEISRVLFLLLMGVMMAVFISLLKE HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KHLPSTLPSPLNRGFSLYLFRFIVIGSFITIIVMAVMGLYIASWILLIYQQLTIYVVLAV HCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFTYQMGERWLKIEHRQLSYQRLLARREELIAQQQEQADESPEITELRETIPDVEERSLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHH SEQVSEQSLTLLRGLSLIGLVAAVLTLWSSALEMTSWLDAIVVWQVNEMTQTGVTLVDVT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHCCCHHHHHH LQSLIYAVVTLIVTFVGVRNLPGILELLILRRLDLAPGAGYAVTTLLRYVILMAGLMGAF HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH SILGFQWSKLQWLVAAFGVGLGFGLQEIFANFISGLILLFERPIRIGDIVTINDLSGTVS HHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHH KIQTRATTIIDWDNKEIVVPNKTFITEKLINWSLTSPITRIVIPIGVAYGSDIDKVESLL HHHHHHHEEEECCCCEEECCCHHHHHHHHHCCCHHCHHHHHHHHHHHHCCCCHHHHHHHH YQIADEHPLVLPDPQPSVVFLSFGASSLDFELRAHITAIELRLSTVHIINKNINRLFREH HHHHCCCCEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC EIEIAFPQMDVHVRDLPPKDT CCEEECCCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503; 10202137 [H]