| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is 157963154
Identifier: 157963154
GI number: 157963154
Start: 4080372
End: 4080797
Strand: Direct
Name: 157963154
Synonym: Spea_3338
Alternate gene names: NA
Gene position: 4080372-4080797 (Clockwise)
Preceding gene: 157963152
Following gene: 157963155
Centisome position: 78.85
GC content: 40.85
Gene sequence:
>426_bases ATGAGTATTATAGAGCGAGTATTTCACTCTGTATTGTTTGAAGTACTAGCGGTGACATTTTCGATTATTGGATTATCGAT TTTTACCGATTTCGATGTCAAATCACTATCTGGAATGATGATAGTTGTTGCGACCATAGCAATGATCTGGAACTTTATAT TCAACTGGGGGTTTGATCGTGTTATCACTGGCGATAAAGAGAAGCGCCCGTTAAAAGTTCGAGTTGTACACGTCAGCTTA TTTGAAGTGGGCTTACTATTTTTCACCGTGCCTGTGATGGCTTACATACTCAATATAGGCATAGTAGAAGCGCTAATTAT GGATCTCGGCGTGACTGTGTTTATCACTATTTATGCCTTTACCTATAACTTTATCTACGATCACACCCGGGCTTTTATCA TCCGCAGCCGCGCTGTCGCCTGTTGA
Upstream 100 bases:
>100_bases GCTGTTAACTTTGCCTACTCTTTTTTCCTGTAATAATCAGCGCCCTTTTACAGCCTTTAGGGGCTGACATAAATACATGC GACGTTTTTTGGAGTAAGTA
Downstream 100 bases:
>100_bases TTCTGTTCTGTTCTGTTCTGTTCTGTTCTGTAGTTACAGACTATTGATTGAGCTCACTTGAATTAATCATTGCTAACTCT TGTTTATTGACGAAGCTCGC
Product: transmembrane pair domain-containing protein
Products: NA
Alternate protein names: Transmembrane Pair Domain Protein; Transmembrane Pair; Transmembrane Pair Permease Of Facilitator Superfamily; Bacterial Transmembrane Pair Family; Outer Membrane Protein; Transmembrane Pair Protein; Transmembrane Pair Family Protein
Number of amino acids: Translated: 141; Mature: 140
Protein sequence:
>141_residues MSIIERVFHSVLFEVLAVTFSIIGLSIFTDFDVKSLSGMMIVVATIAMIWNFIFNWGFDRVITGDKEKRPLKVRVVHVSL FEVGLLFFTVPVMAYILNIGIVEALIMDLGVTVFITIYAFTYNFIYDHTRAFIIRSRAVAC
Sequences:
>Translated_141_residues MSIIERVFHSVLFEVLAVTFSIIGLSIFTDFDVKSLSGMMIVVATIAMIWNFIFNWGFDRVITGDKEKRPLKVRVVHVSL FEVGLLFFTVPVMAYILNIGIVEALIMDLGVTVFITIYAFTYNFIYDHTRAFIIRSRAVAC >Mature_140_residues SIIERVFHSVLFEVLAVTFSIIGLSIFTDFDVKSLSGMMIVVATIAMIWNFIFNWGFDRVITGDKEKRPLKVRVVHVSLF EVGLLFFTVPVMAYILNIGIVEALIMDLGVTVFITIYAFTYNFIYDHTRAFIIRSRAVAC
Specific function: Unknown
COG id: COG4125
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16069; Mature: 15938
Theoretical pI: Translated: 7.60; Mature: 7.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIIERVFHSVLFEVLAVTFSIIGLSIFTDFDVKSLSGMMIVVATIAMIWNFIFNWGFDR CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC VITGDKEKRPLKVRVVHVSLFEVGLLFFTVPVMAYILNIGIVEALIMDLGVTVFITIYAF EECCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TYNFIYDHTRAFIIRSRAVAC HHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SIIERVFHSVLFEVLAVTFSIIGLSIFTDFDVKSLSGMMIVVATIAMIWNFIFNWGFDR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC VITGDKEKRPLKVRVVHVSLFEVGLLFFTVPVMAYILNIGIVEALIMDLGVTVFITIYAF EECCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TYNFIYDHTRAFIIRSRAVAC HHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA